Wall clock time and date at job start Mon Mar 30 2020 04:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.68460 * 2 1 4 4 C 1.53325 * 109.69084 * 239.42846 * 2 1 3 5 5 C 1.52723 * 108.42943 * 170.38955 * 4 2 1 6 6 C 1.50729 * 110.57379 * 51.25889 * 5 4 2 7 7 N 1.32699 * 117.56141 * 162.34486 * 6 5 4 8 8 C 1.31514 * 122.40204 * 179.75930 * 7 6 5 9 9 C 1.38237 * 120.61049 * 359.97438 * 8 7 6 10 10 C 1.38411 * 118.84170 * 0.11755 * 9 8 7 11 11 C 1.37604 * 122.34280 * 342.28490 * 6 5 4 12 12 C 1.50496 * 122.84808 * 0.38471 * 11 6 5 13 13 C 1.50699 * 109.22954 * 102.89720 * 12 11 6 14 14 H 1.08001 * 119.99507 * 152.35804 * 13 12 11 15 15 C 1.37870 * 120.00122 * 332.36301 * 13 12 11 16 16 N 1.31516 * 120.00066 * 350.87219 * 15 13 12 17 17 Si 1.86808 * 119.99988 * 170.87165 * 15 13 12 18 18 H 1.48492 * 109.47222 * 90.00075 * 17 15 13 19 19 H 1.48502 * 109.46811 * 210.00358 * 17 15 13 20 20 H 1.48501 * 109.47021 * 329.99687 * 17 15 13 21 21 C 1.53001 * 109.25728 * 222.36107 * 12 11 6 22 22 N 1.46899 * 109.47063 * 56.89372 * 21 12 11 23 23 H 1.09002 * 109.47318 * 299.46390 * 1 2 3 24 24 H 1.08994 * 109.47209 * 59.46684 * 1 2 3 25 25 H 1.08998 * 109.46899 * 179.46978 * 1 2 3 26 26 H 1.09008 * 109.67006 * 290.12045 * 4 2 1 27 27 H 1.08994 * 109.67475 * 50.61431 * 4 2 1 28 28 H 1.09005 * 109.25657 * 171.54174 * 5 4 2 29 29 H 1.09000 * 109.25885 * 290.97609 * 5 4 2 30 30 H 1.07995 * 119.69404 * 179.97438 * 8 7 6 31 31 H 1.08000 * 120.57830 * 180.08995 * 9 8 7 32 32 H 1.07999 * 120.56699 * 179.97438 * 10 9 8 33 33 H 0.96998 * 119.99874 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.47359 * 176.88903 * 21 12 11 35 35 H 1.09000 * 109.47459 * 296.89064 * 21 12 11 36 36 H 1.00901 * 111.00121 * 62.55346 * 22 21 12 37 37 H 1.00895 * 111.00255 * 186.50910 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0466 -0.7342 -1.2429 5 6 3.5543 -0.5123 -1.3429 6 6 4.2271 -0.8498 -0.0370 7 7 5.5378 -1.0562 -0.0569 8 6 6.2212 -1.3515 1.0272 9 6 5.5877 -1.4594 2.2511 10 6 4.2205 -1.2536 2.3157 11 6 3.5315 -0.9452 1.1464 12 6 2.0447 -0.7307 1.2390 13 6 1.3564 -2.0667 1.3498 14 1 0.4048 -2.1435 1.8547 15 6 1.9416 -3.1908 0.8069 16 7 3.0040 -3.0742 0.0405 17 14 1.2253 -4.8797 1.1598 18 1 0.2110 -5.2127 0.1278 19 1 2.3105 -5.8930 1.1327 20 1 0.5853 -4.8757 2.4999 21 6 1.7317 0.1030 2.4831 22 7 2.4703 1.3713 2.4212 23 1 -0.3634 0.5055 0.8948 24 1 -0.3633 0.5221 -0.8851 25 1 -0.3633 -1.0276 -0.0095 26 1 1.8378 -1.8003 -1.1526 27 1 1.5571 -0.3386 -2.1328 28 1 3.9597 -1.1473 -2.1307 29 1 3.7486 0.5318 -1.5881 30 1 7.2873 -1.5111 0.9607 31 1 6.1497 -1.7005 3.1413 32 1 3.6973 -1.3314 3.2573 33 1 3.4158 -3.8651 -0.3412 34 1 0.6618 0.3074 2.5238 35 1 2.0305 -0.4483 3.3746 36 1 2.1807 1.9200 1.6254 37 1 2.3648 1.8935 3.2780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259899982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:11 Heat of formation + Delta-G solvation = 34.575307 kcal Electronic energy + Delta-G solvation = -19432.388642 eV Core-core repulsion = 16788.208072 eV Total energy + Delta-G solvation = -2644.180571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.67634 -36.83710 -33.70101 -32.52024 -31.01541 -30.42450 -28.86997 -26.44491 -24.24075 -23.66868 -22.37249 -21.02780 -19.74447 -18.33809 -16.23960 -15.76359 -15.14878 -14.78628 -14.51294 -14.25456 -13.66767 -13.20059 -12.87812 -12.57041 -12.20922 -12.07976 -11.77700 -11.76112 -11.30649 -11.06896 -10.92533 -10.82480 -10.67249 -10.41352 -10.05866 -9.91759 -9.31088 -9.09382 -8.98575 -8.49940 -8.09625 -8.03639 -7.81619 -7.38623 -5.80867 -4.17406 2.66200 2.85950 3.24102 3.33925 3.34753 4.34273 5.11634 5.26194 5.38056 5.56994 5.89807 5.95156 5.99214 6.13719 6.19168 6.31921 6.36411 6.46402 6.49974 6.55430 6.69522 6.72853 6.78824 6.96099 6.98473 7.11386 7.20741 7.24372 7.35317 7.40448 7.61126 7.69346 7.81388 7.91897 8.05197 8.07681 8.22798 8.27274 8.81982 9.44235 9.45734 10.89619 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.014277 C = 0.011469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.897465 B = 1960.710532 C = 2440.823018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 H 0.035 0.965 4 C -0.108 4.108 5 C -0.039 4.039 6 C 0.185 3.815 7 N -0.511 5.511 8 C 0.058 3.942 9 C -0.197 4.197 10 C -0.082 4.082 11 C 0.027 3.973 12 C 0.106 3.894 13 C -0.509 4.509 14 H 0.060 0.940 15 C 0.071 3.929 16 N -0.860 5.860 17 Si 0.886 3.114 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.072 3.928 22 N -0.849 5.849 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.029 0.971 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.262 0.738 34 H 0.017 0.983 35 H 0.062 0.938 36 H 0.332 0.668 37 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.249 5.110 1.604 5.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.094 4.094 3 H 0.053 0.947 4 C -0.145 4.145 5 C -0.077 4.077 6 C 0.048 3.952 7 N -0.222 5.222 8 C -0.100 4.100 9 C -0.218 4.218 10 C -0.108 4.108 11 C 0.024 3.976 12 C 0.105 3.895 13 C -0.548 4.548 14 H 0.079 0.921 15 C -0.132 4.132 16 N -0.497 5.497 17 Si 0.714 3.286 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.058 4.058 22 N -0.378 5.378 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.142 0.858 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.145 0.855 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.019 4.566 0.626 4.609 hybrid contribution -1.562 -0.857 1.249 2.176 sum -1.582 3.709 1.875 4.447 Atomic orbital electron populations 1.21731 0.96704 1.02108 0.98253 1.21212 0.94374 0.96384 0.97407 0.94713 1.21679 0.93094 1.04941 0.94835 1.19957 0.95650 0.98229 0.93908 1.20295 0.87957 0.92975 0.93925 1.67242 1.09516 1.14028 1.31375 1.21866 0.98374 1.00927 0.88797 1.21615 0.95888 1.06087 0.98207 1.21068 0.93116 0.98432 0.98218 1.19747 0.95627 0.90657 0.91577 1.17257 0.89063 0.93577 0.89607 1.20866 1.06026 0.90731 1.37152 0.92147 1.24914 0.94899 0.98827 0.94544 1.70023 1.20516 1.28718 1.30411 0.86686 0.78684 0.84514 0.78730 1.20758 1.21304 1.20045 1.22089 0.93673 0.89664 1.00407 1.58839 1.64254 1.07909 1.06812 0.94656 0.95292 0.91295 0.87141 0.95238 0.91978 0.93666 0.85805 0.87890 0.87512 0.92703 0.96485 0.91945 0.85483 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.63 37.16 0.32 -2.09 16 2 C -0.07 -1.51 1.88 -90.57 -0.17 -1.68 16 3 H 0.03 0.68 6.39 -51.93 -0.33 0.35 16 4 C -0.11 -2.29 4.95 -26.71 -0.13 -2.42 16 5 C -0.04 -0.86 5.66 -28.01 -0.16 -1.02 16 6 C 0.19 4.38 4.82 -82.43 -0.40 3.99 16 7 N -0.51 -12.14 10.19 -9.51 -0.10 -12.24 16 8 C 0.06 1.25 11.19 -17.69 -0.20 1.06 16 9 C -0.20 -4.21 10.12 -39.52 -0.40 -4.61 16 10 C -0.08 -1.87 8.99 -39.17 -0.35 -2.22 16 11 C 0.03 0.61 2.35 -104.60 -0.25 0.37 16 12 C 0.11 2.31 0.20 -157.03 -0.03 2.27 16 13 C -0.51 -12.15 5.92 -34.44 -0.20 -12.35 16 14 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 15 C 0.07 1.76 4.43 -17.82 -0.08 1.68 16 16 N -0.86 -21.97 7.17 55.43 0.40 -21.57 16 17 Si 0.89 20.05 29.55 -169.99 -5.02 15.03 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 C 0.07 1.38 5.06 -3.82 -0.02 1.36 16 22 N -0.85 -14.37 8.95 -10.37 -0.09 -14.46 16 23 H 0.03 0.60 6.63 -51.93 -0.34 0.26 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 26 H 0.11 2.66 4.87 -51.92 -0.25 2.41 16 27 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 31 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.11 2.34 6.50 -52.49 -0.34 2.00 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.02 0.32 6.55 -51.93 -0.34 -0.02 16 35 H 0.06 1.24 6.61 -51.93 -0.34 0.90 16 36 H 0.33 5.40 7.27 -39.29 -0.29 5.11 16 37 H 0.32 4.60 9.08 -39.29 -0.36 4.25 16 LS Contribution 277.01 15.07 4.17 4.17 Total: -1.00 -26.36 277.01 -7.75 -34.11 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.04 Total: 10.63 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.07 Total: -15.67 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.21 Total: -48.27 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.36 -7.75 -34.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.686 kcal (2) G-P(sol) polarization free energy of solvation -26.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds