Wall clock time and date at job start Mon Mar 30 2020 04:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47167 * 111.00193 * 2 1 4 4 C 1.52902 * 108.50385 * 52.15226 * 3 2 1 5 5 C 1.50717 * 109.95267 * 50.39739 * 4 3 2 6 6 C 1.38684 * 118.48614 * 163.47230 * 5 4 3 7 7 C 1.38031 * 120.34981 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.08504 * 179.78172 * 7 6 5 9 9 H 1.08992 * 109.47284 * 339.72774 * 8 7 6 10 10 N 1.46906 * 109.46922 * 219.72385 * 8 7 6 11 11 C 1.50703 * 109.47064 * 99.72558 * 8 7 6 12 12 H 1.08004 * 119.99786 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00098 * 179.97438 * 11 8 7 14 14 N 1.31508 * 120.00316 * 179.97438 * 13 11 8 15 15 Si 1.86804 * 119.99909 * 0.02562 * 13 11 8 16 16 H 1.48503 * 109.46782 * 89.99440 * 15 13 11 17 17 H 1.48494 * 109.47234 * 209.99641 * 15 13 11 18 18 H 1.48497 * 109.47042 * 329.99800 * 15 13 11 19 19 C 1.38264 * 119.82548 * 359.50555 * 7 6 5 20 20 C 1.38010 * 119.87057 * 0.32487 * 19 7 6 21 21 C 1.37826 * 121.66638 * 343.09248 * 5 4 3 22 22 C 1.46639 * 111.00219 * 122.98588 * 2 1 3 23 23 H 1.09004 * 109.47179 * 300.95859 * 1 2 3 24 24 H 1.08992 * 109.47547 * 60.96372 * 1 2 3 25 25 H 1.08999 * 109.47088 * 180.96516 * 1 2 3 26 26 H 1.08992 * 109.63385 * 171.86296 * 3 2 1 27 27 H 1.09002 * 109.62561 * 292.25840 * 3 2 1 28 28 H 1.08994 * 109.39022 * 170.54275 * 4 3 2 29 29 H 1.09001 * 109.39363 * 290.34583 * 4 3 2 30 30 H 1.08005 * 119.82563 * 359.75293 * 6 5 4 31 31 H 1.00902 * 110.99567 * 299.99689 * 10 8 7 32 32 H 1.00901 * 111.00013 * 63.95541 * 10 8 7 33 33 H 0.96996 * 120.00419 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.06171 * 180.34268 * 19 7 6 35 35 H 1.07998 * 119.81022 * 179.97438 * 20 19 7 36 36 H 1.08998 * 109.29637 * 168.78473 * 22 2 1 37 37 H 1.09001 * 109.12866 * 49.31516 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3739 0.0000 4 6 1.3398 2.1458 1.1450 5 6 1.4525 1.3600 2.4261 6 6 1.2386 2.0193 3.6274 7 6 1.3326 1.3371 4.8237 8 6 1.1039 2.0605 6.1258 9 1 1.2351 3.1318 5.9742 10 7 2.0695 1.5856 7.1259 11 6 -0.2967 1.7897 6.6116 12 1 -0.9552 1.1567 6.0353 13 6 -0.7371 2.3492 7.7923 14 7 -1.9595 2.1133 8.2160 15 14 0.4021 3.4434 8.7894 16 1 0.2433 4.8533 8.3509 17 1 0.0603 3.3316 10.2301 18 1 1.8085 3.0153 8.5797 19 6 1.6315 -0.0128 4.8239 20 6 1.8410 -0.6706 3.6288 21 6 1.7524 0.0148 2.4259 22 6 1.9945 -0.7453 1.1483 23 1 -0.3634 0.5287 0.8813 24 1 -0.3634 0.4987 -0.8984 25 1 -0.3633 -1.0275 0.0173 26 1 3.0764 1.3516 0.1453 27 1 1.7645 1.8551 -0.9502 28 1 1.8379 3.1077 1.2654 29 1 0.2872 2.3098 0.9141 30 1 1.0016 3.0730 3.6271 31 1 1.9679 0.5943 7.2843 32 1 3.0139 1.8134 6.8534 33 1 -2.2695 2.5072 9.0464 34 1 1.7005 -0.5515 5.7574 35 1 2.0748 -1.7250 3.6302 36 1 3.0657 -0.8993 1.0181 37 1 1.4958 -1.7129 1.2047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259877539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:07 Heat of formation + Delta-G solvation = 34.434405 kcal Electronic energy + Delta-G solvation = -17882.727786 eV Core-core repulsion = 15238.541105 eV Total energy + Delta-G solvation = -2644.186681 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22637 -37.52617 -34.54093 -32.53360 -31.87732 -30.10785 -29.04750 -27.30108 -26.08446 -23.89951 -22.88920 -21.85255 -20.71960 -18.53643 -16.86031 -16.21259 -15.70982 -15.16479 -15.14877 -14.67315 -14.30577 -13.99613 -13.80670 -13.60000 -12.77778 -12.60816 -12.31693 -12.13871 -12.01578 -11.79679 -11.58811 -11.48653 -11.35289 -11.02992 -10.75861 -10.36998 -10.12761 -9.93064 -9.27867 -8.55519 -8.37314 -8.27646 -7.89306 -7.22219 -6.01755 -4.12100 1.80928 1.85732 3.49546 3.59982 3.91300 3.98736 4.19426 4.69438 4.82339 4.98019 5.02699 5.11235 5.27107 5.30712 5.35066 5.53565 5.57681 5.63382 5.74779 5.75958 5.77959 5.87442 5.91518 6.00419 6.08325 6.09700 6.41416 6.52532 6.76169 6.79156 6.93874 6.96408 7.10052 7.28602 7.48023 7.61280 8.15393 8.31859 8.68209 8.98538 9.62291 11.07972 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038115 B = 0.005749 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.451181 B = 4869.475449 C = 4948.247136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.532 5.532 3 C 0.053 3.947 4 C -0.115 4.115 5 C -0.082 4.082 6 C -0.119 4.119 7 C -0.062 4.062 8 C 0.218 3.782 9 H 0.044 0.956 10 N -0.834 5.834 11 C -0.520 4.520 12 H 0.068 0.932 13 C 0.085 3.915 14 N -0.900 5.900 15 Si 0.867 3.133 16 H -0.297 1.297 17 H -0.304 1.304 18 H -0.192 1.192 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.140 4.140 22 C 0.097 3.903 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.330 0.670 32 H 0.308 0.692 33 H 0.263 0.737 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.288 -3.129 -14.278 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.254 5.254 3 C -0.076 4.076 4 C -0.154 4.154 5 C -0.082 4.082 6 C -0.137 4.137 7 C -0.064 4.064 8 C 0.108 3.892 9 H 0.061 0.939 10 N -0.363 5.363 11 C -0.558 4.558 12 H 0.086 0.914 13 C -0.120 4.120 14 N -0.537 5.537 15 Si 0.694 3.306 16 H -0.225 1.225 17 H -0.231 1.231 18 H -0.114 1.114 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.032 4.032 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.957 -2.862 -14.092 16.941 hybrid contribution 0.160 0.370 0.711 0.817 sum 9.117 -2.492 -13.381 16.382 Atomic orbital electron populations 1.22463 0.87531 1.02130 1.01210 1.62731 1.08447 1.13974 1.40207 1.22203 0.99664 0.88169 0.97514 1.21065 1.01980 0.99025 0.93298 1.19389 1.01033 0.93208 0.94565 1.20986 1.01324 0.99943 0.91481 1.21203 0.93223 0.94363 0.97616 1.18589 0.93312 0.94038 0.83218 0.93855 1.60080 1.06288 1.20941 1.48948 1.20711 0.94383 1.32734 1.07941 0.91386 1.24992 0.94693 0.95422 0.96844 1.69954 1.17295 1.44213 1.22200 0.87202 0.87235 0.78676 0.77519 1.22501 1.23115 1.11356 1.20905 1.00603 0.94518 0.97555 1.20921 1.01303 0.99061 0.92120 1.20055 1.04176 0.94049 0.95845 1.21034 1.00574 0.96235 0.85317 0.94097 0.91612 0.91619 0.90643 0.90369 0.90512 0.90564 0.86617 0.85651 0.88147 0.92773 0.86400 0.86917 0.90033 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.84 60.06 0.53 0.71 16 2 N -0.53 -6.42 5.28 -244.49 -1.29 -7.71 16 3 C 0.05 0.59 6.06 -3.73 -0.02 0.56 16 4 C -0.12 -1.47 5.16 -27.93 -0.14 -1.62 16 5 C -0.08 -1.30 5.07 -104.60 -0.53 -1.83 16 6 C -0.12 -2.19 9.28 -39.49 -0.37 -2.56 16 7 C -0.06 -1.24 4.88 -104.69 -0.51 -1.75 16 8 C 0.22 4.95 2.35 -70.01 -0.16 4.78 16 9 H 0.04 1.02 7.43 -51.93 -0.39 0.63 16 10 N -0.83 -16.99 5.66 -6.65 -0.04 -17.03 16 11 C -0.52 -14.52 9.29 -34.44 -0.32 -14.84 16 12 H 0.07 2.12 7.98 -52.48 -0.42 1.70 16 13 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 14 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 15 Si 0.87 21.64 26.94 -169.99 -4.58 17.06 16 16 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 17 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 18 H -0.19 -4.41 5.17 56.52 0.29 -4.12 16 19 C -0.12 -2.15 9.29 -39.66 -0.37 -2.52 16 20 C -0.12 -1.84 9.65 -39.48 -0.38 -2.22 16 21 C -0.14 -2.13 5.33 -104.63 -0.56 -2.68 16 22 C 0.10 1.20 5.54 -5.16 -0.03 1.17 16 23 H 0.04 0.56 5.51 -51.93 -0.29 0.27 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.73 8.04 -51.93 -0.42 0.31 16 26 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.98 6.82 -51.93 -0.35 0.62 16 30 H 0.12 2.07 8.04 -52.48 -0.42 1.65 16 31 H 0.33 6.49 7.35 -39.29 -0.29 6.20 16 32 H 0.31 5.44 9.06 -39.29 -0.36 5.08 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.12 2.10 6.68 -52.49 -0.35 1.75 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.94 7.97 -51.93 -0.41 0.52 16 LS Contribution 289.29 15.07 4.36 4.36 Total: -1.00 -31.24 289.29 -9.20 -40.45 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.47 Total: 10.49 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.96 Total: -20.44 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.55 Total: -51.91 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.58 Total: 17.06 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.24 -9.20 -40.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.880 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds