Wall clock time and date at job start Mon Mar 30 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46901 * 111.00172 * 2 1 4 4 C 1.39674 * 111.00339 * 123.95381 * 2 1 3 5 5 C 1.38755 * 119.90427 * 299.98031 * 4 2 1 6 6 C 1.38091 * 119.74462 * 179.97438 * 5 4 2 7 7 C 1.38096 * 119.95165 * 359.90931 * 6 5 4 8 8 C 1.38762 * 120.53910 * 0.03649 * 7 6 5 9 9 C 1.37746 * 119.76350 * 0.13189 * 8 7 6 10 10 C 1.50705 * 121.69477 * 179.51953 * 9 8 7 11 11 C 1.52907 * 109.95029 * 16.98929 * 10 9 8 12 12 N 1.47151 * 108.49703 * 309.59625 * 11 10 9 13 13 C 1.46627 * 110.27127 * 71.21394 * 12 11 10 14 14 H 1.09002 * 109.26805 * 67.77101 * 13 12 11 15 15 C 1.50695 * 109.24023 * 187.25874 * 13 12 11 16 16 H 1.08001 * 120.00316 * 120.51291 * 15 13 12 17 17 C 1.37883 * 120.00082 * 300.51204 * 15 13 12 18 18 N 1.31515 * 119.99966 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99865 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47335 * 90.00190 * 19 17 15 21 21 H 1.48506 * 109.46876 * 210.00019 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99583 * 19 17 15 23 23 H 1.09004 * 109.47513 * 296.04562 * 1 2 3 24 24 H 1.09001 * 109.47432 * 56.04493 * 1 2 3 25 25 H 1.09001 * 109.47198 * 176.04508 * 1 2 3 26 26 H 1.08999 * 109.47249 * 183.95198 * 3 2 1 27 27 H 1.09007 * 109.47016 * 303.95499 * 3 2 1 28 28 H 1.09002 * 109.47241 * 63.95432 * 3 2 1 29 29 H 1.08011 * 120.12724 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.02087 * 179.91130 * 6 5 4 31 31 H 1.08000 * 119.73264 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.39379 * 137.13541 * 10 9 8 33 33 H 1.08998 * 109.39013 * 256.84676 * 10 9 8 34 34 H 1.09006 * 109.63115 * 69.28330 * 11 10 9 35 35 H 1.08994 * 109.63210 * 189.68320 * 11 10 9 36 36 H 1.00906 * 110.99669 * 307.78413 * 12 11 10 37 37 H 0.97001 * 119.99946 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9695 -0.7283 1.0816 5 6 1.6564 -0.3451 2.3779 6 6 2.1527 -1.0678 3.4448 7 6 2.9557 -2.1682 3.2182 8 6 3.2711 -2.5564 1.9239 9 6 2.7817 -1.8372 0.8559 10 6 3.1053 -2.2136 -0.5671 11 6 3.6346 -3.6472 -0.6201 12 7 4.7076 -3.7858 0.3774 13 6 4.1472 -3.7666 1.7322 14 1 3.5549 -4.6681 1.8893 15 6 5.2721 -3.7299 2.7344 16 1 5.3475 -2.9087 3.4317 17 6 6.2051 -4.7448 2.7610 18 7 6.1136 -5.7446 1.9115 19 14 7.5990 -4.6996 4.0037 20 1 7.1761 -5.3921 5.2474 21 1 8.7896 -5.3829 3.4371 22 1 7.9397 -3.2881 4.3144 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0709 26 1 3.0827 1.3432 -0.0708 27 1 1.5897 1.9164 -0.8525 28 1 1.7044 1.8724 0.9233 29 1 1.0268 0.5152 2.5518 30 1 1.9129 -0.7727 4.4557 31 1 3.3416 -2.7311 4.0552 32 1 2.2040 -2.1380 -1.1754 33 1 3.8622 -1.5338 -0.9581 34 1 2.8286 -4.3440 -0.3898 35 1 4.0264 -3.8563 -1.6154 36 1 5.4028 -3.0634 0.2634 37 1 6.7698 -6.4588 1.9305 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259810085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:25 Heat of formation + Delta-G solvation = 38.550614 kcal Electronic energy + Delta-G solvation = -18229.383561 eV Core-core repulsion = 15585.375373 eV Total energy + Delta-G solvation = -2644.008188 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85879 -37.15947 -35.11036 -32.88670 -30.70804 -29.87366 -27.98230 -27.52094 -25.31199 -24.23869 -22.49371 -22.09239 -20.02377 -19.04573 -16.60972 -16.24291 -15.34289 -15.01008 -14.88230 -14.51886 -14.01283 -13.66506 -13.50998 -12.89222 -12.65320 -12.54746 -12.26605 -11.97794 -11.79758 -11.65945 -11.54330 -11.03971 -10.90932 -10.85287 -10.69504 -10.53700 -10.09641 -9.82075 -9.08754 -8.48171 -8.31556 -7.93370 -7.76279 -6.87313 -5.90339 -4.05500 1.91196 2.03615 3.32694 3.40327 3.42980 4.07674 4.33394 4.48963 5.20203 5.27992 5.33922 5.36071 5.42092 5.51192 5.54724 5.77358 5.82315 5.87573 5.89129 5.91341 6.04807 6.11064 6.25953 6.32073 6.42840 6.66106 6.75174 6.85668 6.99754 7.02867 7.09666 7.33581 7.41376 7.48558 7.83731 7.89533 8.18946 8.57894 8.93501 9.08734 9.62898 11.13478 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031837 B = 0.007052 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.274983 B = 3969.799369 C = 4479.464830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.504 5.504 3 C 0.031 3.969 4 C 0.070 3.930 5 C -0.170 4.170 6 C -0.127 4.127 7 C -0.103 4.103 8 C -0.069 4.069 9 C -0.068 4.068 10 C -0.099 4.099 11 C 0.048 3.952 12 N -0.642 5.642 13 C 0.250 3.750 14 H 0.053 0.947 15 C -0.537 4.537 16 H 0.059 0.941 17 C 0.082 3.918 18 N -0.845 5.845 19 Si 0.884 3.116 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 H 0.026 0.974 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.326 0.674 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 10.006 -2.794 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.224 5.224 3 C -0.116 4.116 4 C -0.023 4.023 5 C -0.190 4.190 6 C -0.146 4.146 7 C -0.121 4.121 8 C -0.071 4.071 9 C -0.069 4.069 10 C -0.138 4.138 11 C -0.083 4.083 12 N -0.269 5.269 13 C 0.142 3.858 14 H 0.071 0.929 15 C -0.575 4.575 16 H 0.077 0.923 17 C -0.125 4.125 18 N -0.479 5.479 19 Si 0.712 3.288 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 H 0.045 0.955 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.383 8.885 -3.381 12.675 hybrid contribution 0.157 1.570 1.588 2.239 sum -8.225 10.456 -1.793 13.424 Atomic orbital electron populations 1.22399 0.86853 1.02348 1.00100 1.59530 1.07652 1.13398 1.41861 1.22388 1.01061 0.88049 1.00066 1.18608 0.99644 0.95939 0.88144 1.21230 1.03340 1.01004 0.93450 1.20909 0.99167 0.96723 0.97781 1.21338 0.96726 0.96223 0.97830 1.21342 0.95665 0.98352 0.91777 1.19546 0.97221 0.94314 0.95805 1.21007 1.01114 0.99039 0.92673 1.22126 0.95634 0.93234 0.97269 1.61287 1.11053 1.51744 1.02830 1.18205 0.91853 0.88500 0.87236 0.92920 1.21003 1.11284 1.08156 1.17101 0.92283 1.24983 0.97330 0.95253 0.94918 1.70116 1.34449 1.09423 1.33936 0.86748 0.82284 0.78125 0.81663 1.20740 1.21241 1.20006 0.95550 0.91521 0.91342 0.91312 0.91517 0.95571 0.87744 0.87178 0.85300 0.91194 0.91868 0.92222 0.92165 0.85667 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.34 60.06 0.56 0.93 16 2 N -0.50 -7.45 4.02 -186.78 -0.75 -8.20 16 3 C 0.03 0.40 9.38 60.07 0.56 0.96 16 4 C 0.07 1.22 4.71 -83.70 -0.39 0.83 16 5 C -0.17 -2.84 8.55 -39.44 -0.34 -3.18 16 6 C -0.13 -2.21 10.04 -39.69 -0.40 -2.61 16 7 C -0.10 -2.08 8.73 -39.44 -0.34 -2.42 16 8 C -0.07 -1.49 5.46 -104.64 -0.57 -2.06 16 9 C -0.07 -1.33 5.79 -104.41 -0.60 -1.94 16 10 C -0.10 -1.79 5.38 -27.93 -0.15 -1.95 16 11 C 0.05 0.95 6.62 -3.73 -0.02 0.92 16 12 N -0.64 -15.16 5.91 -109.28 -0.65 -15.81 16 13 C 0.25 6.18 2.40 -70.20 -0.17 6.01 16 14 H 0.05 1.46 8.14 -51.93 -0.42 1.03 16 15 C -0.54 -14.25 7.83 -34.44 -0.27 -14.52 16 16 H 0.06 1.56 6.72 -52.49 -0.35 1.21 16 17 C 0.08 2.23 5.38 -17.82 -0.10 2.13 16 18 N -0.84 -23.99 12.74 55.43 0.71 -23.29 16 19 Si 0.88 20.83 29.54 -169.99 -5.02 15.81 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.03 0.31 7.11 -51.93 -0.37 -0.06 16 24 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.03 0.32 7.33 -51.93 -0.38 -0.06 16 29 H 0.10 1.52 7.00 -52.48 -0.37 1.15 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.13 2.65 7.08 -52.49 -0.37 2.27 16 32 H 0.07 1.19 7.79 -51.93 -0.40 0.78 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.33 7.74 8.55 -39.29 -0.34 7.41 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 296.08 15.07 4.46 4.46 Total: -1.00 -28.27 296.08 -9.00 -37.27 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.51 Total: 6.65 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.23 Total: -16.89 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.69 Total: -47.29 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.27 -9.00 -37.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.820 kcal (2) G-P(sol) polarization free energy of solvation -28.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds