Wall clock time and date at job start Mon Mar 30 2020 04:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99799 * 2 1 4 4 C 1.39676 * 110.99801 * 123.95316 * 2 1 3 5 5 C 1.38759 * 119.90462 * 300.02060 * 4 2 1 6 6 C 1.38084 * 119.74066 * 179.97438 * 5 4 2 7 7 C 1.37698 * 119.92244 * 359.91346 * 6 5 4 8 8 C 1.38756 * 120.63056 * 0.22522 * 7 6 5 9 9 C 1.37603 * 119.80662 * 359.72038 * 8 7 6 10 10 C 1.50707 * 121.80207 * 180.32494 * 9 8 7 11 11 C 1.52899 * 109.86830 * 343.03612 * 10 9 8 12 12 N 1.47168 * 108.48533 * 50.43003 * 11 10 9 13 13 C 1.46630 * 110.24945 * 288.73237 * 12 11 10 14 14 H 1.08998 * 109.26783 * 292.21272 * 13 12 11 15 15 C 1.50704 * 109.26571 * 172.70969 * 13 12 11 16 16 H 1.08007 * 119.99841 * 240.00336 * 15 13 12 17 17 C 1.37879 * 120.00081 * 59.99503 * 15 13 12 18 18 N 1.31509 * 120.00090 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99907 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47178 * 90.00194 * 19 17 15 21 21 H 1.48502 * 109.47320 * 210.00546 * 19 17 15 22 22 H 1.48505 * 109.47282 * 330.00435 * 19 17 15 23 23 H 1.08996 * 109.47166 * 296.04599 * 1 2 3 24 24 H 1.09000 * 109.47092 * 56.04776 * 1 2 3 25 25 H 1.09005 * 109.47107 * 176.04691 * 1 2 3 26 26 H 1.08999 * 109.47412 * 183.95051 * 3 2 1 27 27 H 1.09000 * 109.47093 * 303.95591 * 3 2 1 28 28 H 1.09003 * 109.47078 * 63.95702 * 3 2 1 29 29 H 1.07995 * 120.12735 * 359.96421 * 5 4 2 30 30 H 1.07997 * 120.02319 * 180.09094 * 6 5 4 31 31 H 1.07995 * 119.63772 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.39294 * 222.93620 * 10 9 8 33 33 H 1.09000 * 109.38745 * 103.13092 * 10 9 8 34 34 H 1.09000 * 109.63305 * 170.12793 * 11 10 9 35 35 H 1.08996 * 109.63767 * 290.72639 * 11 10 9 36 36 H 1.00896 * 110.99995 * 52.15496 * 12 11 10 37 37 H 0.96998 * 120.00547 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9695 -0.7283 1.0817 5 6 1.6556 -0.3456 2.3780 6 6 2.1518 -1.0683 3.4448 7 6 2.9532 -2.1649 3.2182 8 6 3.2733 -2.5514 1.9245 9 6 2.7819 -1.8371 0.8559 10 6 3.0950 -2.2211 -0.5674 11 6 4.2977 -3.1647 -0.5985 12 7 4.0602 -4.2551 0.3609 13 6 4.1615 -3.7532 1.7349 14 1 5.1946 -3.4729 1.9402 15 6 3.7406 -4.8378 2.6928 16 1 2.9042 -4.6770 3.3570 17 6 4.4232 -6.0354 2.7213 18 7 5.4419 -6.2311 1.9128 19 14 3.9020 -7.3795 3.9091 20 1 2.8949 -8.2540 3.2562 21 1 5.0869 -8.1889 4.2916 22 1 3.3098 -6.7642 5.1241 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0827 1.3433 -0.0708 27 1 1.5897 1.9163 -0.8524 28 1 1.7044 1.8723 0.9233 29 1 1.0258 0.5143 2.5518 30 1 1.9092 -0.7754 4.4555 31 1 3.3384 -2.7271 4.0559 32 1 3.3240 -1.3238 -1.1423 33 1 2.2313 -2.7212 -1.0056 34 1 4.4136 -3.5774 -1.6007 35 1 5.1986 -2.6193 -0.3175 36 1 3.1640 -4.6897 0.1998 37 1 5.9224 -7.0734 1.9330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259810082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:23 Heat of formation + Delta-G solvation = 38.595126 kcal Electronic energy + Delta-G solvation = -18230.531305 eV Core-core repulsion = 15586.525047 eV Total energy + Delta-G solvation = -2644.006258 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.87735 -37.16256 -35.13345 -32.88836 -30.71101 -29.87762 -27.99550 -27.51910 -25.31353 -24.24423 -22.49545 -22.09278 -20.02416 -19.04564 -16.61272 -16.24500 -15.34500 -15.02968 -14.86360 -14.51537 -14.02348 -13.65475 -13.51587 -12.89763 -12.65101 -12.55279 -12.27366 -11.97813 -11.80001 -11.66322 -11.53943 -11.04048 -10.89260 -10.85739 -10.72361 -10.51869 -10.09849 -9.82167 -9.09103 -8.48063 -8.31900 -7.94026 -7.76425 -6.87713 -5.90516 -4.05591 1.91427 2.03847 3.33102 3.40333 3.42618 4.07727 4.33685 4.49070 5.20177 5.27806 5.34239 5.35833 5.42021 5.51104 5.54634 5.77284 5.82399 5.87578 5.89062 5.91761 6.04586 6.11308 6.25967 6.32311 6.42766 6.66087 6.74958 6.85528 7.00664 7.02104 7.10107 7.33877 7.41419 7.48553 7.83742 7.89461 8.18921 8.57911 8.93281 9.08590 9.62856 11.13460 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.007053 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.320434 B = 3968.743808 C = 4482.695102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.504 5.504 3 C 0.031 3.969 4 C 0.070 3.930 5 C -0.170 4.170 6 C -0.127 4.127 7 C -0.102 4.102 8 C -0.069 4.069 9 C -0.068 4.068 10 C -0.099 4.099 11 C 0.048 3.952 12 N -0.643 5.643 13 C 0.250 3.750 14 H 0.054 0.946 15 C -0.536 4.536 16 H 0.059 0.941 17 C 0.082 3.918 18 N -0.846 5.846 19 Si 0.884 3.116 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.026 0.974 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.326 0.674 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 11.448 -2.763 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.224 5.224 3 C -0.116 4.116 4 C -0.023 4.023 5 C -0.190 4.190 6 C -0.146 4.146 7 C -0.121 4.121 8 C -0.071 4.071 9 C -0.069 4.069 10 C -0.138 4.138 11 C -0.083 4.083 12 N -0.270 5.270 13 C 0.142 3.858 14 H 0.071 0.929 15 C -0.575 4.575 16 H 0.077 0.923 17 C -0.125 4.125 18 N -0.480 5.480 19 Si 0.712 3.288 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 H 0.045 0.955 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.147 0.853 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.691 10.844 -3.319 12.688 hybrid contribution -1.573 0.315 1.525 2.213 sum -7.263 11.159 -1.794 13.435 Atomic orbital electron populations 1.22393 0.86755 1.02400 1.00078 1.59541 1.07729 1.13322 1.41859 1.22396 1.01012 0.88149 1.00092 1.18622 0.99526 0.96014 0.88145 1.21230 1.03265 1.01097 0.93457 1.20814 0.99378 0.96564 0.97801 1.21236 0.97399 0.95561 0.97877 1.21301 0.96523 0.97499 0.91800 1.19518 0.97481 0.94101 0.95828 1.21004 0.99787 1.00378 0.92610 1.22134 0.96053 0.92599 0.97503 1.61308 1.36913 1.25880 1.02872 1.18213 0.93287 0.87337 0.86987 0.92875 1.21004 1.16749 0.99388 1.20363 0.92289 1.24980 0.94570 0.98056 0.94868 1.70107 1.18637 1.23991 1.35255 0.86745 0.78117 0.82341 0.81593 1.20705 1.21285 1.20008 0.95543 0.91520 0.91321 0.91331 0.91515 0.95576 0.87750 0.87184 0.85327 0.91255 0.91806 0.92167 0.92200 0.85668 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.34 60.07 0.56 0.95 16 2 N -0.50 -7.45 4.03 -186.78 -0.75 -8.20 16 3 C 0.03 0.38 9.38 60.06 0.56 0.94 16 4 C 0.07 1.22 4.71 -83.70 -0.39 0.83 16 5 C -0.17 -2.84 8.56 -39.45 -0.34 -3.18 16 6 C -0.13 -2.21 10.02 -39.84 -0.40 -2.61 16 7 C -0.10 -2.07 8.70 -39.59 -0.34 -2.42 16 8 C -0.07 -1.49 5.46 -104.69 -0.57 -2.06 16 9 C -0.07 -1.34 5.78 -104.46 -0.60 -1.94 16 10 C -0.10 -1.78 5.38 -27.93 -0.15 -1.93 16 11 C 0.05 0.94 6.62 -3.73 -0.02 0.92 16 12 N -0.64 -15.17 5.94 -109.27 -0.65 -15.82 16 13 C 0.25 6.17 2.38 -70.19 -0.17 6.00 16 14 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 15 C -0.54 -14.24 7.81 -34.44 -0.27 -14.51 16 16 H 0.06 1.56 6.75 -52.48 -0.35 1.20 16 17 C 0.08 2.23 5.38 -17.82 -0.10 2.14 16 18 N -0.85 -24.02 12.76 55.43 0.71 -23.31 16 19 Si 0.88 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.03 0.32 7.11 -51.93 -0.37 -0.05 16 24 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.03 0.31 7.33 -51.93 -0.38 -0.07 16 29 H 0.10 1.52 7.00 -52.49 -0.37 1.15 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.13 2.65 7.10 -52.49 -0.37 2.28 16 32 H 0.07 1.17 7.79 -51.93 -0.40 0.77 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 36 H 0.33 7.74 8.55 -39.29 -0.34 7.41 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 296.11 15.07 4.46 4.46 Total: -1.00 -28.26 296.11 -9.00 -37.26 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.52 Total: 6.68 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.23 Total: -16.88 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.69 Total: -47.33 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.26 -9.00 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.855 kcal (2) G-P(sol) polarization free energy of solvation -28.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds