Wall clock time and date at job start Mon Mar 30 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46901 * 111.00172 * 2 1 4 4 C 1.39674 * 111.00339 * 123.95381 * 2 1 3 5 5 C 1.38755 * 119.90427 * 299.98031 * 4 2 1 6 6 C 1.38091 * 119.74462 * 179.97438 * 5 4 2 7 7 C 1.38096 * 119.95165 * 359.90931 * 6 5 4 8 8 C 1.38762 * 120.53910 * 0.03649 * 7 6 5 9 9 C 1.37746 * 119.76350 * 0.13189 * 8 7 6 10 10 C 1.50705 * 121.69477 * 179.51953 * 9 8 7 11 11 C 1.52907 * 109.95029 * 16.98929 * 10 9 8 12 12 N 1.47151 * 108.49703 * 309.59625 * 11 10 9 13 13 C 1.46627 * 110.27127 * 71.21394 * 12 11 10 14 14 H 1.09002 * 109.26805 * 67.77101 * 13 12 11 15 15 C 1.50695 * 109.24023 * 187.25874 * 13 12 11 16 16 H 1.08001 * 120.00316 * 120.51291 * 15 13 12 17 17 C 1.37883 * 120.00082 * 300.51204 * 15 13 12 18 18 N 1.31515 * 119.99966 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99865 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47335 * 90.00190 * 19 17 15 21 21 H 1.48506 * 109.46876 * 210.00019 * 19 17 15 22 22 H 1.48498 * 109.47403 * 329.99583 * 19 17 15 23 23 H 1.09004 * 109.47513 * 296.04562 * 1 2 3 24 24 H 1.09001 * 109.47432 * 56.04493 * 1 2 3 25 25 H 1.09001 * 109.47198 * 176.04508 * 1 2 3 26 26 H 1.08999 * 109.47249 * 183.95198 * 3 2 1 27 27 H 1.09007 * 109.47016 * 303.95499 * 3 2 1 28 28 H 1.09002 * 109.47241 * 63.95432 * 3 2 1 29 29 H 1.08011 * 120.12724 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.02087 * 179.91130 * 6 5 4 31 31 H 1.08000 * 119.73264 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.39379 * 137.13541 * 10 9 8 33 33 H 1.08998 * 109.39013 * 256.84676 * 10 9 8 34 34 H 1.09006 * 109.63115 * 69.28330 * 11 10 9 35 35 H 1.08994 * 109.63210 * 189.68320 * 11 10 9 36 36 H 1.00906 * 110.99669 * 307.78413 * 12 11 10 37 37 H 0.97001 * 119.99946 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9695 -0.7283 1.0816 5 6 1.6564 -0.3451 2.3779 6 6 2.1527 -1.0678 3.4448 7 6 2.9557 -2.1682 3.2182 8 6 3.2711 -2.5564 1.9239 9 6 2.7817 -1.8372 0.8559 10 6 3.1053 -2.2136 -0.5671 11 6 3.6346 -3.6472 -0.6201 12 7 4.7076 -3.7858 0.3774 13 6 4.1472 -3.7666 1.7322 14 1 3.5549 -4.6681 1.8893 15 6 5.2721 -3.7299 2.7344 16 1 5.3475 -2.9087 3.4317 17 6 6.2051 -4.7448 2.7610 18 7 6.1136 -5.7446 1.9115 19 14 7.5990 -4.6996 4.0037 20 1 7.1761 -5.3921 5.2474 21 1 8.7896 -5.3829 3.4371 22 1 7.9397 -3.2881 4.3144 23 1 -0.3634 0.4512 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0709 26 1 3.0827 1.3432 -0.0708 27 1 1.5897 1.9164 -0.8525 28 1 1.7044 1.8724 0.9233 29 1 1.0268 0.5152 2.5518 30 1 1.9129 -0.7727 4.4557 31 1 3.3416 -2.7311 4.0552 32 1 2.2040 -2.1380 -1.1754 33 1 3.8622 -1.5338 -0.9581 34 1 2.8286 -4.3440 -0.3898 35 1 4.0264 -3.8563 -1.6154 36 1 5.4028 -3.0634 0.2634 37 1 6.7698 -6.4588 1.9305 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259810085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:25 Heat of formation + Delta-G solvation = 21.000509 kcal Electronic energy + Delta-G solvation = -18230.144591 eV Core-core repulsion = 15585.375373 eV Total energy + Delta-G solvation = -2644.769218 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.28464 -38.58150 -36.57068 -34.80339 -32.41231 -31.42899 -29.47424 -28.46621 -27.23643 -25.46079 -24.10655 -23.76152 -21.45374 -20.62173 -18.51914 -17.66235 -16.76970 -16.52483 -16.32587 -15.98927 -15.54086 -15.22604 -14.91303 -14.44532 -14.19809 -14.09674 -13.56811 -13.29451 -13.13542 -13.05711 -12.81345 -12.61781 -12.59475 -12.52879 -12.29472 -12.10177 -11.85853 -11.63162 -10.99059 -10.55411 -9.42381 -9.35105 -9.33899 -8.65829 -7.97386 -6.18746 0.47213 0.56681 1.44396 1.45966 1.55162 2.46985 2.88203 2.96924 3.24630 3.92163 4.00444 4.12124 4.25854 4.32324 4.35589 4.42369 4.45146 4.55272 4.64271 4.69111 4.81094 4.85020 4.92984 4.97925 4.98896 5.10557 5.17418 5.39961 5.41465 5.57677 5.66851 5.74702 5.81346 5.99992 6.01341 6.21545 6.53523 6.65817 7.07540 7.09339 7.52965 9.06001 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031837 B = 0.007052 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.274983 B = 3969.799369 C = 4479.464830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.516 5.516 3 C 0.031 3.969 4 C 0.079 3.921 5 C -0.162 4.162 6 C -0.120 4.120 7 C -0.124 4.124 8 C -0.096 4.096 9 C -0.085 4.085 10 C -0.084 4.084 11 C 0.051 3.949 12 N -0.661 5.661 13 C 0.257 3.743 14 H 0.007 0.993 15 C -0.545 4.545 16 H 0.055 0.945 17 C 0.035 3.965 18 N -0.880 5.880 19 Si 0.949 3.051 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.271 1.271 23 H 0.035 0.965 24 H 0.092 0.908 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.034 0.966 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.322 0.678 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 12.577 -2.931 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.237 5.237 3 C -0.115 4.115 4 C -0.015 4.015 5 C -0.182 4.182 6 C -0.138 4.138 7 C -0.143 4.143 8 C -0.099 4.099 9 C -0.087 4.087 10 C -0.122 4.122 11 C -0.079 4.079 12 N -0.288 5.288 13 C 0.149 3.851 14 H 0.025 0.975 15 C -0.583 4.583 16 H 0.073 0.927 17 C -0.169 4.169 18 N -0.515 5.515 19 Si 0.775 3.225 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.196 1.196 23 H 0.053 0.947 24 H 0.111 0.889 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.154 0.846 30 H 0.158 0.842 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.139 0.861 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.493 11.471 -3.518 15.300 hybrid contribution 0.387 0.839 1.597 1.845 sum -9.106 12.310 -1.920 15.432 Atomic orbital electron populations 1.22470 0.85062 1.02411 1.01741 1.59526 1.09191 1.14465 1.40564 1.22447 1.00419 0.86945 1.01696 1.18728 0.98201 0.95053 0.89514 1.21575 1.02595 1.01273 0.92763 1.21175 0.97663 0.95252 0.99736 1.21304 0.98400 0.97746 0.96810 1.21064 0.97047 0.98401 0.93393 1.19712 0.97998 0.95256 0.95686 1.20840 1.01665 0.97387 0.92358 1.22131 0.94391 0.94475 0.96915 1.61102 1.12416 1.52038 1.03202 1.17811 0.91335 0.88386 0.87599 0.97491 1.21280 1.11752 1.07858 1.17429 0.92693 1.25702 0.99648 0.94929 0.96628 1.70250 1.35394 1.10131 1.35753 0.85724 0.79263 0.78102 0.79409 1.20229 1.21083 1.19593 0.94676 0.88935 0.92307 0.92582 0.88876 0.94768 0.84632 0.84197 0.86874 0.89627 0.91412 0.93489 0.90409 0.86083 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.34 127.69 1.19 1.81 16 2 N -0.52 -13.51 4.02 -744.85 -3.00 -16.51 16 3 C 0.03 0.67 9.38 127.69 1.20 1.87 16 4 C 0.08 2.56 4.71 38.27 0.18 2.74 16 5 C -0.16 -4.89 8.55 22.36 0.19 -4.70 16 6 C -0.12 -3.93 10.04 22.20 0.22 -3.71 16 7 C -0.12 -5.08 8.73 22.36 0.20 -4.88 16 8 C -0.10 -4.30 5.46 -19.88 -0.11 -4.41 16 9 C -0.09 -3.31 5.79 -19.72 -0.11 -3.42 16 10 C -0.08 -2.96 5.38 29.82 0.16 -2.80 16 11 C 0.05 2.04 6.62 86.22 0.57 2.61 16 12 N -0.66 -32.36 5.91 -499.67 -2.95 -35.31 16 13 C 0.26 13.34 2.40 43.45 0.10 13.45 16 14 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 15 C -0.54 -30.03 7.83 25.60 0.20 -29.83 16 16 H 0.05 3.00 6.72 -2.91 -0.02 2.98 16 17 C 0.03 1.93 5.38 84.66 0.46 2.39 16 18 N -0.88 -51.70 12.74 21.45 0.27 -51.43 16 19 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H 0.03 0.67 7.11 -2.38 -0.02 0.65 16 24 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.51 8.12 -2.38 -0.02 1.49 16 28 H 0.03 0.68 7.33 -2.39 -0.02 0.66 16 29 H 0.14 3.28 7.00 -2.91 -0.02 3.26 16 30 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.11 4.85 7.08 -2.91 -0.02 4.83 16 32 H 0.09 2.75 7.79 -2.39 -0.02 2.73 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.05 1.97 8.05 -2.38 -0.02 1.95 16 35 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.32 15.82 8.55 -89.69 -0.77 15.05 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -62.50 296.08 1.09 -61.40 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.29 Total: 24.99 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 4.45 Total: -28.89 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -5.67 Total: -103.25 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -62.50 1.09 -61.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259810085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.403 kcal (2) G-P(sol) polarization free energy of solvation -62.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds