Wall clock time and date at job start Mon Mar 30 2020 03:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.70474 * 304.39970 * 10 9 7 12 12 N 1.47318 * 109.71647 * 64.99114 * 10 9 7 13 13 C 1.46949 * 111.46273 * 170.86846 * 12 10 9 14 14 C 1.53523 * 109.67761 * 288.63968 * 13 12 10 15 15 C 1.50921 * 107.80705 * 49.13383 * 14 13 12 16 16 C 1.35315 * 123.16824 * 344.16216 * 15 14 13 17 17 C 1.39943 * 107.54419 * 179.79250 * 16 15 14 18 18 C 1.35369 * 107.23766 * 0.08597 * 17 16 15 19 19 N 1.36156 * 128.35402 * 164.16451 * 15 14 13 20 20 C 1.47314 * 141.24520 * 0.36710 * 19 15 14 21 21 C 1.54289 * 105.71320 * 197.24027 * 20 19 15 22 22 C 1.51423 * 141.51420 * 180.16525 * 18 17 16 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 26 26 H 1.00906 * 110.99414 * 46.58491 * 12 10 9 27 27 H 1.09004 * 109.43073 * 48.70310 * 13 12 10 28 28 H 1.08993 * 109.43455 * 168.57348 * 13 12 10 29 29 H 1.09005 * 109.78809 * 168.70284 * 14 13 12 30 30 H 1.08990 * 109.79207 * 289.49657 * 14 13 12 31 31 H 1.07994 * 126.37738 * 180.10537 * 17 16 15 32 32 H 1.09003 * 110.19732 * 316.29894 * 20 19 15 33 33 H 1.08997 * 110.20227 * 78.18003 * 20 19 15 34 34 H 1.09001 * 110.93028 * 91.99817 * 21 20 19 35 35 H 1.08999 * 110.93039 * 215.65842 * 21 20 19 36 36 H 1.08999 * 110.47119 * 44.52365 * 22 18 17 37 37 H 1.09004 * 110.58058 * 281.98589 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 1 3.5971 -3.1773 0.8446 12 7 3.6350 -3.2992 -1.2590 13 6 4.2844 -4.6100 -1.3979 14 6 5.7818 -4.4180 -1.6772 15 6 6.3195 -3.4412 -0.6602 16 6 5.5261 -2.6441 0.0923 17 6 6.3578 -1.8810 0.9195 18 6 7.6342 -2.2367 0.6429 19 7 7.6170 -3.1939 -0.3299 20 6 8.9885 -3.6098 -0.6708 21 6 9.8732 -3.1313 0.4992 22 6 9.0625 -1.9352 1.0455 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 -0.8895 25 1 3.8746 -0.6808 0.8905 26 1 3.8347 -2.7107 -2.0540 27 1 4.1572 -5.1773 -0.4758 28 1 3.8283 -5.1551 -2.2242 29 1 6.3002 -5.3722 -1.5824 30 1 5.9217 -4.0203 -2.6822 31 1 6.0403 -1.1456 1.6439 32 1 9.0409 -4.6946 -0.7631 33 1 9.3053 -3.1365 -1.6002 34 1 9.9747 -3.9105 1.2546 35 1 10.8508 -2.8082 0.1413 36 1 9.1490 -1.8798 2.1307 37 1 9.4010 -1.0049 0.5892 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259841688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:48 Heat of formation + Delta-G solvation = 54.030776 kcal Electronic energy + Delta-G solvation = -17958.277049 eV Core-core repulsion = 15314.940131 eV Total energy + Delta-G solvation = -2643.336918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.65802 -37.64530 -34.55795 -33.28335 -31.79227 -30.22188 -28.61329 -27.48274 -25.68372 -23.81552 -22.03863 -21.53751 -20.28079 -19.11482 -18.31148 -16.55954 -16.38658 -15.75830 -14.67421 -14.35576 -14.09523 -13.74131 -13.51213 -13.22928 -13.02904 -12.82021 -12.58883 -12.29917 -11.94939 -11.83223 -11.67085 -11.57205 -11.28585 -11.05776 -10.80080 -10.66041 -10.16334 -9.75761 -9.53059 -8.99672 -8.35975 -8.07186 -7.70299 -7.34427 -5.84552 -3.78855 2.44572 3.02277 3.36132 3.42225 3.49410 3.54874 4.13836 4.51790 4.55390 4.61478 4.92492 4.98220 5.00029 5.16451 5.28727 5.34279 5.43446 5.47775 5.52440 5.65079 5.70959 5.79571 5.94139 6.02876 6.10356 6.26447 6.44474 6.61870 6.63457 6.90092 7.26958 7.39082 7.45641 7.50852 7.77674 7.89131 8.00678 8.19725 8.78630 9.28917 9.78890 11.29341 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027521 B = 0.006747 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.161598 B = 4148.771866 C = 4951.800388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.063 3.937 3 Si 0.872 3.128 4 H -0.279 1.279 5 H -0.267 1.267 6 H -0.291 1.291 7 C -0.496 4.496 8 H 0.081 0.919 9 C -0.001 4.001 10 C 0.174 3.826 11 H 0.081 0.919 12 N -0.662 5.662 13 C 0.065 3.935 14 C -0.083 4.083 15 C 0.018 3.982 16 C -0.172 4.172 17 C -0.155 4.155 18 C -0.027 4.027 19 N -0.465 5.465 20 C 0.108 3.892 21 C -0.130 4.130 22 C -0.055 4.055 23 H 0.259 0.741 24 H 0.014 0.986 25 H 0.018 0.982 26 H 0.340 0.660 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.546 -7.781 -1.213 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.137 4.137 3 Si 0.700 3.300 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.217 1.217 7 C -0.534 4.534 8 H 0.099 0.901 9 C -0.038 4.038 10 C 0.064 3.936 11 H 0.099 0.901 12 N -0.289 5.289 13 C -0.066 4.066 14 C -0.123 4.123 15 C -0.092 4.092 16 C -0.180 4.180 17 C -0.180 4.180 18 C -0.138 4.138 19 N -0.143 5.143 20 C -0.013 4.013 21 C -0.168 4.168 22 C -0.093 4.093 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.158 0.842 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.151 0.849 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.023 -8.200 -1.226 21.672 hybrid contribution 1.509 1.246 -0.260 1.974 sum 21.532 -6.953 -1.487 22.676 Atomic orbital electron populations 1.69921 1.06152 1.26345 1.52422 1.24999 0.94640 0.98705 0.95335 0.86900 0.80427 0.84352 0.78311 1.20546 1.19183 1.21704 1.21136 0.89060 0.94573 1.48628 0.90103 1.19605 0.97377 0.90411 0.96439 1.20137 0.84490 0.97447 0.91560 0.90148 1.60651 1.59418 1.03836 1.05019 1.22058 0.88766 0.93864 1.01883 1.20994 0.99173 0.96201 0.95949 1.19871 0.80464 1.04433 1.04384 1.20568 0.97728 0.99655 1.00055 1.19899 0.89499 1.04280 1.04339 1.21547 0.95478 0.98506 0.98301 1.44928 1.04168 1.33131 1.32090 1.22225 0.79393 1.00669 0.99022 1.22624 0.98348 0.98629 0.97172 1.20616 0.88938 0.97933 1.01777 0.93104 0.96813 0.96342 0.84192 0.91151 0.90637 0.91788 0.91445 0.84911 0.90306 0.90461 0.90106 0.89144 0.89864 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.80 13.96 55.43 0.77 -28.03 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.87 22.47 27.47 -169.99 -4.67 17.80 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.27 -6.70 6.54 56.52 0.37 -6.33 16 6 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 7 C -0.50 -14.44 9.40 -34.44 -0.32 -14.76 16 8 H 0.08 2.56 7.99 -52.49 -0.42 2.14 16 9 C 0.00 -0.02 3.43 -27.88 -0.10 -0.11 16 10 C 0.17 3.74 2.79 -68.61 -0.19 3.54 16 11 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 12 N -0.66 -13.09 6.32 -107.29 -0.68 -13.77 16 13 C 0.07 1.02 6.54 -3.53 -0.02 0.99 16 14 C -0.08 -1.18 6.43 -27.50 -0.18 -1.36 16 15 C 0.02 0.31 7.13 -81.61 -0.58 -0.27 16 16 C -0.17 -3.34 5.51 -105.00 -0.58 -3.92 16 17 C -0.15 -2.86 10.30 -39.97 -0.41 -3.28 16 18 C -0.03 -0.43 7.43 -81.19 -0.60 -1.03 16 19 N -0.46 -6.97 3.59 -106.03 -0.38 -7.35 16 20 C 0.11 1.09 7.77 -2.92 -0.02 1.07 16 21 C -0.13 -1.04 7.15 -25.28 -0.18 -1.22 16 22 C -0.05 -0.58 6.85 -26.75 -0.18 -0.77 16 23 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 24 H 0.01 0.35 7.15 -51.93 -0.37 -0.02 16 25 H 0.02 0.46 7.11 -51.93 -0.37 0.09 16 26 H 0.34 6.71 8.55 -39.29 -0.34 6.37 16 27 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.13 2.40 7.89 -52.49 -0.41 1.99 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -33.53 294.78 -9.71 -43.24 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.72 Total: 2.99 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -3.47 Total: -19.33 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.28 Total: -49.14 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.53 -9.71 -43.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259841688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.270 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds