Wall clock time and date at job start Mon Mar 30 2020 03:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00091 * 2 1 4 4 H 1.48497 * 109.47424 * 274.70934 * 3 2 1 5 5 H 1.48495 * 109.47408 * 34.71145 * 3 2 1 6 6 H 1.48503 * 109.47206 * 154.70947 * 3 2 1 7 7 C 1.37875 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00531 * 186.38549 * 7 2 1 9 9 C 1.50701 * 119.99883 * 6.37801 * 7 2 1 10 10 H 1.08998 * 109.69999 * 305.81010 * 9 7 2 11 11 N 1.47307 * 109.70150 * 66.41904 * 9 7 2 12 12 C 1.47046 * 111.44679 * 170.83423 * 11 9 7 13 13 C 1.53489 * 109.61311 * 288.61548 * 12 11 9 14 14 C 1.50975 * 107.92105 * 49.26609 * 13 12 11 15 15 C 1.35568 * 122.97335 * 344.05943 * 14 13 12 16 16 C 1.40189 * 107.65632 * 179.88493 * 15 14 13 17 17 C 1.34617 * 107.12739 * 0.06433 * 16 15 14 18 18 N 1.35320 * 128.76785 * 164.03663 * 14 13 12 19 19 C 1.46776 * 127.49745 * 0.10909 * 18 14 13 20 20 C 1.53182 * 108.84358 * 162.54090 * 19 18 14 21 21 C 1.53125 * 109.61640 * 51.02234 * 20 19 18 22 22 C 1.50916 * 127.25749 * 180.02562 * 17 16 15 23 23 H 0.96998 * 119.99762 * 359.97438 * 1 2 3 24 24 H 1.00898 * 111.00326 * 295.08604 * 11 9 7 25 25 H 1.09000 * 109.51228 * 168.54585 * 12 11 9 26 26 H 1.09001 * 109.41779 * 48.63305 * 12 11 9 27 27 H 1.08998 * 109.78360 * 289.64222 * 13 12 11 28 28 H 1.09007 * 109.77946 * 168.88902 * 13 12 11 29 29 H 1.07999 * 126.43921 * 180.09062 * 16 15 14 30 30 H 1.09006 * 109.57813 * 282.34928 * 19 18 14 31 31 H 1.09004 * 109.57231 * 42.73472 * 19 18 14 32 32 H 1.09004 * 109.44728 * 171.06663 * 20 19 18 33 33 H 1.09000 * 109.44981 * 291.00576 * 20 19 18 34 34 H 1.08998 * 109.52338 * 49.92048 * 21 20 19 35 35 H 1.09000 * 109.51883 * 170.09733 * 21 20 19 36 36 H 1.09006 * 109.71468 * 44.48729 * 22 17 16 37 37 H 1.08991 * 109.72042 * 283.83694 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3971 2.1039 -1.3953 5 1 1.5000 2.6219 0.7972 6 1 3.5929 1.4134 0.5981 7 6 2.0045 -1.1940 -0.0005 8 1 3.0795 -1.1971 0.1035 9 6 1.2579 -2.4950 -0.1461 10 1 0.4775 -2.5576 0.6122 11 7 0.6552 -2.5743 -1.4879 12 6 0.1031 -3.9115 -1.7512 13 6 1.2497 -4.9138 -1.9422 14 6 2.2156 -4.7390 -0.7951 15 6 2.2135 -3.6495 0.0117 16 6 3.2311 -3.8210 0.9605 17 6 3.8193 -5.0039 0.7016 18 7 3.1973 -5.5724 -0.3794 19 6 3.5699 -6.8707 -0.9538 20 6 4.9718 -7.2449 -0.4629 21 6 5.0331 -7.1190 1.0620 22 6 4.9688 -5.6355 1.4481 23 1 -0.4850 0.8401 0.0004 24 1 -0.0489 -1.8622 -1.6107 25 1 -0.5071 -3.8822 -2.6538 26 1 -0.5131 -4.2217 -0.9073 27 1 1.7584 -4.7171 -2.8859 28 1 0.8554 -5.9301 -1.9408 29 1 3.4937 -3.1335 1.7510 30 1 2.8562 -7.6300 -0.6340 31 1 3.5702 -6.8021 -2.0417 32 1 5.1952 -8.2721 -0.7514 33 1 5.7046 -6.5744 -0.9117 34 1 4.1895 -7.6479 1.5054 35 1 5.9660 -7.5497 1.4257 36 1 4.8058 -5.5418 2.5219 37 1 5.9011 -5.1428 1.1728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259954367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:52 Heat of formation + Delta-G solvation = 19.232690 kcal Electronic energy + Delta-G solvation = -18220.320781 eV Core-core repulsion = 15575.474905 eV Total energy + Delta-G solvation = -2644.845876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.47385 -38.32559 -36.08429 -34.80242 -33.63376 -31.42986 -30.31394 -28.19408 -27.18411 -25.29790 -23.24249 -22.86263 -22.07503 -20.00510 -18.75152 -18.31953 -17.44568 -16.52947 -16.46136 -15.80862 -15.54510 -14.96331 -14.91546 -14.61482 -14.36329 -14.26358 -14.12329 -13.63014 -13.20111 -13.03401 -12.80151 -12.71034 -12.26288 -12.17338 -12.01394 -11.88274 -11.70796 -11.60732 -11.40167 -11.06537 -10.65066 -9.23291 -8.81454 -8.42824 -8.07724 -6.20973 1.40266 1.42776 1.45035 1.53541 2.17019 2.24571 2.48696 3.11785 3.72038 3.83232 3.86612 3.92937 4.07906 4.09346 4.30830 4.41605 4.50080 4.60914 4.64483 4.78149 4.82354 4.85325 4.91752 4.96515 5.06328 5.08012 5.11498 5.12145 5.33536 5.35431 5.58274 5.70689 5.79128 6.16932 6.44112 6.50684 6.70668 6.83593 6.91746 7.07516 7.47684 8.96745 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028644 B = 0.007138 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.269382 B = 3921.764221 C = 4644.194667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.019 3.981 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.045 0.955 9 C 0.282 3.718 10 H -0.042 1.042 11 N -0.689 5.689 12 C 0.057 3.943 13 C -0.023 4.023 14 C -0.011 4.011 15 C -0.167 4.167 16 C -0.214 4.214 17 C 0.003 3.997 18 N -0.437 5.437 19 C 0.097 3.903 20 C -0.126 4.126 21 C -0.116 4.116 22 C -0.046 4.046 23 H 0.264 0.736 24 H 0.338 0.662 25 H 0.088 0.912 26 H 0.005 0.995 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 -16.730 -1.914 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.179 4.179 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.175 3.825 10 H -0.024 1.024 11 N -0.321 5.321 12 C -0.073 4.073 13 C -0.061 4.061 14 C -0.123 4.123 15 C -0.174 4.174 16 C -0.239 4.239 17 C -0.108 4.108 18 N -0.114 5.114 19 C -0.023 4.023 20 C -0.164 4.164 21 C -0.154 4.154 22 C -0.084 4.084 23 H 0.073 0.927 24 H 0.156 0.844 25 H 0.107 0.893 26 H 0.023 0.977 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.719 -17.119 -2.402 19.361 hybrid contribution -0.910 1.637 0.773 2.026 sum 7.809 -15.482 -1.629 17.416 Atomic orbital electron populations 1.69968 1.07122 1.27565 1.52012 1.25755 0.95738 1.02330 0.94122 0.85522 0.78606 0.79185 0.78118 1.20036 1.20544 1.19776 1.21252 0.93108 0.91350 1.48615 0.93688 1.17282 0.89501 0.90923 0.84838 1.02438 1.60820 1.36480 1.03613 1.31199 1.21960 0.95066 0.90846 0.99431 1.20147 0.93059 0.99037 0.93861 1.20270 0.97245 0.92674 1.02103 1.19918 1.01537 0.96604 0.99343 1.20223 1.01404 0.98570 1.03685 1.20708 1.01092 0.95219 0.93822 1.43886 1.26106 1.16850 1.24554 1.22232 0.98781 0.81806 0.99469 1.21859 0.93989 1.04045 0.96465 1.21620 1.03796 0.94433 0.95528 1.20367 0.93216 0.95918 0.98870 0.92712 0.84358 0.89322 0.97710 0.90487 0.89066 0.86993 0.89307 0.88977 0.86595 0.91640 0.91679 0.88213 0.89705 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 12.26 21.45 0.26 -55.52 16 2 C 0.02 1.13 5.35 84.65 0.45 1.58 16 3 Si 0.96 46.50 29.54 68.60 2.03 48.52 16 4 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.50 -30.79 8.51 25.60 0.22 -30.57 16 8 H 0.04 2.80 7.52 -2.91 -0.02 2.78 16 9 C 0.28 16.28 2.61 43.34 0.11 16.39 16 10 H -0.04 -2.71 8.11 -2.39 -0.02 -2.73 16 11 N -0.69 -35.81 6.41 -497.22 -3.19 -39.00 16 12 C 0.06 2.35 6.52 86.44 0.56 2.91 16 13 C -0.02 -0.80 6.36 30.10 0.19 -0.61 16 14 C -0.01 -0.46 6.81 41.49 0.28 -0.18 16 15 C -0.17 -8.54 5.49 -20.01 -0.11 -8.65 16 16 C -0.21 -10.02 10.22 21.91 0.22 -9.79 16 17 C 0.00 0.12 6.55 40.98 0.27 0.39 16 18 N -0.44 -15.05 3.14 -493.79 -1.55 -16.60 16 19 C 0.10 2.12 6.84 86.39 0.59 2.72 16 20 C -0.13 -2.05 5.92 30.70 0.18 -1.87 16 21 C -0.12 -2.01 5.96 30.78 0.18 -1.82 16 22 C -0.05 -1.15 6.27 30.06 0.19 -0.96 16 23 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 24 H 0.34 18.59 7.72 -89.70 -0.69 17.90 16 25 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.00 0.20 8.07 -2.39 -0.02 0.18 16 27 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 29 H 0.11 5.38 8.06 -2.91 -0.02 5.36 16 30 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.09 1.80 8.14 -2.38 -0.02 1.79 16 32 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.06 1.19 8.11 -2.39 -0.02 1.17 16 34 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -73.61 293.38 1.26 -72.35 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.36 Total: 20.72 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 3.35 Total: -30.47 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -4.48 Total: -111.12 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -73.61 1.26 -72.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.583 kcal (2) G-P(sol) polarization free energy of solvation -73.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds