Wall clock time and date at job start Mon Mar 30 2020 04:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.68460 * 2 1 4 4 C 1.53325 * 109.69084 * 239.42846 * 2 1 3 5 5 C 1.52723 * 108.42943 * 170.38955 * 4 2 1 6 6 C 1.50729 * 110.57379 * 51.25889 * 5 4 2 7 7 N 1.32699 * 117.56141 * 162.34486 * 6 5 4 8 8 C 1.31514 * 122.40204 * 179.75930 * 7 6 5 9 9 C 1.38237 * 120.61049 * 359.97438 * 8 7 6 10 10 C 1.38411 * 118.84170 * 0.11755 * 9 8 7 11 11 C 1.37604 * 122.34280 * 342.28490 * 6 5 4 12 12 C 1.50496 * 122.84808 * 0.38471 * 11 6 5 13 13 C 1.50699 * 109.22954 * 102.89720 * 12 11 6 14 14 H 1.08001 * 119.99507 * 152.35804 * 13 12 11 15 15 C 1.37870 * 120.00122 * 332.36301 * 13 12 11 16 16 N 1.31516 * 120.00066 * 350.87219 * 15 13 12 17 17 Si 1.86808 * 119.99988 * 170.87165 * 15 13 12 18 18 H 1.48492 * 109.47222 * 90.00075 * 17 15 13 19 19 H 1.48502 * 109.46811 * 210.00358 * 17 15 13 20 20 H 1.48501 * 109.47021 * 329.99687 * 17 15 13 21 21 C 1.53001 * 109.25728 * 222.36107 * 12 11 6 22 22 N 1.46899 * 109.47063 * 56.89372 * 21 12 11 23 23 H 1.09002 * 109.47318 * 299.46390 * 1 2 3 24 24 H 1.08994 * 109.47209 * 59.46684 * 1 2 3 25 25 H 1.08998 * 109.46899 * 179.46978 * 1 2 3 26 26 H 1.09008 * 109.67006 * 290.12045 * 4 2 1 27 27 H 1.08994 * 109.67475 * 50.61431 * 4 2 1 28 28 H 1.09005 * 109.25657 * 171.54174 * 5 4 2 29 29 H 1.09000 * 109.25885 * 290.97609 * 5 4 2 30 30 H 1.07995 * 119.69404 * 179.97438 * 8 7 6 31 31 H 1.08000 * 120.57830 * 180.08995 * 9 8 7 32 32 H 1.07999 * 120.56699 * 179.97438 * 10 9 8 33 33 H 0.96998 * 119.99874 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.47359 * 176.88903 * 21 12 11 35 35 H 1.09000 * 109.47459 * 296.89064 * 21 12 11 36 36 H 1.00901 * 111.00121 * 62.55346 * 22 21 12 37 37 H 1.00895 * 111.00255 * 186.50910 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0263 0.0000 4 6 2.0466 -0.7342 -1.2429 5 6 3.5543 -0.5123 -1.3429 6 6 4.2271 -0.8498 -0.0370 7 7 5.5378 -1.0562 -0.0569 8 6 6.2212 -1.3515 1.0272 9 6 5.5877 -1.4594 2.2511 10 6 4.2205 -1.2536 2.3157 11 6 3.5315 -0.9452 1.1464 12 6 2.0447 -0.7307 1.2390 13 6 1.3564 -2.0667 1.3498 14 1 0.4048 -2.1435 1.8547 15 6 1.9416 -3.1908 0.8069 16 7 3.0040 -3.0742 0.0405 17 14 1.2253 -4.8797 1.1598 18 1 0.2110 -5.2127 0.1278 19 1 2.3105 -5.8930 1.1327 20 1 0.5853 -4.8757 2.4999 21 6 1.7317 0.1030 2.4831 22 7 2.4703 1.3713 2.4212 23 1 -0.3634 0.5055 0.8948 24 1 -0.3633 0.5221 -0.8851 25 1 -0.3633 -1.0276 -0.0095 26 1 1.8378 -1.8003 -1.1526 27 1 1.5571 -0.3386 -2.1328 28 1 3.9597 -1.1473 -2.1307 29 1 3.7486 0.5318 -1.5881 30 1 7.2873 -1.5111 0.9607 31 1 6.1497 -1.7005 3.1413 32 1 3.6973 -1.3314 3.2573 33 1 3.4158 -3.8651 -0.3412 34 1 0.6618 0.3074 2.5238 35 1 2.0305 -0.4483 3.3746 36 1 2.1807 1.9200 1.6254 37 1 2.3648 1.8935 3.2780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259899982.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:11 Heat of formation + Delta-G solvation = 18.870416 kcal Electronic energy + Delta-G solvation = -19433.069657 eV Core-core repulsion = 16788.208072 eV Total energy + Delta-G solvation = -2644.861586 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.35717 -38.49048 -35.26882 -34.31048 -32.64682 -32.08866 -30.53736 -28.10380 -25.99706 -25.25409 -24.06379 -22.66304 -21.41117 -20.06020 -17.99082 -17.33768 -16.85452 -16.48389 -16.18321 -15.93285 -15.16846 -14.90358 -14.50824 -14.20479 -13.82352 -13.71236 -13.48282 -13.40889 -13.00103 -12.83342 -12.56499 -12.53270 -12.35553 -12.06398 -11.79360 -11.64910 -10.94323 -10.77228 -10.65798 -10.32486 -9.82930 -9.69997 -9.26217 -9.13916 -7.65378 -6.06083 0.95175 1.12965 1.41660 1.48289 1.51844 2.48409 3.26421 3.54087 3.92351 4.01904 4.30041 4.33293 4.39813 4.57291 4.60098 4.70634 4.73754 4.83008 4.92816 5.00901 5.09808 5.16419 5.20733 5.31492 5.33793 5.45507 5.58349 5.61695 5.71176 5.79589 5.83452 5.94260 6.13521 6.34441 6.39271 6.48491 6.58252 6.85634 6.96634 7.55887 7.72869 8.97640 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.014277 C = 0.011469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.897465 B = 1960.710532 C = 2440.823018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 H 0.045 0.955 4 C -0.105 4.105 5 C -0.037 4.037 6 C 0.164 3.836 7 N -0.532 5.532 8 C 0.046 3.954 9 C -0.198 4.198 10 C -0.100 4.100 11 C 0.019 3.981 12 C 0.099 3.901 13 C -0.506 4.506 14 H 0.055 0.945 15 C 0.038 3.962 16 N -0.870 5.870 17 Si 0.927 3.073 18 H -0.282 1.282 19 H -0.300 1.300 20 H -0.274 1.274 21 C 0.081 3.919 22 N -0.851 5.851 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.153 0.847 31 H 0.133 0.867 32 H 0.109 0.891 33 H 0.248 0.752 34 H 0.024 0.976 35 H 0.052 0.948 36 H 0.338 0.662 37 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 6.182 2.160 6.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 H 0.064 0.936 4 C -0.143 4.143 5 C -0.075 4.075 6 C 0.028 3.972 7 N -0.243 5.243 8 C -0.111 4.111 9 C -0.219 4.219 10 C -0.126 4.126 11 C 0.017 3.983 12 C 0.098 3.902 13 C -0.545 4.545 14 H 0.073 0.927 15 C -0.163 4.163 16 N -0.508 5.508 17 Si 0.756 3.244 18 H -0.208 1.208 19 H -0.227 1.227 20 H -0.199 1.199 21 C -0.049 4.049 22 N -0.382 5.382 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.170 0.830 31 H 0.151 0.849 32 H 0.127 0.873 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.152 0.848 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.312 5.653 1.194 5.786 hybrid contribution -1.447 -1.179 1.107 2.171 sum -1.759 4.474 2.301 5.330 Atomic orbital electron populations 1.21643 0.95308 1.01274 0.99885 1.21167 0.95487 0.96436 0.96042 0.93628 1.21596 0.92979 1.03366 0.96324 1.19957 0.95882 0.98694 0.92977 1.20589 0.88258 0.93667 0.94713 1.67264 1.09883 1.14684 1.32447 1.22395 0.99771 1.00368 0.88601 1.21946 0.95666 1.04962 0.99284 1.21287 0.94004 0.98971 0.98320 1.19892 0.96281 0.90610 0.91557 1.17338 0.88273 0.93192 0.91439 1.21048 1.05622 0.91865 1.35928 0.92706 1.25317 0.95386 1.00618 0.94960 1.70191 1.21349 1.27925 1.31291 0.86046 0.77651 0.82285 0.78449 1.20793 1.22694 1.19903 1.21842 0.94198 0.90262 0.98630 1.58714 1.63902 1.07499 1.08106 0.93472 0.93223 0.93311 0.90051 0.93336 0.93265 0.92251 0.82989 0.84945 0.87343 0.94114 0.95773 0.92999 0.84813 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.28 8.63 71.98 0.62 -3.66 16 2 C -0.07 -2.79 1.88 -10.76 -0.02 -2.81 16 3 H 0.05 1.66 6.39 -2.39 -0.02 1.65 16 4 C -0.10 -4.35 4.95 30.61 0.15 -4.20 16 5 C -0.04 -1.60 5.66 29.77 0.17 -1.43 16 6 C 0.16 7.67 4.82 42.29 0.20 7.87 16 7 N -0.53 -24.90 10.19 -184.00 -1.87 -26.78 16 8 C 0.05 1.92 11.19 84.74 0.95 2.87 16 9 C -0.20 -8.12 10.12 22.31 0.23 -7.89 16 10 C -0.10 -4.42 8.99 22.54 0.20 -4.22 16 11 C 0.02 0.87 2.35 -19.85 -0.05 0.82 16 12 C 0.10 4.17 0.20 -53.81 -0.01 4.16 16 13 C -0.51 -23.83 5.92 25.60 0.15 -23.68 16 14 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 15 C 0.04 1.87 4.43 84.65 0.37 2.24 16 16 N -0.87 -44.77 7.17 21.44 0.15 -44.61 16 17 Si 0.93 41.35 29.55 68.60 2.03 43.37 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 C 0.08 2.97 5.06 86.30 0.44 3.40 16 22 N -0.85 -26.80 8.95 -186.71 -1.67 -28.47 16 23 H 0.05 1.49 6.63 -2.39 -0.02 1.48 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.87 6.95 -2.39 -0.02 1.86 16 26 H 0.08 3.92 4.87 -2.38 -0.01 3.91 16 27 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 28 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.15 5.34 8.06 -2.91 -0.02 5.32 16 31 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.11 4.66 6.50 -2.91 -0.02 4.64 16 33 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 34 H 0.02 0.84 6.55 -2.39 -0.02 0.83 16 35 H 0.05 1.99 6.61 -2.39 -0.02 1.97 16 36 H 0.34 10.06 7.27 -89.69 -0.65 9.41 16 37 H 0.34 8.80 9.08 -89.70 -0.81 7.99 16 Total: -1.00 -54.79 277.01 1.67 -53.12 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.37 Total: 29.89 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 3.41 Total: -26.51 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -3.39 Total: -99.87 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -54.79 1.67 -53.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259899982.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.987 kcal (2) G-P(sol) polarization free energy of solvation -54.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds