Wall clock time and date at job start Mon Mar 30 2020 03:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.69502 * 60.56568 * 9 7 2 11 11 N 1.47309 * 109.69808 * 300.00313 * 9 7 2 12 12 C 1.46958 * 111.38783 * 189.11394 * 11 9 7 13 13 C 1.53493 * 109.67316 * 71.42145 * 12 11 9 14 14 C 1.50969 * 107.89082 * 310.73013 * 13 12 11 15 15 C 1.35574 * 122.96430 * 15.89434 * 14 13 12 16 16 C 1.40181 * 107.66334 * 180.16987 * 15 14 13 17 17 C 1.34616 * 107.12975 * 359.81624 * 16 15 14 18 18 N 1.35323 * 128.78935 * 195.89626 * 14 13 12 19 19 C 1.46786 * 127.50760 * 359.93973 * 18 14 13 20 20 C 1.53178 * 108.86242 * 162.57569 * 19 18 14 21 21 C 1.53137 * 109.62111 * 50.98550 * 20 19 18 22 22 C 1.50910 * 127.25540 * 180.22287 * 17 16 15 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.00896 * 110.99815 * 313.34995 * 11 9 7 25 25 H 1.08997 * 109.43616 * 191.47913 * 12 11 9 26 26 H 1.08993 * 109.43551 * 311.40092 * 12 11 9 27 27 H 1.08999 * 109.77604 * 70.33010 * 13 12 11 28 28 H 1.08997 * 109.77589 * 191.13231 * 13 12 11 29 29 H 1.07996 * 126.43950 * 179.83347 * 16 15 14 30 30 H 1.09001 * 109.57217 * 282.39215 * 19 18 14 31 31 H 1.09005 * 109.56995 * 42.76405 * 19 18 14 32 32 H 1.09000 * 109.44462 * 290.94213 * 20 19 18 33 33 H 1.08994 * 109.44640 * 171.03331 * 20 19 18 34 34 H 1.08993 * 109.52164 * 170.08828 * 21 20 19 35 35 H 1.08995 * 109.51964 * 49.89666 * 21 20 19 36 36 H 1.08998 * 109.71981 * 283.76326 * 22 17 16 37 37 H 1.09003 * 109.71566 * 44.36831 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6310 -2.5654 -0.8935 11 7 0.4018 -2.5822 1.2013 12 6 -0.1833 -3.9218 1.3523 13 6 0.9091 -4.9197 1.7611 14 6 2.0774 -4.7387 0.8223 15 6 2.2254 -3.6483 0.0304 16 6 3.4073 -3.8138 -0.7049 17 6 3.9418 -4.9931 -0.3362 18 7 3.1257 -5.5662 0.6040 19 6 3.3874 -6.8636 1.2388 20 6 4.4142 -7.6283 0.3978 21 6 5.6262 -6.7325 0.1264 22 6 5.2196 -5.6154 -0.8434 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9168 -2.3173 2.0274 25 1 -0.9563 -3.8955 2.1203 26 1 -0.6232 -4.2343 0.4053 27 1 1.2248 -4.7216 2.7854 28 1 0.5270 -5.9374 1.6825 29 1 3.8131 -3.1247 -1.4307 30 1 3.7821 -6.7060 2.2426 31 1 2.4616 -7.4363 1.2943 32 1 3.9610 -7.9223 -0.5489 33 1 4.7349 -8.5188 0.9382 34 1 6.4259 -7.3260 -0.3163 35 1 5.9719 -6.2941 1.0625 36 1 5.0565 -6.0324 -1.8371 37 1 6.0048 -4.8604 -0.8857 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259954383.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:54 Heat of formation + Delta-G solvation = 16.196099 kcal Electronic energy + Delta-G solvation = -18296.570446 eV Core-core repulsion = 15651.592893 eV Total energy + Delta-G solvation = -2644.977553 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.62800 -38.64907 -36.20846 -34.92921 -33.65740 -31.26244 -30.18886 -28.06801 -26.99668 -25.21009 -23.47189 -22.97491 -22.20065 -20.34692 -19.09861 -18.84385 -17.29986 -16.71488 -15.75413 -15.60779 -15.40223 -15.24191 -15.08291 -14.75337 -14.64122 -14.39056 -13.90231 -13.68379 -13.39896 -13.13705 -12.63935 -12.54721 -12.33903 -12.13599 -11.97462 -11.92766 -11.88869 -11.73619 -11.63553 -10.57605 -10.45194 -9.25410 -9.09084 -8.57111 -8.27947 -6.18793 1.31902 1.55244 1.64848 1.82689 2.05554 2.13500 2.66601 3.30253 3.63396 3.73114 3.77333 3.84983 3.98767 3.99713 4.15357 4.32311 4.35578 4.40999 4.54525 4.66938 4.72474 4.83628 4.86212 4.88076 4.92732 4.98821 5.01191 5.04994 5.22649 5.28028 5.53293 5.58246 5.98692 6.18809 6.29429 6.45778 6.64742 6.71566 6.78730 7.00467 7.70203 9.00031 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.007236 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.624207 B = 3868.502675 C = 4643.026199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 1.114 2.886 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.610 4.610 8 H 0.034 0.966 9 C 0.271 3.729 10 H -0.013 1.013 11 N -0.685 5.685 12 C 0.061 3.939 13 C -0.063 4.063 14 C -0.020 4.020 15 C -0.192 4.192 16 C -0.212 4.212 17 C 0.005 3.995 18 N -0.435 5.435 19 C 0.096 3.904 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.046 4.046 23 H 0.277 0.723 24 H 0.328 0.672 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.288 -17.629 3.470 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.938 3.062 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.648 4.648 8 H 0.052 0.948 9 C 0.163 3.837 10 H 0.004 0.996 11 N -0.313 5.313 12 C -0.069 4.069 13 C -0.102 4.102 14 C -0.132 4.132 15 C -0.200 4.200 16 C -0.237 4.237 17 C -0.107 4.107 18 N -0.111 5.111 19 C -0.023 4.023 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.084 4.084 23 H 0.088 0.912 24 H 0.145 0.855 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.542 -16.104 3.340 18.533 hybrid contribution 0.597 -1.628 -0.035 1.735 sum 9.139 -17.733 3.305 20.221 Atomic orbital electron populations 1.70646 1.07594 1.31998 1.45528 1.27045 0.96766 1.05467 0.92503 0.82974 0.73942 0.71916 0.77389 1.20121 1.20588 1.20840 1.22088 0.93146 0.92326 1.57286 0.94811 1.17478 0.87146 0.91062 0.87988 0.99565 1.61008 1.39892 1.24357 1.06045 1.22089 0.96100 0.87988 1.00773 1.20829 0.91730 1.01462 0.96227 1.20268 0.94431 0.93053 1.05458 1.20609 0.99690 0.97809 1.01932 1.20240 0.98871 0.98543 1.06086 1.20758 0.97307 0.95183 0.97454 1.43906 1.17822 1.16892 1.32490 1.22240 1.01576 0.81132 0.97384 1.21857 0.94788 0.98950 1.00648 1.21624 0.98308 0.96222 0.99324 1.20376 0.90586 0.98053 0.99414 0.91159 0.85543 0.89130 0.93290 0.90591 0.89066 0.87211 0.89747 0.88712 0.91280 0.86566 0.88024 0.92030 0.89689 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.83 13.51 21.45 0.29 -58.54 16 2 C -0.02 -0.91 5.39 84.65 0.46 -0.45 16 3 Si 1.11 53.48 29.90 68.60 2.05 55.53 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 7 C -0.61 -37.13 8.43 25.60 0.22 -36.91 16 8 H 0.03 2.10 7.42 -2.91 -0.02 2.08 16 9 C 0.27 15.27 2.31 43.34 0.10 15.37 16 10 H -0.01 -0.84 8.03 -2.38 -0.02 -0.86 16 11 N -0.68 -34.35 5.18 -497.42 -2.58 -36.92 16 12 C 0.06 2.38 6.54 86.46 0.57 2.95 16 13 C -0.06 -2.09 6.27 30.10 0.19 -1.90 16 14 C -0.02 -0.81 6.81 41.49 0.28 -0.53 16 15 C -0.19 -9.51 5.50 -20.01 -0.11 -9.63 16 16 C -0.21 -9.82 10.15 21.91 0.22 -9.60 16 17 C 0.00 0.17 6.55 40.98 0.27 0.44 16 18 N -0.43 -14.55 3.14 -493.78 -1.55 -16.10 16 19 C 0.10 2.06 6.84 86.38 0.59 2.65 16 20 C -0.13 -1.94 5.92 30.70 0.18 -1.76 16 21 C -0.12 -2.01 5.96 30.78 0.18 -1.82 16 22 C -0.05 -1.15 6.27 30.05 0.19 -0.96 16 23 H 0.28 18.01 6.41 -92.71 -0.59 17.42 16 24 H 0.33 16.68 8.57 -89.70 -0.77 15.91 16 25 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 26 H 0.05 2.01 8.07 -2.39 -0.02 1.99 16 27 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.11 5.28 8.06 -2.91 -0.02 5.26 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.07 1.15 8.11 -2.39 -0.02 1.14 16 33 H 0.12 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -75.52 292.04 2.01 -73.51 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.46 Total: 24.68 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 3.33 Total: -42.15 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -3.84 Total: -111.57 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 2.05 Total: 55.53 kcal Total: -75.52 2.01 -73.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259954383.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.708 kcal (2) G-P(sol) polarization free energy of solvation -75.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds