Wall clock time and date at job start Mon Mar 30 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99817 * 2 1 4 4 H 1.48503 * 109.47005 * 270.00112 * 3 2 1 5 5 H 1.48499 * 109.47299 * 29.99923 * 3 2 1 6 6 H 1.48497 * 109.47145 * 150.00077 * 3 2 1 7 7 C 1.37875 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99740 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.72774 * 60.56351 * 9 7 2 11 11 N 1.47276 * 109.69398 * 299.99558 * 9 7 2 12 12 C 1.46947 * 111.44790 * 188.83980 * 11 9 7 13 13 C 1.53523 * 109.60414 * 71.44151 * 12 11 9 14 14 C 1.50818 * 107.89241 * 310.96988 * 13 12 11 15 15 C 1.39452 * 129.22365 * 195.67463 * 14 13 12 16 16 C 1.35529 * 107.35507 * 179.97438 * 15 14 13 17 17 N 1.36090 * 108.34997 * 359.90012 * 16 15 14 18 18 H 0.96996 * 125.74220 * 180.21503 * 17 16 15 19 19 C 1.35668 * 123.26765 * 15.70077 * 14 13 12 20 20 C 1.50851 * 124.04500 * 179.78180 * 16 15 14 21 21 C 1.53345 * 108.45112 * 343.38506 * 20 16 15 22 22 C 1.53128 * 109.45404 * 50.02855 * 21 20 16 23 23 C 1.50782 * 128.48357 * 359.97438 * 15 14 13 24 24 H 0.96999 * 120.00082 * 359.97438 * 1 2 3 25 25 H 1.00900 * 111.00033 * 313.12266 * 11 9 7 26 26 H 1.08994 * 109.45421 * 191.48348 * 12 11 9 27 27 H 1.09006 * 109.45314 * 311.43508 * 12 11 9 28 28 H 1.08998 * 109.77207 * 70.56340 * 13 12 11 29 29 H 1.08995 * 109.78265 * 191.31225 * 13 12 11 30 30 H 1.08993 * 109.64080 * 103.07354 * 20 16 15 31 31 H 1.08998 * 109.63414 * 223.48850 * 20 16 15 32 32 H 1.09000 * 109.46740 * 170.02078 * 21 20 16 33 33 H 1.08996 * 109.47215 * 290.03418 * 21 20 16 34 34 H 1.09001 * 109.47319 * 49.80799 * 22 21 20 35 35 H 1.08996 * 109.47044 * 169.81687 * 22 21 20 36 36 H 1.09003 * 109.63712 * 283.21858 * 23 15 14 37 37 H 1.09000 * 109.63943 * 43.83058 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6307 -2.5658 -0.8933 11 7 0.4021 -2.5821 1.2011 12 6 -0.1889 -3.9192 1.3500 13 6 0.9006 -4.9215 1.7566 14 6 2.0701 -4.7391 0.8220 15 6 3.1550 -5.5846 0.5916 16 6 3.9427 -4.9878 -0.3359 17 7 3.3724 -3.8020 -0.6833 18 1 3.7250 -3.1720 -1.3311 19 6 2.2265 -3.6492 0.0295 20 6 5.2276 -5.5797 -0.8595 21 6 5.6770 -6.6890 0.0991 22 6 4.5053 -7.6380 0.3661 23 6 3.4531 -6.9215 1.2218 24 1 -0.4850 0.8400 0.0004 25 1 0.9183 -2.3208 2.0278 26 1 -0.9613 -3.8912 2.1184 27 1 -0.6305 -4.2284 0.4025 28 1 1.2146 -4.7288 2.7824 29 1 0.5162 -5.9381 1.6736 30 1 5.0605 -5.9985 -1.8518 31 1 5.9927 -4.8051 -0.9128 32 1 6.5002 -7.2452 -0.3493 33 1 6.0070 -6.2457 1.0386 34 1 4.0593 -7.9403 -0.5815 35 1 4.8653 -8.5197 0.8961 36 1 3.8397 -6.7732 2.2300 37 1 2.5427 -7.5198 1.2597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810064.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:33 Heat of formation + Delta-G solvation = 5.760760 kcal Electronic energy + Delta-G solvation = -18210.806801 eV Core-core repulsion = 15565.376738 eV Total energy + Delta-G solvation = -2645.430063 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.45902 -38.27915 -36.68977 -34.88629 -32.97746 -31.34060 -29.45642 -29.29812 -27.26806 -24.84943 -23.34076 -22.85526 -22.09749 -19.62699 -19.30518 -18.47734 -17.90566 -16.49403 -15.96938 -15.69457 -15.31295 -15.03462 -14.69406 -14.60017 -14.20234 -14.00491 -13.94620 -13.37141 -13.26131 -13.07787 -12.80306 -12.68218 -12.43017 -12.42146 -11.92384 -11.81369 -11.61800 -11.46098 -11.19915 -11.07876 -10.61116 -9.20477 -8.77015 -8.38463 -7.99826 -6.27449 1.39969 1.42521 1.50769 1.54636 2.11350 2.43552 2.60534 3.18507 3.90423 4.00543 4.07980 4.09904 4.27130 4.37761 4.40727 4.51160 4.58399 4.68839 4.76531 4.79768 4.92703 4.95209 5.01382 5.09069 5.18129 5.19154 5.21821 5.33054 5.36306 5.53460 5.63379 5.68167 5.72923 6.00507 6.34365 6.48074 6.68451 6.96604 6.99424 7.05676 7.45843 8.99340 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028553 B = 0.007196 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.381557 B = 3889.920398 C = 4672.082407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.038 3.962 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.049 0.951 9 C 0.290 3.710 10 H 0.006 0.994 11 N -0.657 5.657 12 C 0.057 3.943 13 C -0.066 4.066 14 C -0.207 4.207 15 C -0.172 4.172 16 C -0.020 4.020 17 N -0.535 5.535 18 H 0.413 0.587 19 C -0.003 4.003 20 C -0.042 4.042 21 C -0.106 4.106 22 C -0.112 4.112 23 C -0.040 4.040 24 H 0.259 0.741 25 H 0.324 0.676 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.960 -13.045 0.832 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.167 4.167 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.067 0.933 9 C 0.180 3.820 10 H 0.024 0.976 11 N -0.284 5.284 12 C -0.073 4.073 13 C -0.105 4.105 14 C -0.213 4.213 15 C -0.179 4.179 16 C -0.133 4.133 17 N -0.128 5.128 18 H 0.249 0.751 19 C -0.121 4.121 20 C -0.080 4.080 21 C -0.144 4.144 22 C -0.149 4.149 23 C -0.078 4.078 24 H 0.068 0.932 25 H 0.141 0.859 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.259 -12.562 0.403 15.039 hybrid contribution 0.859 1.146 -0.145 1.439 sum 9.118 -11.416 0.258 14.613 Atomic orbital electron populations 1.70229 1.07053 1.26780 1.47070 1.25689 0.95430 1.01862 0.93669 0.85682 0.78593 0.79816 0.78113 1.20068 1.20855 1.19863 1.21113 0.92135 0.90989 1.54893 0.93292 1.17511 0.86220 0.88474 0.89757 0.97624 1.60952 1.38456 1.23826 1.05194 1.22109 0.96410 0.88613 1.00209 1.20655 0.93115 1.00117 0.96637 1.19337 1.00487 0.96470 1.04995 1.19229 0.96490 0.99207 1.02980 1.20849 1.00043 0.88588 1.03822 1.41460 1.19295 1.17699 1.34331 0.75102 1.22046 0.91385 1.00111 0.98510 1.20223 0.90395 0.97944 0.99411 1.21499 0.98248 0.95671 0.98934 1.21565 0.95326 0.98099 0.99922 1.20003 0.98978 0.90838 0.97950 0.93190 0.85928 0.90420 0.93603 0.92048 0.90582 0.90239 0.90846 0.88919 0.92328 0.92212 0.89658 0.91840 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.98 12.78 21.45 0.27 -50.71 16 2 C 0.04 2.10 5.39 84.65 0.46 2.56 16 3 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.55 -30.37 8.56 25.60 0.22 -30.15 16 8 H 0.05 2.66 7.69 -2.91 -0.02 2.64 16 9 C 0.29 15.18 2.71 43.39 0.12 15.29 16 10 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 11 N -0.66 -32.51 5.91 -497.22 -2.94 -35.45 16 12 C 0.06 2.32 6.55 86.47 0.57 2.88 16 13 C -0.07 -2.42 6.40 30.06 0.19 -2.22 16 14 C -0.21 -8.56 6.02 -20.13 -0.12 -8.68 16 15 C -0.17 -6.18 5.94 -20.17 -0.12 -6.30 16 16 C -0.02 -0.70 7.05 41.32 0.29 -0.41 16 17 N -0.54 -21.43 5.93 -170.34 -1.01 -22.44 16 18 H 0.41 15.39 8.96 -92.71 -0.83 14.56 16 19 C 0.00 -0.15 6.41 41.39 0.27 0.11 16 20 C -0.04 -1.02 6.29 30.01 0.19 -0.83 16 21 C -0.11 -2.10 5.90 30.75 0.18 -1.92 16 22 C -0.11 -2.29 5.91 30.76 0.18 -2.11 16 23 C -0.04 -1.08 6.27 30.00 0.19 -0.89 16 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.32 16.20 8.57 -89.69 -0.77 15.43 16 26 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.05 1.96 8.07 -2.38 -0.02 1.94 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 34 H 0.06 1.26 8.11 -2.39 -0.02 1.24 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -63.77 294.11 0.43 -63.34 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.52 Total: 32.65 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 2.61 Total: -32.68 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -3.68 Total: -108.60 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -63.77 0.43 -63.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810064.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.099 kcal (2) G-P(sol) polarization free energy of solvation -63.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds