Wall clock time and date at job start Mon Mar 30 2020 03:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.70474 * 304.39970 * 10 9 7 12 12 N 1.47318 * 109.71647 * 64.99114 * 10 9 7 13 13 C 1.46949 * 111.46273 * 170.86846 * 12 10 9 14 14 C 1.53523 * 109.67761 * 288.63968 * 13 12 10 15 15 C 1.50921 * 107.80705 * 49.13383 * 14 13 12 16 16 C 1.35315 * 123.16824 * 344.16216 * 15 14 13 17 17 C 1.39943 * 107.54419 * 179.79250 * 16 15 14 18 18 C 1.35369 * 107.23766 * 0.08597 * 17 16 15 19 19 N 1.36156 * 128.35402 * 164.16451 * 15 14 13 20 20 C 1.47314 * 141.24520 * 0.36710 * 19 15 14 21 21 C 1.54289 * 105.71320 * 197.24027 * 20 19 15 22 22 C 1.51423 * 141.51420 * 180.16525 * 18 17 16 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 26 26 H 1.00906 * 110.99414 * 46.58491 * 12 10 9 27 27 H 1.09004 * 109.43073 * 48.70310 * 13 12 10 28 28 H 1.08993 * 109.43455 * 168.57348 * 13 12 10 29 29 H 1.09005 * 109.78809 * 168.70284 * 14 13 12 30 30 H 1.08990 * 109.79207 * 289.49657 * 14 13 12 31 31 H 1.07994 * 126.37738 * 180.10537 * 17 16 15 32 32 H 1.09003 * 110.19732 * 316.29894 * 20 19 15 33 33 H 1.08997 * 110.20227 * 78.18003 * 20 19 15 34 34 H 1.09001 * 110.93028 * 91.99817 * 21 20 19 35 35 H 1.08999 * 110.93039 * 215.65842 * 21 20 19 36 36 H 1.08999 * 110.47119 * 44.52365 * 22 18 17 37 37 H 1.09004 * 110.58058 * 281.98589 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 1 3.5971 -3.1773 0.8446 12 7 3.6350 -3.2992 -1.2590 13 6 4.2844 -4.6100 -1.3979 14 6 5.7818 -4.4180 -1.6772 15 6 6.3195 -3.4412 -0.6602 16 6 5.5261 -2.6441 0.0923 17 6 6.3578 -1.8810 0.9195 18 6 7.6342 -2.2367 0.6429 19 7 7.6170 -3.1939 -0.3299 20 6 8.9885 -3.6098 -0.6708 21 6 9.8732 -3.1313 0.4992 22 6 9.0625 -1.9352 1.0455 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 -0.8895 25 1 3.8746 -0.6808 0.8905 26 1 3.8347 -2.7107 -2.0540 27 1 4.1572 -5.1773 -0.4758 28 1 3.8283 -5.1551 -2.2242 29 1 6.3002 -5.3722 -1.5824 30 1 5.9217 -4.0203 -2.6822 31 1 6.0403 -1.1456 1.6439 32 1 9.0409 -4.6946 -0.7631 33 1 9.3053 -3.1365 -1.6002 34 1 9.9747 -3.9105 1.2546 35 1 10.8508 -2.8082 0.1413 36 1 9.1490 -1.8798 2.1307 37 1 9.4010 -1.0049 0.5892 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259841688.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:47 Heat of formation + Delta-G solvation = 31.439472 kcal Electronic energy + Delta-G solvation = -17959.256682 eV Core-core repulsion = 15314.940131 eV Total energy + Delta-G solvation = -2644.316551 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.83396 -38.97044 -35.66400 -35.16876 -33.56989 -31.55956 -29.96312 -28.99555 -26.81319 -25.44325 -23.29165 -22.98760 -21.53823 -20.48384 -19.67366 -18.59911 -17.47665 -16.85069 -16.37435 -15.90442 -15.57028 -15.16318 -14.74919 -14.46717 -14.35565 -14.09726 -13.92214 -13.76322 -13.40569 -13.08803 -12.98347 -12.91921 -12.52519 -12.39365 -12.30045 -11.95452 -11.77153 -11.58748 -11.41583 -11.25074 -10.69023 -9.36468 -9.18707 -8.61836 -8.18851 -6.18636 1.24455 1.36050 1.37422 1.50163 1.97174 2.00094 2.41478 3.13823 3.34709 3.51448 3.66820 3.90926 3.94043 4.11398 4.12534 4.26433 4.39443 4.47982 4.61336 4.63561 4.68160 4.73869 4.86717 4.90325 4.92434 5.00600 5.03851 5.15365 5.24144 5.31633 5.44402 5.57188 5.73719 6.10071 6.16851 6.36446 6.49006 6.61897 6.65231 6.89447 7.42783 8.98399 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027521 B = 0.006747 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.161598 B = 4148.771866 C = 4951.800388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.003 3.997 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.256 1.256 6 H -0.283 1.283 7 C -0.499 4.499 8 H 0.039 0.961 9 C 0.011 3.989 10 C 0.184 3.816 11 H 0.053 0.947 12 N -0.682 5.682 13 C 0.066 3.934 14 C -0.072 4.072 15 C 0.016 3.984 16 C -0.209 4.209 17 C -0.201 4.201 18 C -0.020 4.020 19 N -0.463 5.463 20 C 0.096 3.904 21 C -0.116 4.116 22 C -0.057 4.057 23 H 0.263 0.737 24 H 0.010 0.990 25 H 0.015 0.985 26 H 0.338 0.662 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.588 -8.075 -2.084 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.192 4.192 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.180 1.180 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.057 0.943 9 C -0.027 4.027 10 C 0.073 3.927 11 H 0.071 0.929 12 N -0.310 5.310 13 C -0.064 4.064 14 C -0.112 4.112 15 C -0.096 4.096 16 C -0.217 4.217 17 C -0.226 4.226 18 C -0.133 4.133 19 N -0.140 5.140 20 C -0.023 4.023 21 C -0.154 4.154 22 C -0.095 4.095 23 H 0.072 0.928 24 H 0.028 0.972 25 H 0.034 0.966 26 H 0.156 0.844 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 24.104 -8.522 -2.100 25.652 hybrid contribution 0.249 1.235 0.023 1.260 sum 24.353 -7.287 -2.077 25.504 Atomic orbital electron populations 1.70072 1.08022 1.27608 1.53886 1.25890 0.95507 1.02858 0.94978 0.85755 0.79253 0.79231 0.78927 1.19439 1.18027 1.20914 1.21318 0.91272 0.93089 1.48052 0.94256 1.19426 0.94347 0.93117 0.95775 1.19667 0.86538 0.94863 0.91623 0.92942 1.60576 1.61027 1.05345 1.04098 1.22133 0.90192 0.91599 1.02498 1.20943 0.97662 0.96929 0.95656 1.20100 0.81424 1.04052 1.04018 1.20323 0.96456 1.02306 1.02592 1.19983 0.91379 1.05671 1.05566 1.22153 0.96579 0.97263 0.97284 1.45316 1.05168 1.32339 1.31181 1.22705 0.76748 1.02212 1.00637 1.22694 0.98905 0.97402 0.96352 1.20834 0.86011 0.99821 1.02826 0.92829 0.97219 0.96648 0.84404 0.91918 0.88255 0.88956 0.90162 0.86195 0.88394 0.88872 0.89225 0.85630 0.88754 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.54 13.96 21.45 0.30 -62.24 16 2 C 0.00 0.19 5.47 84.66 0.46 0.66 16 3 Si 0.94 47.31 27.47 68.60 1.88 49.20 16 4 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.26 -12.29 6.54 99.48 0.65 -11.64 16 6 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 7 C -0.50 -30.51 9.40 25.60 0.24 -30.27 16 8 H 0.04 2.66 7.99 -2.91 -0.02 2.64 16 9 C 0.01 0.57 3.43 29.85 0.10 0.67 16 10 C 0.18 8.30 2.79 44.10 0.12 8.42 16 11 H 0.05 2.58 8.14 -2.38 -0.02 2.56 16 12 N -0.68 -27.84 6.32 -493.37 -3.12 -30.96 16 13 C 0.07 2.01 6.54 86.47 0.57 2.58 16 14 C -0.07 -1.89 6.43 30.09 0.19 -1.69 16 15 C 0.02 0.51 7.13 41.28 0.29 0.81 16 16 C -0.21 -8.26 5.51 -20.11 -0.11 -8.37 16 17 C -0.20 -7.57 10.30 22.02 0.23 -7.34 16 18 C -0.02 -0.59 7.43 41.40 0.31 -0.28 16 19 N -0.46 -12.62 3.59 -489.36 -1.75 -14.38 16 20 C 0.10 1.49 7.77 86.66 0.67 2.16 16 21 C -0.12 -1.26 7.15 31.54 0.23 -1.04 16 22 C -0.06 -1.01 6.85 30.58 0.21 -0.80 16 23 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 24 H 0.01 0.50 7.15 -2.38 -0.02 0.48 16 25 H 0.02 0.79 7.11 -2.39 -0.02 0.78 16 26 H 0.34 13.64 8.55 -89.69 -0.77 12.88 16 27 H 0.06 1.99 8.07 -2.38 -0.02 1.97 16 28 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.12 4.59 7.89 -2.91 -0.02 4.57 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -76.72 294.78 1.06 -75.67 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.23 Total: 17.21 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 3.51 Total: -34.50 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.57 Total: -107.58 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.88 Total: 49.20 kcal Total: -76.72 1.06 -75.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259841688.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.105 kcal (2) G-P(sol) polarization free energy of solvation -76.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds