Wall clock time and date at job start Mon Mar 30 2020 03:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00091 * 2 1 4 4 H 1.48497 * 109.47424 * 274.70934 * 3 2 1 5 5 H 1.48495 * 109.47408 * 34.71145 * 3 2 1 6 6 H 1.48503 * 109.47206 * 154.70947 * 3 2 1 7 7 C 1.37875 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00531 * 186.38549 * 7 2 1 9 9 C 1.50701 * 119.99883 * 6.37801 * 7 2 1 10 10 H 1.08998 * 109.69999 * 305.81010 * 9 7 2 11 11 N 1.47307 * 109.70150 * 66.41904 * 9 7 2 12 12 C 1.47046 * 111.44679 * 170.83423 * 11 9 7 13 13 C 1.53489 * 109.61311 * 288.61548 * 12 11 9 14 14 C 1.50975 * 107.92105 * 49.26609 * 13 12 11 15 15 C 1.35568 * 122.97335 * 344.05943 * 14 13 12 16 16 C 1.40189 * 107.65632 * 179.88493 * 15 14 13 17 17 C 1.34617 * 107.12739 * 0.06433 * 16 15 14 18 18 N 1.35320 * 128.76785 * 164.03663 * 14 13 12 19 19 C 1.46776 * 127.49745 * 0.10909 * 18 14 13 20 20 C 1.53182 * 108.84358 * 162.54090 * 19 18 14 21 21 C 1.53125 * 109.61640 * 51.02234 * 20 19 18 22 22 C 1.50916 * 127.25749 * 180.02562 * 17 16 15 23 23 H 0.96998 * 119.99762 * 359.97438 * 1 2 3 24 24 H 1.00898 * 111.00326 * 295.08604 * 11 9 7 25 25 H 1.09000 * 109.51228 * 168.54585 * 12 11 9 26 26 H 1.09001 * 109.41779 * 48.63305 * 12 11 9 27 27 H 1.08998 * 109.78360 * 289.64222 * 13 12 11 28 28 H 1.09007 * 109.77946 * 168.88902 * 13 12 11 29 29 H 1.07999 * 126.43921 * 180.09062 * 16 15 14 30 30 H 1.09006 * 109.57813 * 282.34928 * 19 18 14 31 31 H 1.09004 * 109.57231 * 42.73472 * 19 18 14 32 32 H 1.09004 * 109.44728 * 171.06663 * 20 19 18 33 33 H 1.09000 * 109.44981 * 291.00576 * 20 19 18 34 34 H 1.08998 * 109.52338 * 49.92048 * 21 20 19 35 35 H 1.09000 * 109.51883 * 170.09733 * 21 20 19 36 36 H 1.09006 * 109.71468 * 44.48729 * 22 17 16 37 37 H 1.08991 * 109.72042 * 283.83694 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3971 2.1039 -1.3953 5 1 1.5000 2.6219 0.7972 6 1 3.5929 1.4134 0.5981 7 6 2.0045 -1.1940 -0.0005 8 1 3.0795 -1.1971 0.1035 9 6 1.2579 -2.4950 -0.1461 10 1 0.4775 -2.5576 0.6122 11 7 0.6552 -2.5743 -1.4879 12 6 0.1031 -3.9115 -1.7512 13 6 1.2497 -4.9138 -1.9422 14 6 2.2156 -4.7390 -0.7951 15 6 2.2135 -3.6495 0.0117 16 6 3.2311 -3.8210 0.9605 17 6 3.8193 -5.0039 0.7016 18 7 3.1973 -5.5724 -0.3794 19 6 3.5699 -6.8707 -0.9538 20 6 4.9718 -7.2449 -0.4629 21 6 5.0331 -7.1190 1.0620 22 6 4.9688 -5.6355 1.4481 23 1 -0.4850 0.8401 0.0004 24 1 -0.0489 -1.8622 -1.6107 25 1 -0.5071 -3.8822 -2.6538 26 1 -0.5131 -4.2217 -0.9073 27 1 1.7584 -4.7171 -2.8859 28 1 0.8554 -5.9301 -1.9408 29 1 3.4937 -3.1335 1.7510 30 1 2.8562 -7.6300 -0.6340 31 1 3.5702 -6.8021 -2.0417 32 1 5.1952 -8.2721 -0.7514 33 1 5.7046 -6.5744 -0.9117 34 1 4.1895 -7.6479 1.5054 35 1 5.9660 -7.5497 1.4257 36 1 4.8058 -5.5418 2.5219 37 1 5.9011 -5.1428 1.1728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259954367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:52 Heat of formation + Delta-G solvation = 39.428315 kcal Electronic energy + Delta-G solvation = -18219.445033 eV Core-core repulsion = 15575.474905 eV Total energy + Delta-G solvation = -2643.970128 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.99089 -36.80208 -34.71801 -32.95334 -32.07397 -29.74997 -28.78405 -26.62947 -25.54093 -23.78055 -21.63112 -21.37786 -20.68699 -18.57096 -17.25149 -16.31885 -15.74219 -15.26018 -14.68137 -14.22604 -14.10082 -13.85121 -13.44823 -13.24454 -12.92741 -12.74162 -12.36838 -11.88049 -11.64442 -11.56662 -11.03751 -11.01263 -10.87335 -10.81383 -10.63838 -10.55157 -10.35790 -10.21022 -9.45978 -9.06559 -8.46359 -7.61389 -6.93655 -6.69308 -5.93622 -3.94467 2.95714 3.39485 3.45812 3.49274 3.51561 4.00131 4.55634 4.64157 4.72690 4.83009 5.17107 5.25017 5.35216 5.43745 5.51387 5.64219 5.71731 5.74991 5.83600 5.87381 5.93859 6.02953 6.18035 6.22960 6.31559 6.44985 6.57450 6.71553 6.77176 7.21096 7.35777 7.55925 7.91527 8.02746 8.10566 8.19300 8.49951 8.80264 9.03491 9.15191 9.70447 11.15385 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028644 B = 0.007138 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.269382 B = 3921.764221 C = 4644.194667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.064 3.936 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.482 4.482 8 H 0.061 0.939 9 C 0.276 3.724 10 H 0.011 0.989 11 N -0.683 5.683 12 C 0.061 3.939 13 C -0.030 4.030 14 C -0.008 4.008 15 C -0.114 4.114 16 C -0.165 4.165 17 C -0.018 4.018 18 N -0.444 5.444 19 C 0.110 3.890 20 C -0.131 4.131 21 C -0.121 4.121 22 C -0.043 4.043 23 H 0.261 0.739 24 H 0.352 0.648 25 H 0.057 0.943 26 H 0.017 0.983 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.130 0.870 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 -14.152 -0.813 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.521 4.521 8 H 0.079 0.921 9 C 0.169 3.831 10 H 0.029 0.971 11 N -0.316 5.316 12 C -0.070 4.070 13 C -0.069 4.069 14 C -0.117 4.117 15 C -0.121 4.121 16 C -0.190 4.190 17 C -0.128 4.128 18 N -0.123 5.123 19 C -0.012 4.012 20 C -0.168 4.168 21 C -0.159 4.159 22 C -0.081 4.081 23 H 0.070 0.930 24 H 0.172 0.828 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.955 -14.499 -1.288 16.132 hybrid contribution -0.357 0.915 0.408 1.064 sum 6.599 -13.584 -0.880 15.127 Atomic orbital electron populations 1.69859 1.05952 1.26671 1.51807 1.25005 0.94842 0.99146 0.94684 0.86544 0.79920 0.83394 0.77873 1.20761 1.21538 1.19935 1.21074 0.93684 0.89640 1.47673 0.92121 1.17605 0.90237 0.89959 0.85345 0.97141 1.60883 1.36469 1.01614 1.32682 1.21774 0.93851 0.92692 0.98669 1.20114 0.94379 0.97774 0.94624 1.20034 0.96413 0.93086 1.02200 1.19961 1.00082 0.95640 0.96382 1.20169 0.99617 0.96282 1.02961 1.20135 1.01373 0.96768 0.94482 1.43551 1.27689 1.15709 1.25358 1.21712 0.96580 0.84297 0.98582 1.21807 0.96083 1.01987 0.96956 1.21605 1.02055 0.97103 0.95149 1.20157 0.95171 0.93700 0.99040 0.92979 0.82759 0.92405 0.96490 0.91499 0.92969 0.85230 0.91317 0.90431 0.90455 0.90992 0.91740 0.91363 0.90457 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 12.26 55.43 0.68 -25.40 16 2 C 0.06 1.82 5.35 -17.82 -0.10 1.72 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.48 -13.85 8.51 -34.44 -0.29 -14.15 16 8 H 0.06 1.77 7.52 -52.48 -0.39 1.38 16 9 C 0.28 7.43 2.61 -69.80 -0.18 7.25 16 10 H 0.01 0.33 8.11 -51.93 -0.42 -0.09 16 11 N -0.68 -17.02 6.41 -108.51 -0.70 -17.72 16 12 C 0.06 1.25 6.52 -3.49 -0.02 1.23 16 13 C -0.03 -0.56 6.36 -27.49 -0.17 -0.74 16 14 C -0.01 -0.16 6.81 -81.87 -0.56 -0.72 16 15 C -0.11 -2.77 5.49 -104.85 -0.58 -3.35 16 16 C -0.16 -3.66 10.22 -40.13 -0.41 -4.07 16 17 C -0.02 -0.34 6.55 -81.43 -0.53 -0.87 16 18 N -0.44 -8.05 3.14 -107.43 -0.34 -8.39 16 19 C 0.11 1.44 6.84 -3.80 -0.03 1.41 16 20 C -0.13 -1.39 5.92 -26.57 -0.16 -1.54 16 21 C -0.12 -1.32 5.96 -26.44 -0.16 -1.48 16 22 C -0.04 -0.59 6.27 -27.56 -0.17 -0.76 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.35 9.21 7.72 -39.29 -0.30 8.91 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.02 0.36 8.07 -51.93 -0.42 -0.06 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.82 8.11 -51.93 -0.42 0.39 16 34 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 293.38 15.07 4.42 4.42 Total: -1.00 -31.34 293.38 -10.06 -41.40 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.74 Total: 4.78 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -3.36 Total: -16.05 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.35 Total: -51.51 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.34 -10.06 -41.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.828 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds