Wall clock time and date at job start Mon Mar 30 2020 04:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47151 * 110.99699 * 2 1 4 4 C 1.52894 * 108.51314 * 52.19301 * 3 2 1 5 5 C 1.50717 * 110.02244 * 50.19108 * 4 3 2 6 6 C 1.38676 * 118.49353 * 162.86364 * 5 4 3 7 7 C 1.38034 * 120.34600 * 179.84132 * 6 5 4 8 8 C 1.50701 * 120.08315 * 180.28129 * 7 6 5 9 9 H 1.08998 * 109.47702 * 20.00236 * 8 7 6 10 10 N 1.46904 * 109.47336 * 140.00479 * 8 7 6 11 11 C 1.50708 * 109.46936 * 259.99968 * 8 7 6 12 12 H 1.07994 * 119.99784 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99980 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99676 * 359.97438 * 13 11 8 15 15 Si 1.86792 * 120.00016 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47174 * 59.99817 * 15 13 11 17 17 H 1.48498 * 109.47202 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47117 * 299.99775 * 15 13 11 19 19 C 1.38255 * 119.82962 * 0.30250 * 7 6 5 20 20 C 1.38013 * 119.86961 * 0.09847 * 19 7 6 21 21 C 1.37835 * 121.65569 * 343.48495 * 5 4 3 22 22 C 1.46634 * 110.99921 * 123.00413 * 2 1 3 23 23 H 1.09003 * 109.47431 * 300.94407 * 1 2 3 24 24 H 1.08996 * 109.47222 * 60.95227 * 1 2 3 25 25 H 1.09004 * 109.47045 * 180.94615 * 1 2 3 26 26 H 1.09007 * 109.63410 * 171.90363 * 3 2 1 27 27 H 1.09004 * 109.63283 * 292.28831 * 3 2 1 28 28 H 1.09000 * 109.39562 * 170.57469 * 4 3 2 29 29 H 1.08998 * 109.39443 * 290.38268 * 4 3 2 30 30 H 1.08002 * 119.82849 * 0.12374 * 6 5 4 31 31 H 1.00906 * 110.99346 * 296.04407 * 10 8 7 32 32 H 1.00893 * 111.00173 * 59.99378 * 10 8 7 33 33 H 0.97000 * 120.00029 * 179.97438 * 14 13 11 34 34 H 1.08006 * 120.06254 * 180.12240 * 19 7 6 35 35 H 1.08001 * 119.81141 * 179.97438 * 20 19 7 36 36 H 1.09001 * 109.26699 * 168.83557 * 22 2 1 37 37 H 1.09003 * 109.24446 * 49.34046 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9963 1.3738 0.0000 4 6 1.3405 2.1455 1.1455 5 6 1.4487 1.3586 2.4264 6 6 1.2475 2.0203 3.6283 7 6 1.3343 1.3362 4.8241 8 6 1.1083 2.0599 6.1265 9 1 0.5568 2.9812 5.9394 10 7 0.3356 1.2026 7.0354 11 6 2.4377 2.3890 6.7555 12 1 3.3544 2.1025 6.2617 13 6 2.4836 3.0551 7.9618 14 7 1.3672 3.4036 8.5633 15 14 4.1313 3.4637 8.7411 16 1 4.9118 4.3311 7.8225 17 1 3.9087 4.1767 10.0245 18 1 4.8834 2.2088 8.9954 19 6 1.6295 -0.0144 4.8238 20 6 1.8381 -0.6722 3.6285 21 6 1.7525 0.0142 2.4259 22 6 1.9945 -0.7457 1.1480 23 1 -0.3634 0.5284 0.8814 24 1 -0.3633 0.4989 -0.8984 25 1 -0.3633 -1.0276 0.0170 26 1 3.0765 1.3515 0.1446 27 1 1.7640 1.8552 -0.9500 28 1 1.8383 3.1077 1.2654 29 1 0.2876 2.3090 0.9157 30 1 1.0173 3.0755 3.6287 31 1 -0.5852 1.0205 6.6650 32 1 0.8260 0.3415 7.2246 33 1 1.3994 3.8719 9.4122 34 1 1.6964 -0.5539 5.7571 35 1 2.0690 -1.7272 3.6294 36 1 3.0658 -0.8986 1.0177 37 1 1.4972 -1.7140 1.2056 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259877545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:09 Heat of formation + Delta-G solvation = 28.462654 kcal Electronic energy + Delta-G solvation = -17822.618936 eV Core-core repulsion = 15178.173301 eV Total energy + Delta-G solvation = -2644.445635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15757 -37.39500 -34.30508 -32.47228 -31.68886 -29.81057 -28.96762 -27.21409 -25.82505 -23.82516 -22.91289 -21.75707 -20.81299 -18.53715 -16.43634 -16.14410 -15.61486 -15.11449 -15.09083 -14.52782 -14.21727 -14.02138 -13.75544 -13.38784 -12.65767 -12.52284 -12.35883 -12.03609 -11.98304 -11.66148 -11.51918 -11.24441 -11.09311 -11.00218 -10.79698 -10.59390 -10.25474 -9.80707 -9.23833 -8.44217 -8.35448 -8.19927 -7.81202 -7.07714 -5.88812 -4.03959 1.89326 1.95047 3.34225 3.38868 3.41664 4.00849 4.26755 4.50490 4.87682 5.02126 5.07256 5.15812 5.30944 5.35967 5.38833 5.57278 5.60016 5.69949 5.79257 5.79836 5.88735 5.90498 6.00334 6.10263 6.21785 6.32266 6.53650 6.64327 6.82954 6.96000 7.07273 7.10880 7.15508 7.58503 7.60955 7.89222 8.17700 8.61666 8.98816 9.13373 9.64626 11.15453 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036830 B = 0.005550 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.074330 B = 5043.483064 C = 5178.547646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.533 5.533 3 C 0.052 3.948 4 C -0.115 4.115 5 C -0.082 4.082 6 C -0.120 4.120 7 C -0.067 4.067 8 C 0.253 3.747 9 H 0.045 0.955 10 N -0.809 5.809 11 C -0.531 4.531 12 H 0.052 0.948 13 C 0.084 3.916 14 N -0.847 5.847 15 Si 0.885 3.115 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.144 4.144 22 C 0.097 3.903 23 H 0.039 0.961 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.297 0.703 32 H 0.317 0.683 33 H 0.256 0.744 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 -6.067 -14.639 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.254 5.254 3 C -0.076 4.076 4 C -0.153 4.153 5 C -0.083 4.083 6 C -0.139 4.139 7 C -0.070 4.070 8 C 0.144 3.856 9 H 0.063 0.937 10 N -0.335 5.335 11 C -0.569 4.569 12 H 0.070 0.930 13 C -0.123 4.123 14 N -0.482 5.482 15 Si 0.713 3.287 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.140 4.140 20 C -0.135 4.135 21 C -0.145 4.145 22 C -0.031 4.031 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.066 0.934 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.102 -5.610 -14.380 15.475 hybrid contribution 0.689 -0.014 0.600 0.914 sum -0.413 -5.624 -13.781 14.890 Atomic orbital electron populations 1.22443 0.87770 1.01924 1.01052 1.62719 1.08266 1.14064 1.40328 1.22202 0.99846 0.88060 0.97462 1.21053 1.01680 0.99201 0.93358 1.19396 1.01139 0.93171 0.94575 1.21011 1.01905 0.99561 0.91440 1.21738 0.92770 0.94026 0.98464 1.18202 0.94411 0.90913 0.82121 0.93736 1.59218 1.03679 1.20174 1.50380 1.20779 0.90579 1.39349 1.06239 0.92967 1.24949 0.95712 0.94870 0.96780 1.70094 1.25649 1.36774 1.15672 0.86804 0.84761 0.78538 0.78613 1.20381 1.21288 1.20329 1.20930 1.00749 0.95004 0.97279 1.20915 1.01389 0.99013 0.92219 1.20015 1.04602 0.94161 0.95763 1.21020 1.00627 0.96075 0.85363 0.94274 0.91690 0.91745 0.90546 0.90406 0.90396 0.90855 0.86695 0.89252 0.87022 0.93370 0.86546 0.87118 0.90043 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.84 60.06 0.53 0.72 16 2 N -0.53 -6.50 5.28 -244.49 -1.29 -7.79 16 3 C 0.05 0.61 6.06 -3.74 -0.02 0.59 16 4 C -0.11 -1.51 5.16 -27.93 -0.14 -1.66 16 5 C -0.08 -1.36 5.06 -104.60 -0.53 -1.89 16 6 C -0.12 -2.33 9.28 -39.49 -0.37 -2.70 16 7 C -0.07 -1.43 4.88 -104.69 -0.51 -1.94 16 8 C 0.25 6.26 2.85 -70.01 -0.20 6.06 16 9 H 0.04 1.21 8.00 -51.93 -0.42 0.80 16 10 N -0.81 -18.98 8.36 -6.64 -0.06 -19.03 16 11 C -0.53 -14.62 8.70 -34.44 -0.30 -14.92 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 13 C 0.08 2.34 5.39 -17.82 -0.10 2.24 16 14 N -0.85 -24.69 12.77 55.43 0.71 -23.98 16 15 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.12 -2.32 9.29 -39.66 -0.37 -2.69 16 20 C -0.12 -1.93 9.65 -39.48 -0.38 -2.31 16 21 C -0.14 -2.26 5.33 -104.62 -0.56 -2.82 16 22 C 0.10 1.25 5.54 -5.16 -0.03 1.22 16 23 H 0.04 0.50 5.50 -51.93 -0.29 0.21 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 26 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.92 6.82 -51.93 -0.35 0.56 16 30 H 0.12 2.18 8.03 -52.49 -0.42 1.76 16 31 H 0.30 6.28 9.06 -39.29 -0.36 5.92 16 32 H 0.32 7.08 7.35 -39.30 -0.29 6.79 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.12 2.18 6.68 -52.48 -0.35 1.83 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 LS Contribution 295.50 15.07 4.45 4.45 Total: -1.00 -29.69 295.50 -9.56 -39.24 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.38 Total: 10.78 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -2.97 Total: -20.09 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.64 Total: -50.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.69 -9.56 -39.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.705 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds