Wall clock time and date at job start Mon Mar 30 2020 04:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99799 * 2 1 4 4 C 1.39676 * 110.99801 * 123.95316 * 2 1 3 5 5 C 1.38759 * 119.90462 * 300.02060 * 4 2 1 6 6 C 1.38084 * 119.74066 * 179.97438 * 5 4 2 7 7 C 1.37698 * 119.92244 * 359.91346 * 6 5 4 8 8 C 1.38756 * 120.63056 * 0.22522 * 7 6 5 9 9 C 1.37603 * 119.80662 * 359.72038 * 8 7 6 10 10 C 1.50707 * 121.80207 * 180.32494 * 9 8 7 11 11 C 1.52899 * 109.86830 * 343.03612 * 10 9 8 12 12 N 1.47168 * 108.48533 * 50.43003 * 11 10 9 13 13 C 1.46630 * 110.24945 * 288.73237 * 12 11 10 14 14 H 1.08998 * 109.26783 * 292.21272 * 13 12 11 15 15 C 1.50704 * 109.26571 * 172.70969 * 13 12 11 16 16 H 1.08007 * 119.99841 * 240.00336 * 15 13 12 17 17 C 1.37879 * 120.00081 * 59.99503 * 15 13 12 18 18 N 1.31509 * 120.00090 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99907 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47178 * 90.00194 * 19 17 15 21 21 H 1.48502 * 109.47320 * 210.00546 * 19 17 15 22 22 H 1.48505 * 109.47282 * 330.00435 * 19 17 15 23 23 H 1.08996 * 109.47166 * 296.04599 * 1 2 3 24 24 H 1.09000 * 109.47092 * 56.04776 * 1 2 3 25 25 H 1.09005 * 109.47107 * 176.04691 * 1 2 3 26 26 H 1.08999 * 109.47412 * 183.95051 * 3 2 1 27 27 H 1.09000 * 109.47093 * 303.95591 * 3 2 1 28 28 H 1.09003 * 109.47078 * 63.95702 * 3 2 1 29 29 H 1.07995 * 120.12735 * 359.96421 * 5 4 2 30 30 H 1.07997 * 120.02319 * 180.09094 * 6 5 4 31 31 H 1.07995 * 119.63772 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.39294 * 222.93620 * 10 9 8 33 33 H 1.09000 * 109.38745 * 103.13092 * 10 9 8 34 34 H 1.09000 * 109.63305 * 170.12793 * 11 10 9 35 35 H 1.08996 * 109.63767 * 290.72639 * 11 10 9 36 36 H 1.00896 * 110.99995 * 52.15496 * 12 11 10 37 37 H 0.96998 * 120.00547 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9695 -0.7283 1.0817 5 6 1.6556 -0.3456 2.3780 6 6 2.1518 -1.0683 3.4448 7 6 2.9532 -2.1649 3.2182 8 6 3.2733 -2.5514 1.9245 9 6 2.7819 -1.8371 0.8559 10 6 3.0950 -2.2211 -0.5674 11 6 4.2977 -3.1647 -0.5985 12 7 4.0602 -4.2551 0.3609 13 6 4.1615 -3.7532 1.7349 14 1 5.1946 -3.4729 1.9402 15 6 3.7406 -4.8378 2.6928 16 1 2.9042 -4.6770 3.3570 17 6 4.4232 -6.0354 2.7213 18 7 5.4419 -6.2311 1.9128 19 14 3.9020 -7.3795 3.9091 20 1 2.8949 -8.2540 3.2562 21 1 5.0869 -8.1889 4.2916 22 1 3.3098 -6.7642 5.1241 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0827 1.3433 -0.0708 27 1 1.5897 1.9163 -0.8524 28 1 1.7044 1.8723 0.9233 29 1 1.0258 0.5143 2.5518 30 1 1.9092 -0.7754 4.4555 31 1 3.3384 -2.7271 4.0559 32 1 3.3240 -1.3238 -1.1423 33 1 2.2313 -2.7212 -1.0056 34 1 4.4136 -3.5774 -1.6007 35 1 5.1986 -2.6193 -0.3175 36 1 3.1640 -4.6897 0.1998 37 1 5.9224 -7.0734 1.9330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:23 Heat of formation + Delta-G solvation = 21.034683 kcal Electronic energy + Delta-G solvation = -18231.292783 eV Core-core repulsion = 15586.525047 eV Total energy + Delta-G solvation = -2644.767736 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.30463 -38.58273 -36.59472 -34.80590 -32.41459 -31.43460 -29.48587 -28.46487 -27.23869 -25.46589 -24.10725 -23.76378 -21.45369 -20.62203 -18.52237 -17.66631 -16.77058 -16.52562 -16.33135 -15.98431 -15.54951 -15.21789 -14.91509 -14.44269 -14.19939 -14.11055 -13.57173 -13.29779 -13.13922 -13.05106 -12.82322 -12.61860 -12.57999 -12.52851 -12.30459 -12.09602 -11.85521 -11.63598 -10.99769 -10.55300 -9.43987 -9.34862 -9.33768 -8.66157 -7.97644 -6.18891 0.47353 0.56848 1.44652 1.45880 1.55006 2.46991 2.88641 2.96869 3.24490 3.92144 4.00266 4.12305 4.25909 4.32013 4.35872 4.42102 4.45555 4.55497 4.64204 4.69125 4.81227 4.85217 4.92786 4.98035 4.98807 5.10504 5.17418 5.39900 5.41489 5.57747 5.67030 5.74746 5.81366 6.00224 6.01080 6.21486 6.53466 6.65924 7.07258 7.09129 7.52865 9.05918 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031871 B = 0.007053 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.320434 B = 3968.743808 C = 4482.695102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.516 5.516 3 C 0.030 3.970 4 C 0.079 3.921 5 C -0.162 4.162 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.096 4.096 9 C -0.085 4.085 10 C -0.083 4.083 11 C 0.051 3.949 12 N -0.661 5.661 13 C 0.257 3.743 14 H 0.008 0.992 15 C -0.544 4.544 16 H 0.055 0.945 17 C 0.035 3.965 18 N -0.880 5.880 19 Si 0.949 3.051 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.270 1.270 23 H 0.035 0.965 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.034 0.966 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.322 0.678 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.778 13.296 -2.955 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.238 5.238 3 C -0.116 4.116 4 C -0.015 4.015 5 C -0.182 4.182 6 C -0.138 4.138 7 C -0.142 4.142 8 C -0.099 4.099 9 C -0.087 4.087 10 C -0.122 4.122 11 C -0.079 4.079 12 N -0.288 5.288 13 C 0.148 3.852 14 H 0.026 0.974 15 C -0.583 4.583 16 H 0.073 0.927 17 C -0.169 4.169 18 N -0.516 5.516 19 Si 0.775 3.225 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.194 1.194 23 H 0.053 0.947 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.804 12.712 -3.511 15.324 hybrid contribution -0.949 -0.134 1.551 1.823 sum -8.753 12.578 -1.959 15.449 Atomic orbital electron populations 1.22456 0.85122 1.02282 1.01730 1.59537 1.09135 1.14527 1.40556 1.22464 1.00541 0.86897 1.01712 1.18741 0.98116 0.95102 0.89511 1.21573 1.02516 1.01358 0.92765 1.21078 0.97846 0.95129 0.99750 1.21194 0.99048 0.97137 0.96840 1.21023 0.97946 0.97503 0.93407 1.19685 0.98274 0.94989 0.95711 1.20838 0.98736 1.00360 0.92264 1.22140 0.96489 0.92081 0.97220 1.61122 1.36708 1.27833 1.03160 1.17817 0.91589 0.88373 0.87375 0.97446 1.21280 1.16310 1.00067 1.20616 0.92710 1.25699 0.94592 1.00196 0.96413 1.70240 1.19852 1.24472 1.37039 0.85728 0.77664 0.79520 0.79623 1.20345 1.21073 1.19434 0.94678 0.88902 0.92554 0.92322 0.88909 0.94758 0.84638 0.84225 0.86970 0.89637 0.91384 0.90412 0.93446 0.86085 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.34 127.69 1.19 1.84 16 2 N -0.52 -13.50 4.03 -744.84 -3.00 -16.50 16 3 C 0.03 0.63 9.38 127.69 1.20 1.83 16 4 C 0.08 2.57 4.71 38.27 0.18 2.75 16 5 C -0.16 -4.90 8.56 22.36 0.19 -4.70 16 6 C -0.12 -3.93 10.02 22.11 0.22 -3.71 16 7 C -0.12 -5.07 8.70 22.27 0.19 -4.88 16 8 C -0.10 -4.28 5.46 -19.91 -0.11 -4.39 16 9 C -0.09 -3.31 5.78 -19.76 -0.11 -3.42 16 10 C -0.08 -2.94 5.38 29.82 0.16 -2.78 16 11 C 0.05 2.03 6.62 86.22 0.57 2.60 16 12 N -0.66 -32.38 5.94 -499.62 -2.97 -35.35 16 13 C 0.26 13.33 2.38 43.46 0.10 13.43 16 14 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 15 C -0.54 -30.02 7.81 25.60 0.20 -29.82 16 16 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 17 C 0.03 1.94 5.38 84.66 0.46 2.39 16 18 N -0.88 -51.78 12.76 21.45 0.27 -51.50 16 19 Si 0.95 43.73 29.54 68.60 2.03 45.75 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H 0.03 0.69 7.11 -2.39 -0.02 0.67 16 24 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 25 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 28 H 0.03 0.66 7.33 -2.39 -0.02 0.65 16 29 H 0.14 3.28 7.00 -2.91 -0.02 3.26 16 30 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.11 4.84 7.10 -2.91 -0.02 4.82 16 32 H 0.09 2.74 7.79 -2.39 -0.02 2.72 16 33 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 36 H 0.32 15.81 8.55 -89.70 -0.77 15.05 16 37 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -62.49 296.11 1.07 -61.42 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.29 Total: 25.04 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 4.45 Total: -28.86 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -5.69 Total: -103.35 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -62.49 1.07 -61.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.455 kcal (2) G-P(sol) polarization free energy of solvation -62.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds