Wall clock time and date at job start Mon Mar 30 2020 03:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.69502 * 60.56568 * 9 7 2 11 11 N 1.47309 * 109.69808 * 300.00313 * 9 7 2 12 12 C 1.46958 * 111.38783 * 189.11394 * 11 9 7 13 13 C 1.53493 * 109.67316 * 71.42145 * 12 11 9 14 14 C 1.50969 * 107.89082 * 310.73013 * 13 12 11 15 15 C 1.35574 * 122.96430 * 15.89434 * 14 13 12 16 16 C 1.40181 * 107.66334 * 180.16987 * 15 14 13 17 17 C 1.34616 * 107.12975 * 359.81624 * 16 15 14 18 18 N 1.35323 * 128.78935 * 195.89626 * 14 13 12 19 19 C 1.46786 * 127.50760 * 359.93973 * 18 14 13 20 20 C 1.53178 * 108.86242 * 162.57569 * 19 18 14 21 21 C 1.53137 * 109.62111 * 50.98550 * 20 19 18 22 22 C 1.50910 * 127.25540 * 180.22287 * 17 16 15 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.00896 * 110.99815 * 313.34995 * 11 9 7 25 25 H 1.08997 * 109.43616 * 191.47913 * 12 11 9 26 26 H 1.08993 * 109.43551 * 311.40092 * 12 11 9 27 27 H 1.08999 * 109.77604 * 70.33010 * 13 12 11 28 28 H 1.08997 * 109.77589 * 191.13231 * 13 12 11 29 29 H 1.07996 * 126.43950 * 179.83347 * 16 15 14 30 30 H 1.09001 * 109.57217 * 282.39215 * 19 18 14 31 31 H 1.09005 * 109.56995 * 42.76405 * 19 18 14 32 32 H 1.09000 * 109.44462 * 290.94213 * 20 19 18 33 33 H 1.08994 * 109.44640 * 171.03331 * 20 19 18 34 34 H 1.08993 * 109.52164 * 170.08828 * 21 20 19 35 35 H 1.08995 * 109.51964 * 49.89666 * 21 20 19 36 36 H 1.08998 * 109.71981 * 283.76326 * 22 17 16 37 37 H 1.09003 * 109.71566 * 44.36831 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6310 -2.5654 -0.8935 11 7 0.4018 -2.5822 1.2013 12 6 -0.1833 -3.9218 1.3523 13 6 0.9091 -4.9197 1.7611 14 6 2.0774 -4.7387 0.8223 15 6 2.2254 -3.6483 0.0304 16 6 3.4073 -3.8138 -0.7049 17 6 3.9418 -4.9931 -0.3362 18 7 3.1257 -5.5662 0.6040 19 6 3.3874 -6.8636 1.2388 20 6 4.4142 -7.6283 0.3978 21 6 5.6262 -6.7325 0.1264 22 6 5.2196 -5.6154 -0.8434 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9168 -2.3173 2.0274 25 1 -0.9563 -3.8955 2.1203 26 1 -0.6232 -4.2343 0.4053 27 1 1.2248 -4.7216 2.7854 28 1 0.5270 -5.9374 1.6825 29 1 3.8131 -3.1247 -1.4307 30 1 3.7821 -6.7060 2.2426 31 1 2.4616 -7.4363 1.2943 32 1 3.9610 -7.9223 -0.5489 33 1 4.7349 -8.5188 0.9382 34 1 6.4259 -7.3260 -0.3163 35 1 5.9719 -6.2941 1.0625 36 1 5.0565 -6.0324 -1.8371 37 1 6.0048 -4.8604 -0.8857 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259954383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:54 Heat of formation + Delta-G solvation = 36.692287 kcal Electronic energy + Delta-G solvation = -18295.681665 eV Core-core repulsion = 15651.592893 eV Total energy + Delta-G solvation = -2644.088772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16020 -37.11548 -34.90462 -33.09696 -32.11600 -29.61010 -28.69081 -26.60140 -25.33362 -23.60614 -21.83219 -21.46881 -20.85538 -18.86127 -17.66632 -16.83074 -15.82984 -15.44124 -14.23778 -14.13261 -13.93480 -13.76772 -13.62573 -13.49451 -13.01321 -12.99298 -12.26438 -12.07679 -11.93400 -11.56077 -11.11366 -10.96373 -10.90491 -10.79087 -10.66503 -10.62631 -10.25316 -10.13835 -9.95020 -8.47582 -8.22184 -7.64516 -7.22245 -6.92192 -6.03387 -3.84862 2.80674 3.37053 3.55465 3.58801 3.74776 3.84929 4.54130 4.62403 4.71328 4.73557 5.07639 5.25533 5.29253 5.34798 5.40392 5.55005 5.62012 5.66641 5.72769 5.75439 5.84371 5.92937 6.00695 6.03366 6.13960 6.36857 6.47162 6.56187 6.58439 7.08903 7.19988 7.43618 7.75608 7.96740 8.06218 8.25043 8.48630 8.75443 8.89701 9.20864 9.96064 11.34844 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.007236 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.624207 B = 3868.502675 C = 4643.026199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.032 3.968 3 Si 1.066 2.934 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.600 4.600 8 H 0.049 0.951 9 C 0.265 3.735 10 H 0.035 0.965 11 N -0.671 5.671 12 C 0.062 3.938 13 C -0.074 4.074 14 C -0.021 4.021 15 C -0.141 4.141 16 C -0.162 4.162 17 C -0.016 4.016 18 N -0.442 5.442 19 C 0.110 3.890 20 C -0.130 4.130 21 C -0.122 4.122 22 C -0.043 4.043 23 H 0.290 0.710 24 H 0.333 0.667 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.130 0.870 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.644 -14.876 2.016 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.895 3.105 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.639 4.639 8 H 0.068 0.932 9 C 0.158 3.842 10 H 0.053 0.947 11 N -0.300 5.300 12 C -0.070 4.070 13 C -0.114 4.114 14 C -0.131 4.131 15 C -0.149 4.149 16 C -0.187 4.187 17 C -0.125 4.125 18 N -0.120 5.120 19 C -0.012 4.012 20 C -0.168 4.168 21 C -0.160 4.160 22 C -0.081 4.081 23 H 0.103 0.897 24 H 0.151 0.849 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.148 0.852 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.891 -13.301 1.873 15.097 hybrid contribution 1.095 -2.366 0.446 2.645 sum 7.987 -15.667 2.319 17.737 Atomic orbital electron populations 1.70529 1.06788 1.32797 1.43195 1.25629 0.96667 1.01851 0.93497 0.83617 0.74711 0.75680 0.76455 1.21800 1.21799 1.21277 1.21846 0.93720 0.90560 1.57754 0.93246 1.17922 0.87045 0.90427 0.88855 0.94732 1.61293 1.40425 1.20942 1.07342 1.22016 0.94990 0.89609 1.00366 1.20893 0.93675 1.00396 0.96460 1.20017 0.93208 0.93659 1.06167 1.20765 0.98745 0.96786 0.98619 1.20207 0.97755 0.96242 1.04535 1.20208 0.96488 0.96728 0.99079 1.43568 1.19303 1.15739 1.33410 1.21726 0.99547 0.83417 0.96543 1.21805 0.95999 0.98290 1.00686 1.21607 0.97108 0.97009 1.00239 1.20168 0.93115 0.96886 0.97966 0.89724 0.84950 0.91876 0.92045 0.92073 0.92605 0.85181 0.91220 0.90510 0.91049 0.90341 0.91220 0.91665 0.91090 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.51 55.43 0.75 -26.79 16 2 C 0.03 0.94 5.39 -17.82 -0.10 0.85 16 3 Si 1.07 25.87 29.90 -169.99 -5.08 20.79 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.60 -17.25 8.43 -34.44 -0.29 -17.55 16 8 H 0.05 1.45 7.42 -52.48 -0.39 1.06 16 9 C 0.26 6.98 2.31 -69.80 -0.16 6.82 16 10 H 0.04 1.01 8.03 -51.93 -0.42 0.60 16 11 N -0.67 -16.18 5.18 -108.57 -0.56 -16.74 16 12 C 0.06 1.20 6.54 -3.54 -0.02 1.18 16 13 C -0.07 -1.31 6.27 -27.50 -0.17 -1.48 16 14 C -0.02 -0.42 6.81 -81.87 -0.56 -0.98 16 15 C -0.14 -3.33 5.50 -104.85 -0.58 -3.91 16 16 C -0.16 -3.56 10.15 -40.13 -0.41 -3.97 16 17 C -0.02 -0.28 6.55 -81.43 -0.53 -0.82 16 18 N -0.44 -7.84 3.14 -107.42 -0.34 -8.17 16 19 C 0.11 1.41 6.84 -3.79 -0.03 1.38 16 20 C -0.13 -1.34 5.92 -26.57 -0.16 -1.50 16 21 C -0.12 -1.31 5.96 -26.45 -0.16 -1.47 16 22 C -0.04 -0.59 6.27 -27.57 -0.17 -0.76 16 23 H 0.29 8.93 6.41 -40.82 -0.26 8.67 16 24 H 0.33 8.19 8.57 -39.29 -0.34 7.86 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.13 2.86 8.06 -52.49 -0.42 2.43 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.77 8.11 -51.93 -0.42 0.34 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 292.04 15.07 4.40 4.40 Total: -1.00 -32.17 292.04 -9.85 -42.02 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.69 Total: 6.69 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -3.33 Total: -22.20 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.15 Total: -51.70 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.17 -9.85 -42.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.715 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds