Wall clock time and date at job start Mon Mar 30 2020 04:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47167 * 111.00193 * 2 1 4 4 C 1.52902 * 108.50385 * 52.15226 * 3 2 1 5 5 C 1.50717 * 109.95267 * 50.39739 * 4 3 2 6 6 C 1.38684 * 118.48614 * 163.47230 * 5 4 3 7 7 C 1.38031 * 120.34981 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.08504 * 179.78172 * 7 6 5 9 9 H 1.08992 * 109.47284 * 339.72774 * 8 7 6 10 10 N 1.46906 * 109.46922 * 219.72385 * 8 7 6 11 11 C 1.50703 * 109.47064 * 99.72558 * 8 7 6 12 12 H 1.08004 * 119.99786 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00098 * 179.97438 * 11 8 7 14 14 N 1.31508 * 120.00316 * 179.97438 * 13 11 8 15 15 Si 1.86804 * 119.99909 * 0.02562 * 13 11 8 16 16 H 1.48503 * 109.46782 * 89.99440 * 15 13 11 17 17 H 1.48494 * 109.47234 * 209.99641 * 15 13 11 18 18 H 1.48497 * 109.47042 * 329.99800 * 15 13 11 19 19 C 1.38264 * 119.82548 * 359.50555 * 7 6 5 20 20 C 1.38010 * 119.87057 * 0.32487 * 19 7 6 21 21 C 1.37826 * 121.66638 * 343.09248 * 5 4 3 22 22 C 1.46639 * 111.00219 * 122.98588 * 2 1 3 23 23 H 1.09004 * 109.47179 * 300.95859 * 1 2 3 24 24 H 1.08992 * 109.47547 * 60.96372 * 1 2 3 25 25 H 1.08999 * 109.47088 * 180.96516 * 1 2 3 26 26 H 1.08992 * 109.63385 * 171.86296 * 3 2 1 27 27 H 1.09002 * 109.62561 * 292.25840 * 3 2 1 28 28 H 1.08994 * 109.39022 * 170.54275 * 4 3 2 29 29 H 1.09001 * 109.39363 * 290.34583 * 4 3 2 30 30 H 1.08005 * 119.82563 * 359.75293 * 6 5 4 31 31 H 1.00902 * 110.99567 * 299.99689 * 10 8 7 32 32 H 1.00901 * 111.00013 * 63.95541 * 10 8 7 33 33 H 0.96996 * 120.00419 * 180.02562 * 14 13 11 34 34 H 1.08000 * 120.06171 * 180.34268 * 19 7 6 35 35 H 1.07998 * 119.81022 * 179.97438 * 20 19 7 36 36 H 1.08998 * 109.29637 * 168.78473 * 22 2 1 37 37 H 1.09001 * 109.12866 * 49.31516 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3739 0.0000 4 6 1.3398 2.1458 1.1450 5 6 1.4525 1.3600 2.4261 6 6 1.2386 2.0193 3.6274 7 6 1.3326 1.3371 4.8237 8 6 1.1039 2.0605 6.1258 9 1 1.2351 3.1318 5.9742 10 7 2.0695 1.5856 7.1259 11 6 -0.2967 1.7897 6.6116 12 1 -0.9552 1.1567 6.0353 13 6 -0.7371 2.3492 7.7923 14 7 -1.9595 2.1133 8.2160 15 14 0.4021 3.4434 8.7894 16 1 0.2433 4.8533 8.3509 17 1 0.0603 3.3316 10.2301 18 1 1.8085 3.0153 8.5797 19 6 1.6315 -0.0128 4.8239 20 6 1.8410 -0.6706 3.6288 21 6 1.7524 0.0148 2.4259 22 6 1.9945 -0.7453 1.1483 23 1 -0.3634 0.5287 0.8813 24 1 -0.3634 0.4987 -0.8984 25 1 -0.3633 -1.0275 0.0173 26 1 3.0764 1.3516 0.1453 27 1 1.7645 1.8551 -0.9502 28 1 1.8379 3.1077 1.2654 29 1 0.2872 2.3098 0.9141 30 1 1.0016 3.0730 3.6271 31 1 1.9679 0.5943 7.2843 32 1 3.0139 1.8134 6.8534 33 1 -2.2695 2.5072 9.0464 34 1 1.7005 -0.5515 5.7574 35 1 2.0748 -1.7250 3.6302 36 1 3.0657 -0.8993 1.0181 37 1 1.4958 -1.7129 1.2047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259877539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:07 Heat of formation + Delta-G solvation = 11.969776 kcal Electronic energy + Delta-G solvation = -17883.701925 eV Core-core repulsion = 15238.541105 eV Total energy + Delta-G solvation = -2645.160820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.39979 -38.81392 -36.16739 -33.97786 -33.66966 -31.44600 -30.22437 -28.61958 -27.78917 -25.07090 -24.29410 -23.14570 -22.15877 -19.80858 -18.94815 -17.44873 -16.99433 -16.64298 -16.32100 -16.14995 -15.74110 -15.46600 -15.09011 -14.91810 -14.38441 -14.02733 -13.73154 -13.59677 -13.22033 -13.07222 -12.84515 -12.76539 -12.60391 -12.47721 -12.19602 -11.95666 -11.68787 -11.54358 -11.37104 -10.76949 -9.61496 -9.35482 -9.30987 -8.90452 -8.26976 -6.40685 0.47553 0.50127 1.48670 1.55579 1.92187 2.58603 2.82745 3.06617 3.11810 3.75174 3.87687 3.99336 4.06462 4.18653 4.21565 4.29017 4.33109 4.52820 4.57829 4.63272 4.67527 4.78319 4.86282 4.89991 4.94827 5.06229 5.07647 5.17729 5.26960 5.50970 5.51224 5.64327 5.85056 6.02502 6.07639 6.09629 6.17752 6.47244 6.74160 7.00725 7.37489 8.86544 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038115 B = 0.005749 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.451181 B = 4869.475449 C = 4948.247136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.531 5.531 3 C 0.056 3.944 4 C -0.114 4.114 5 C -0.084 4.084 6 C -0.137 4.137 7 C -0.091 4.091 8 C 0.228 3.772 9 H 0.038 0.962 10 N -0.834 5.834 11 C -0.516 4.516 12 H 0.019 0.981 13 C 0.025 3.975 14 N -0.952 5.952 15 Si 0.932 3.068 16 H -0.301 1.301 17 H -0.313 1.313 18 H -0.156 1.156 19 C -0.132 4.132 20 C -0.115 4.115 21 C -0.134 4.134 22 C 0.098 3.902 23 H 0.016 0.984 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.335 0.665 32 H 0.330 0.670 33 H 0.263 0.737 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.100 0.900 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.729 -3.488 -16.168 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.252 5.252 3 C -0.072 4.072 4 C -0.152 4.152 5 C -0.084 4.084 6 C -0.156 4.156 7 C -0.093 4.093 8 C 0.118 3.882 9 H 0.056 0.944 10 N -0.364 5.364 11 C -0.554 4.554 12 H 0.037 0.963 13 C -0.174 4.174 14 N -0.592 5.592 15 Si 0.757 3.243 16 H -0.229 1.229 17 H -0.242 1.242 18 H -0.076 1.076 19 C -0.150 4.150 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.031 4.031 23 H 0.035 0.965 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.160 0.840 36 H 0.118 0.882 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.424 -3.232 -16.011 19.933 hybrid contribution -0.646 0.399 1.148 1.376 sum 10.779 -2.833 -14.863 18.577 Atomic orbital electron populations 1.22484 0.87473 1.02395 1.00895 1.62780 1.08439 1.14465 1.39534 1.22285 0.99837 0.87476 0.97625 1.21122 1.02294 0.99392 0.92384 1.19738 0.99773 0.93935 0.94976 1.21102 1.02214 1.00067 0.92199 1.20987 0.96149 0.95336 0.96871 1.18209 0.90843 0.94132 0.85026 0.94424 1.59733 1.07158 1.21412 1.48123 1.20941 0.96587 1.30906 1.06991 0.96299 1.25947 0.96065 0.97106 0.98264 1.70104 1.19608 1.46430 1.23055 0.86269 0.86987 0.76185 0.74862 1.22897 1.24161 1.07621 1.20985 1.01411 0.93950 0.98686 1.21252 1.00144 1.00447 0.91448 1.20503 1.02114 0.93896 0.97073 1.21155 1.01868 0.96214 0.83823 0.96510 0.89948 0.91067 0.89894 0.88223 0.89460 0.90750 0.87053 0.85058 0.85722 0.92880 0.86563 0.84030 0.88225 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.84 127.69 1.13 1.46 16 2 N -0.53 -10.99 5.28 -927.43 -4.90 -15.89 16 3 C 0.06 1.05 6.06 86.22 0.52 1.57 16 4 C -0.11 -2.66 5.16 29.82 0.15 -2.51 16 5 C -0.08 -2.57 5.07 -19.85 -0.10 -2.67 16 6 C -0.14 -5.08 9.28 22.33 0.21 -4.87 16 7 C -0.09 -3.69 4.88 -19.91 -0.10 -3.79 16 8 C 0.23 10.41 2.35 43.42 0.10 10.51 16 9 H 0.04 1.76 7.43 -2.39 -0.02 1.74 16 10 N -0.83 -32.83 5.66 -174.95 -0.99 -33.82 16 11 C -0.52 -29.87 9.29 25.60 0.24 -29.63 16 12 H 0.02 1.24 7.98 -2.91 -0.02 1.21 16 13 C 0.02 1.46 5.47 84.66 0.46 1.92 16 14 N -0.95 -61.54 13.96 21.45 0.30 -61.24 16 15 Si 0.93 45.29 26.94 68.60 1.85 47.14 16 16 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 17 H -0.31 -15.65 7.11 99.48 0.71 -14.95 16 18 H -0.16 -6.64 5.17 99.48 0.51 -6.13 16 19 C -0.13 -4.77 9.29 22.22 0.21 -4.56 16 20 C -0.11 -3.43 9.65 22.33 0.22 -3.22 16 21 C -0.13 -3.78 5.33 -19.87 -0.11 -3.89 16 22 C 0.10 2.09 5.54 85.58 0.47 2.57 16 23 H 0.02 0.43 5.51 -2.38 -0.01 0.41 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.40 8.04 -2.39 -0.02 1.38 16 26 H 0.08 1.47 8.05 -2.39 -0.02 1.45 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.79 6.82 -2.39 -0.02 1.78 16 30 H 0.11 4.07 8.04 -2.91 -0.02 4.05 16 31 H 0.34 12.86 7.35 -89.69 -0.66 12.20 16 32 H 0.33 10.89 9.06 -89.69 -0.81 10.08 16 33 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 34 H 0.12 4.12 6.68 -2.91 -0.02 4.10 16 35 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 1.79 7.97 -2.39 -0.02 1.78 16 Total: -1.00 -69.75 289.29 -0.92 -70.67 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.59 Total: 30.25 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 3.41 Total: -37.11 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -5.59 Total: -110.95 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.85 Total: 47.14 kcal Total: -69.75 -0.92 -70.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.637 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds