Wall clock time and date at job start Mon Mar 30 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99817 * 2 1 4 4 H 1.48503 * 109.47005 * 270.00112 * 3 2 1 5 5 H 1.48499 * 109.47299 * 29.99923 * 3 2 1 6 6 H 1.48497 * 109.47145 * 150.00077 * 3 2 1 7 7 C 1.37875 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99740 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.72774 * 60.56351 * 9 7 2 11 11 N 1.47276 * 109.69398 * 299.99558 * 9 7 2 12 12 C 1.46947 * 111.44790 * 188.83980 * 11 9 7 13 13 C 1.53523 * 109.60414 * 71.44151 * 12 11 9 14 14 C 1.50818 * 107.89241 * 310.96988 * 13 12 11 15 15 C 1.39452 * 129.22365 * 195.67463 * 14 13 12 16 16 C 1.35529 * 107.35507 * 179.97438 * 15 14 13 17 17 N 1.36090 * 108.34997 * 359.90012 * 16 15 14 18 18 H 0.96996 * 125.74220 * 180.21503 * 17 16 15 19 19 C 1.35668 * 123.26765 * 15.70077 * 14 13 12 20 20 C 1.50851 * 124.04500 * 179.78180 * 16 15 14 21 21 C 1.53345 * 108.45112 * 343.38506 * 20 16 15 22 22 C 1.53128 * 109.45404 * 50.02855 * 21 20 16 23 23 C 1.50782 * 128.48357 * 359.97438 * 15 14 13 24 24 H 0.96999 * 120.00082 * 359.97438 * 1 2 3 25 25 H 1.00900 * 111.00033 * 313.12266 * 11 9 7 26 26 H 1.08994 * 109.45421 * 191.48348 * 12 11 9 27 27 H 1.09006 * 109.45314 * 311.43508 * 12 11 9 28 28 H 1.08998 * 109.77207 * 70.56340 * 13 12 11 29 29 H 1.08995 * 109.78265 * 191.31225 * 13 12 11 30 30 H 1.08993 * 109.64080 * 103.07354 * 20 16 15 31 31 H 1.08998 * 109.63414 * 223.48850 * 20 16 15 32 32 H 1.09000 * 109.46740 * 170.02078 * 21 20 16 33 33 H 1.08996 * 109.47215 * 290.03418 * 21 20 16 34 34 H 1.09001 * 109.47319 * 49.80799 * 22 21 20 35 35 H 1.08996 * 109.47044 * 169.81687 * 22 21 20 36 36 H 1.09003 * 109.63712 * 283.21858 * 23 15 14 37 37 H 1.09000 * 109.63943 * 43.83058 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6307 -2.5658 -0.8933 11 7 0.4021 -2.5821 1.2011 12 6 -0.1889 -3.9192 1.3500 13 6 0.9006 -4.9215 1.7566 14 6 2.0701 -4.7391 0.8220 15 6 3.1550 -5.5846 0.5916 16 6 3.9427 -4.9878 -0.3359 17 7 3.3724 -3.8020 -0.6833 18 1 3.7250 -3.1720 -1.3311 19 6 2.2265 -3.6492 0.0295 20 6 5.2276 -5.5797 -0.8595 21 6 5.6770 -6.6890 0.0991 22 6 4.5053 -7.6380 0.3661 23 6 3.4531 -6.9215 1.2218 24 1 -0.4850 0.8400 0.0004 25 1 0.9183 -2.3208 2.0278 26 1 -0.9613 -3.8912 2.1184 27 1 -0.6305 -4.2284 0.4025 28 1 1.2146 -4.7288 2.7824 29 1 0.5162 -5.9381 1.6736 30 1 5.0605 -5.9985 -1.8518 31 1 5.9927 -4.8051 -0.9128 32 1 6.5002 -7.2452 -0.3493 33 1 6.0070 -6.2457 1.0386 34 1 4.0593 -7.9403 -0.5815 35 1 4.8653 -8.5197 0.8961 36 1 3.8397 -6.7732 2.2300 37 1 2.5427 -7.5198 1.2597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259810064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:33 Heat of formation + Delta-G solvation = 23.540704 kcal Electronic energy + Delta-G solvation = -18210.035805 eV Core-core repulsion = 15565.376738 eV Total energy + Delta-G solvation = -2644.659067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.96800 -36.80450 -35.31531 -32.97859 -31.43652 -29.82557 -27.96863 -27.84734 -25.45791 -23.34127 -21.69081 -21.57530 -20.65769 -18.02297 -17.93675 -16.65075 -16.28489 -14.76520 -14.52114 -14.11838 -13.68710 -13.58429 -13.46926 -13.26393 -12.78322 -12.61353 -12.29743 -11.90853 -11.70559 -11.51202 -11.23689 -11.09489 -10.85649 -10.69132 -10.63610 -10.42516 -10.21396 -10.00897 -9.84427 -9.15063 -8.53434 -7.71403 -6.97521 -6.77833 -5.96474 -4.14358 3.03575 3.27196 3.35432 3.37578 3.66318 4.06800 4.40640 5.01419 5.04948 5.11502 5.23268 5.56820 5.60461 5.72295 5.77891 5.80393 5.88282 5.95046 6.01805 6.06356 6.13511 6.17689 6.25377 6.31844 6.35673 6.49820 6.54627 6.68867 6.84993 7.08355 7.16041 7.42715 7.71389 7.80911 7.99996 8.16346 8.48060 8.56465 8.93255 8.99552 9.55279 11.05989 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028553 B = 0.007196 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.381557 B = 3889.920398 C = 4672.082407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.085 3.915 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.282 3.718 10 H 0.051 0.949 11 N -0.641 5.641 12 C 0.054 3.946 13 C -0.074 4.074 14 C -0.200 4.200 15 C -0.152 4.152 16 C -0.029 4.029 17 N -0.531 5.531 18 H 0.410 0.590 19 C 0.042 3.958 20 C -0.040 4.040 21 C -0.109 4.109 22 C -0.116 4.116 23 C -0.041 4.041 24 H 0.259 0.741 25 H 0.329 0.671 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.977 -11.433 0.412 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.123 4.123 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.071 0.929 9 C 0.173 3.827 10 H 0.068 0.932 11 N -0.268 5.268 12 C -0.077 4.077 13 C -0.114 4.114 14 C -0.206 4.206 15 C -0.159 4.159 16 C -0.142 4.142 17 N -0.123 5.123 18 H 0.247 0.753 19 C -0.076 4.076 20 C -0.078 4.078 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.078 4.078 24 H 0.069 0.931 25 H 0.146 0.854 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.270 -10.939 -0.012 12.609 hybrid contribution 1.469 0.714 0.014 1.633 sum 7.739 -10.226 0.003 12.824 Atomic orbital electron populations 1.70100 1.05623 1.26065 1.45852 1.24965 0.94682 0.98666 0.93999 0.86737 0.80030 0.83966 0.78009 1.20737 1.21060 1.20063 1.20868 0.92220 0.89820 1.55335 0.92870 1.17974 0.86103 0.87623 0.90996 0.93165 1.61122 1.38490 1.21259 1.05948 1.22093 0.95630 0.89760 1.00176 1.20723 0.94300 0.99584 0.96778 1.18904 0.99459 0.96678 1.05534 1.18733 0.97151 0.97610 1.02446 1.20008 0.99117 0.89962 1.05072 1.41389 1.19672 1.16788 1.34414 0.75349 1.22459 0.89903 0.99746 0.95488 1.20003 0.92465 0.97072 0.98280 1.21469 0.97475 0.96244 0.99484 1.21566 0.96109 0.97448 1.00189 1.19912 0.97719 0.92673 0.97517 0.93118 0.85369 0.92410 0.92307 0.92838 0.92826 0.91739 0.91883 0.92032 0.91793 0.92097 0.92370 0.92256 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.80 12.78 55.43 0.71 -23.09 16 2 C 0.08 2.29 5.39 -17.82 -0.10 2.19 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.68 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.46 8.56 -34.44 -0.29 -14.75 16 8 H 0.05 1.41 7.69 -52.49 -0.40 1.00 16 9 C 0.28 7.05 2.71 -69.75 -0.19 6.86 16 10 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 11 N -0.64 -15.32 5.91 -108.51 -0.64 -15.96 16 12 C 0.05 1.09 6.55 -3.53 -0.02 1.07 16 13 C -0.07 -1.39 6.40 -27.55 -0.18 -1.56 16 14 C -0.20 -4.17 6.02 -105.03 -0.63 -4.80 16 15 C -0.15 -2.84 5.94 -105.10 -0.62 -3.46 16 16 C -0.03 -0.53 7.05 -81.60 -0.57 -1.10 16 17 N -0.53 -10.53 5.93 -5.19 -0.03 -10.56 16 18 H 0.41 7.49 8.96 -40.82 -0.37 7.13 16 19 C 0.04 0.94 6.41 -81.68 -0.52 0.42 16 20 C -0.04 -0.55 6.29 -27.63 -0.17 -0.72 16 21 C -0.11 -1.30 5.90 -26.49 -0.16 -1.46 16 22 C -0.12 -1.41 5.91 -26.47 -0.16 -1.57 16 23 C -0.04 -0.60 6.27 -27.65 -0.17 -0.77 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.33 7.97 8.57 -39.29 -0.34 7.63 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.06 0.76 8.11 -51.93 -0.42 0.33 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 294.11 15.07 4.43 4.43 Total: -1.00 -28.94 294.11 -10.08 -39.01 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.73 Total: 10.14 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -3.79 Total: -19.67 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.04 Total: -49.61 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.94 -10.08 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.554 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds