Wall clock time and date at job start Mon Mar 30 2020 04:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47151 * 110.99699 * 2 1 4 4 C 1.52894 * 108.51314 * 52.19301 * 3 2 1 5 5 C 1.50717 * 110.02244 * 50.19108 * 4 3 2 6 6 C 1.38676 * 118.49353 * 162.86364 * 5 4 3 7 7 C 1.38034 * 120.34600 * 179.84132 * 6 5 4 8 8 C 1.50701 * 120.08315 * 180.28129 * 7 6 5 9 9 H 1.08998 * 109.47702 * 20.00236 * 8 7 6 10 10 N 1.46904 * 109.47336 * 140.00479 * 8 7 6 11 11 C 1.50708 * 109.46936 * 259.99968 * 8 7 6 12 12 H 1.07994 * 119.99784 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99980 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99676 * 359.97438 * 13 11 8 15 15 Si 1.86792 * 120.00016 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47174 * 59.99817 * 15 13 11 17 17 H 1.48498 * 109.47202 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47117 * 299.99775 * 15 13 11 19 19 C 1.38255 * 119.82962 * 0.30250 * 7 6 5 20 20 C 1.38013 * 119.86961 * 0.09847 * 19 7 6 21 21 C 1.37835 * 121.65569 * 343.48495 * 5 4 3 22 22 C 1.46634 * 110.99921 * 123.00413 * 2 1 3 23 23 H 1.09003 * 109.47431 * 300.94407 * 1 2 3 24 24 H 1.08996 * 109.47222 * 60.95227 * 1 2 3 25 25 H 1.09004 * 109.47045 * 180.94615 * 1 2 3 26 26 H 1.09007 * 109.63410 * 171.90363 * 3 2 1 27 27 H 1.09004 * 109.63283 * 292.28831 * 3 2 1 28 28 H 1.09000 * 109.39562 * 170.57469 * 4 3 2 29 29 H 1.08998 * 109.39443 * 290.38268 * 4 3 2 30 30 H 1.08002 * 119.82849 * 0.12374 * 6 5 4 31 31 H 1.00906 * 110.99346 * 296.04407 * 10 8 7 32 32 H 1.00893 * 111.00173 * 59.99378 * 10 8 7 33 33 H 0.97000 * 120.00029 * 179.97438 * 14 13 11 34 34 H 1.08006 * 120.06254 * 180.12240 * 19 7 6 35 35 H 1.08001 * 119.81141 * 179.97438 * 20 19 7 36 36 H 1.09001 * 109.26699 * 168.83557 * 22 2 1 37 37 H 1.09003 * 109.24446 * 49.34046 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9963 1.3738 0.0000 4 6 1.3405 2.1455 1.1455 5 6 1.4487 1.3586 2.4264 6 6 1.2475 2.0203 3.6283 7 6 1.3343 1.3362 4.8241 8 6 1.1083 2.0599 6.1265 9 1 0.5568 2.9812 5.9394 10 7 0.3356 1.2026 7.0354 11 6 2.4377 2.3890 6.7555 12 1 3.3544 2.1025 6.2617 13 6 2.4836 3.0551 7.9618 14 7 1.3672 3.4036 8.5633 15 14 4.1313 3.4637 8.7411 16 1 4.9118 4.3311 7.8225 17 1 3.9087 4.1767 10.0245 18 1 4.8834 2.2088 8.9954 19 6 1.6295 -0.0144 4.8238 20 6 1.8381 -0.6722 3.6285 21 6 1.7525 0.0142 2.4259 22 6 1.9945 -0.7457 1.1480 23 1 -0.3634 0.5284 0.8814 24 1 -0.3633 0.4989 -0.8984 25 1 -0.3633 -1.0276 0.0170 26 1 3.0765 1.3515 0.1446 27 1 1.7640 1.8552 -0.9500 28 1 1.8383 3.1077 1.2654 29 1 0.2876 2.3090 0.9157 30 1 1.0173 3.0755 3.6287 31 1 -0.5852 1.0205 6.6650 32 1 0.8260 0.3415 7.2246 33 1 1.3994 3.8719 9.4122 34 1 1.6964 -0.5539 5.7571 35 1 2.0690 -1.7272 3.6294 36 1 3.0658 -0.8986 1.0177 37 1 1.4972 -1.7140 1.2056 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259877545.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:09 Heat of formation + Delta-G solvation = 8.076490 kcal Electronic energy + Delta-G solvation = -17823.502947 eV Core-core repulsion = 15178.173301 eV Total energy + Delta-G solvation = -2645.329646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.37415 -38.72483 -36.04007 -33.66672 -33.65527 -31.27007 -30.19526 -28.48444 -27.62345 -25.05425 -24.37101 -23.11369 -22.26913 -19.84359 -18.49117 -17.41154 -16.90372 -16.66203 -16.23975 -16.14328 -15.72689 -15.39907 -15.11326 -14.68516 -14.34950 -13.93362 -13.78894 -13.37316 -13.15248 -12.94289 -12.81553 -12.76940 -12.49211 -12.42474 -12.39587 -12.16552 -11.66526 -11.54792 -11.22343 -10.58725 -9.60079 -9.39152 -9.27459 -8.88915 -8.01746 -6.24199 0.49690 0.52830 1.40673 1.41477 1.49362 2.42818 2.87417 3.08209 3.21466 3.76833 3.90033 3.99722 4.08637 4.23085 4.31355 4.36119 4.39909 4.56346 4.61180 4.64607 4.71606 4.82617 4.87828 4.93851 5.02617 5.08337 5.12257 5.23027 5.35212 5.53440 5.65976 5.71952 5.92122 6.02850 6.09925 6.10816 6.22685 6.60946 7.05334 7.21155 7.48307 9.01375 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036830 B = 0.005550 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.074330 B = 5043.483064 C = 5178.547646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.532 5.532 3 C 0.055 3.945 4 C -0.113 4.113 5 C -0.082 4.082 6 C -0.140 4.140 7 C -0.094 4.094 8 C 0.259 3.741 9 H 0.005 0.995 10 N -0.818 5.818 11 C -0.544 4.544 12 H 0.042 0.958 13 C 0.035 3.965 14 N -0.880 5.880 15 Si 0.949 3.051 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.134 4.134 20 C -0.112 4.112 21 C -0.137 4.137 22 C 0.099 3.901 23 H 0.020 0.980 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.310 0.690 32 H 0.323 0.677 33 H 0.256 0.744 34 H 0.113 0.887 35 H 0.143 0.857 36 H 0.093 0.907 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -7.437 -16.743 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.252 5.252 3 C -0.073 4.073 4 C -0.151 4.151 5 C -0.082 4.082 6 C -0.159 4.159 7 C -0.096 4.096 8 C 0.149 3.851 9 H 0.023 0.977 10 N -0.345 5.345 11 C -0.583 4.583 12 H 0.060 0.940 13 C -0.169 4.169 14 N -0.516 5.516 15 Si 0.775 3.225 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.153 4.153 20 C -0.130 4.130 21 C -0.138 4.138 22 C -0.029 4.029 23 H 0.039 0.961 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.121 0.879 32 H 0.136 0.864 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.161 0.839 36 H 0.111 0.889 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.194 -6.986 -16.502 17.920 hybrid contribution 0.364 0.382 1.148 1.264 sum 0.170 -6.603 -15.353 16.714 Atomic orbital electron populations 1.22496 0.87107 1.02563 1.01022 1.62767 1.08814 1.14151 1.39499 1.22263 0.99618 0.87731 0.97649 1.21115 1.02535 0.99100 0.92371 1.19727 0.99718 0.93948 0.94813 1.21057 1.03178 0.99339 0.92321 1.21354 0.95945 0.95082 0.97244 1.17825 0.92820 0.90207 0.84211 0.97672 1.59023 1.04362 1.20334 1.50769 1.21060 0.91437 1.39253 1.06506 0.93984 1.25694 0.99072 0.94774 0.97322 1.70221 1.27666 1.37701 1.15992 0.85786 0.80612 0.78395 0.77738 1.19956 1.20741 1.19761 1.20955 1.01652 0.94168 0.98487 1.21251 0.99918 1.00516 0.91351 1.20485 1.02324 0.93902 0.97108 1.21137 1.01656 0.96366 0.83789 0.96119 0.90001 0.90788 0.90570 0.88042 0.90204 0.90029 0.87797 0.87945 0.86364 0.93461 0.86855 0.83897 0.88902 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.84 127.69 1.13 1.44 16 2 N -0.53 -10.99 5.28 -927.44 -4.89 -15.88 16 3 C 0.06 1.11 6.06 86.22 0.52 1.63 16 4 C -0.11 -2.78 5.16 29.82 0.15 -2.62 16 5 C -0.08 -2.62 5.06 -19.85 -0.10 -2.72 16 6 C -0.14 -5.57 9.28 22.33 0.21 -5.36 16 7 C -0.09 -4.10 4.88 -19.91 -0.10 -4.20 16 8 C 0.26 13.44 2.85 43.42 0.12 13.56 16 9 H 0.01 0.31 8.00 -2.39 -0.02 0.29 16 10 N -0.82 -39.76 8.36 -174.94 -1.46 -41.22 16 11 C -0.54 -30.93 8.70 25.60 0.22 -30.70 16 12 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 13 C 0.04 2.00 5.39 84.66 0.46 2.45 16 14 N -0.88 -52.63 12.77 21.45 0.27 -52.35 16 15 Si 0.95 44.64 29.54 68.60 2.03 46.66 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 C -0.13 -5.12 9.29 22.22 0.21 -4.92 16 20 C -0.11 -3.47 9.65 22.33 0.22 -3.26 16 21 C -0.14 -3.98 5.33 -19.87 -0.11 -4.08 16 22 C 0.10 2.17 5.54 85.58 0.47 2.64 16 23 H 0.02 0.47 5.50 -2.39 -0.01 0.46 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.27 8.04 -2.39 -0.02 1.25 16 26 H 0.08 1.56 8.05 -2.38 -0.02 1.54 16 27 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 1.89 6.82 -2.39 -0.02 1.88 16 30 H 0.10 4.20 8.03 -2.91 -0.02 4.18 16 31 H 0.31 13.56 9.06 -89.69 -0.81 12.74 16 32 H 0.32 14.85 7.35 -89.70 -0.66 14.19 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.11 4.29 6.68 -2.91 -0.02 4.27 16 35 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.10 1.83 7.98 -2.39 -0.02 1.81 16 Total: -1.00 -64.84 295.50 -1.04 -65.88 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.39 Total: 33.05 kcal Atomic # 6 Polarization: -39.54 SS G_CDS: 3.41 Total: -36.13 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -6.08 Total: -109.46 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.84 -1.04 -65.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259877545.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.954 kcal (2) G-P(sol) polarization free energy of solvation -64.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds