Wall clock time and date at job start Mon Mar 30 2020 04:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47967 * 110.99935 * 2 1 4 4 C 1.53936 * 86.17925 * 222.42205 * 3 2 1 5 5 C 1.50699 * 113.73491 * 138.08085 * 4 3 2 6 6 C 1.38238 * 120.00006 * 119.99359 * 5 4 3 7 7 C 1.38236 * 119.99958 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00007 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00099 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47244 * 339.99376 * 9 8 7 11 11 N 1.46899 * 109.47048 * 219.99691 * 9 8 7 12 12 C 1.50697 * 109.47488 * 99.99685 * 9 8 7 13 13 H 1.08005 * 119.99347 * 24.92955 * 12 9 8 14 14 C 1.37872 * 120.00223 * 204.92823 * 12 9 8 15 15 N 1.31513 * 119.99870 * 357.16446 * 14 12 9 16 16 Si 1.86797 * 120.00006 * 177.15828 * 14 12 9 17 17 H 1.48503 * 109.47318 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47383 * 300.00040 * 16 14 12 19 19 H 1.48504 * 109.47100 * 60.00313 * 16 14 12 20 20 C 1.38242 * 119.99928 * 0.27231 * 8 7 6 21 21 C 1.38234 * 119.99945 * 300.01762 * 5 4 3 22 22 C 1.47962 * 110.99749 * 260.64522 * 2 1 3 23 23 H 1.08997 * 109.47086 * 59.99936 * 1 2 3 24 24 H 1.09003 * 109.46824 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46971 * 299.99507 * 1 2 3 26 26 H 1.08994 * 113.75819 * 108.10443 * 3 2 1 27 27 H 1.09000 * 113.85933 * 336.74617 * 3 2 1 28 28 H 1.09008 * 113.72917 * 269.25093 * 4 3 2 29 29 H 1.08003 * 119.99977 * 0.02562 * 6 5 4 30 30 H 1.08003 * 120.00009 * 179.97438 * 7 6 5 31 31 H 1.00902 * 111.00548 * 174.35096 * 11 9 8 32 32 H 1.00898 * 111.00445 * 298.31017 * 11 9 8 33 33 H 0.97002 * 120.00309 * 354.36264 * 15 14 12 34 34 H 1.07997 * 119.99941 * 179.73572 * 20 8 7 35 35 H 1.07997 * 120.00207 * 0.02562 * 21 5 4 36 36 H 1.08995 * 113.76256 * 23.26036 * 22 2 1 37 37 H 1.09006 * 113.75518 * 251.89375 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3814 0.0000 4 6 3.0210 0.8793 -1.0361 5 6 3.2574 1.8424 -2.1709 6 6 4.5238 2.3492 -2.3949 7 6 4.7407 3.2322 -3.4361 8 6 3.6913 3.6079 -4.2537 9 6 3.9279 4.5701 -5.3892 10 1 4.8488 5.1249 -5.2095 11 7 2.8009 5.5080 -5.4791 12 6 4.0474 3.8032 -6.6809 13 1 3.5835 2.8326 -6.7775 14 6 4.7488 4.3405 -7.7393 15 7 5.2661 5.5457 -7.6412 16 14 4.9644 3.3567 -9.3125 17 1 5.7512 4.1516 -10.2895 18 1 5.6826 2.0923 -9.0112 19 1 3.6314 3.0440 -9.8874 20 6 2.4238 3.1050 -4.0266 21 6 2.2076 2.2193 -2.9875 22 6 1.9992 -0.2245 -1.3630 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4460 1.6803 0.9482 27 1 1.3022 2.1212 -0.3936 28 1 3.9459 0.5069 -0.5954 29 1 5.3440 2.0547 -1.7568 30 1 5.7301 3.6285 -3.6109 31 1 2.9772 6.2199 -6.1721 32 1 1.9391 5.0203 -5.6729 33 1 5.0859 6.0886 -6.8578 34 1 1.6031 3.4019 -4.6627 35 1 1.2181 1.8240 -2.8121 36 1 1.3010 0.0441 -2.1556 37 1 2.4460 -1.2088 -1.5037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260009485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:54 Heat of formation + Delta-G solvation = 48.840929 kcal Electronic energy + Delta-G solvation = -17391.502498 eV Core-core repulsion = 14747.940531 eV Total energy + Delta-G solvation = -2643.561967 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.37233 -38.32315 -35.04459 -32.13385 -30.97537 -30.28354 -28.71315 -26.17461 -25.70815 -24.12184 -22.39896 -22.12424 -20.23015 -19.17950 -17.12815 -16.62110 -15.84682 -15.29802 -14.92754 -14.54115 -14.14666 -13.85191 -13.63338 -13.14233 -13.00466 -12.88811 -12.53664 -12.24346 -12.22275 -11.87595 -11.50102 -11.14484 -10.91935 -10.80553 -10.59690 -10.32718 -10.21189 -9.70610 -9.53244 -8.95649 -8.66960 -8.33115 -7.96440 -7.29799 -6.49075 -4.29749 1.95924 2.01059 3.34674 3.36511 3.55274 3.84945 4.24662 4.42777 4.65881 4.78837 5.00942 5.16326 5.19489 5.23572 5.34773 5.39215 5.46619 5.54410 5.61296 5.68492 5.70446 5.72915 5.96591 6.15008 6.15817 6.21001 6.39773 6.51935 6.62365 6.88234 6.92058 7.08097 7.11748 7.48741 7.66068 7.88056 8.18243 8.42502 8.61166 8.68562 9.43091 10.83239 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037130 B = 0.004837 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.935770 B = 5787.369081 C = 5912.198496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.489 5.489 3 C 0.009 3.991 4 C -0.066 4.066 5 C -0.109 4.109 6 C -0.112 4.112 7 C -0.123 4.123 8 C -0.015 4.015 9 C 0.219 3.781 10 H 0.051 0.949 11 N -0.853 5.853 12 C -0.622 4.622 13 H 0.050 0.950 14 C 0.028 3.972 15 N -0.905 5.905 16 Si 1.066 2.934 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.288 1.288 20 C -0.111 4.111 21 C -0.119 4.119 22 C 0.006 3.994 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.331 0.669 32 H 0.320 0.680 33 H 0.271 0.729 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.422 -8.106 11.592 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.120 4.120 4 C -0.085 4.085 5 C -0.110 4.110 6 C -0.130 4.130 7 C -0.142 4.142 8 C -0.016 4.016 9 C 0.110 3.890 10 H 0.069 0.931 11 N -0.380 5.380 12 C -0.662 4.662 13 H 0.068 0.932 14 C -0.178 4.178 15 N -0.541 5.541 16 Si 0.894 3.106 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.214 1.214 20 C -0.129 4.129 21 C -0.137 4.137 22 C -0.123 4.123 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.371 -8.354 11.432 15.143 hybrid contribution -1.192 0.065 -0.209 1.212 sum -6.563 -8.290 11.223 15.419 Atomic orbital electron populations 1.22852 0.89933 1.02199 1.01060 1.68463 1.08920 1.18909 1.24780 1.24057 0.96958 0.91171 0.99803 1.21796 0.98332 0.94379 0.94017 1.19372 0.93969 1.00063 0.97599 1.20850 0.95903 0.98093 0.98124 1.20993 0.99018 0.98838 0.95311 1.20270 0.92252 0.95204 0.93865 1.18231 0.91228 0.88971 0.90596 0.93106 1.59605 1.05810 1.17765 1.54828 1.22529 1.39115 1.06428 0.98116 0.93199 1.25898 0.92442 0.97174 1.02269 1.70826 1.42016 1.09393 1.31833 0.83580 0.76529 0.75195 0.75281 1.20645 1.21302 1.21394 1.20843 0.97275 0.97345 0.97469 1.20772 0.97627 0.98946 0.96355 1.24160 0.97147 1.00085 0.90879 0.94655 0.91312 0.91494 0.89456 0.90906 0.88080 0.86982 0.86686 0.85740 0.86912 0.91739 0.86770 0.87633 0.90655 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.06 0.58 0.47 16 2 N -0.49 -5.68 6.56 -246.65 -1.62 -7.30 16 3 C 0.01 0.10 7.45 -2.76 -0.02 0.08 16 4 C -0.07 -0.84 4.16 -90.84 -0.38 -1.22 16 5 C -0.11 -1.71 5.30 -104.62 -0.55 -2.26 16 6 C -0.11 -1.87 9.71 -39.58 -0.38 -2.25 16 7 C -0.12 -2.44 9.67 -39.58 -0.38 -2.82 16 8 C -0.02 -0.33 4.94 -104.62 -0.52 -0.85 16 9 C 0.22 5.33 2.57 -70.02 -0.18 5.15 16 10 H 0.05 1.36 6.86 -51.93 -0.36 1.00 16 11 N -0.85 -19.07 9.02 -6.65 -0.06 -19.13 16 12 C -0.62 -16.68 8.57 -34.44 -0.30 -16.98 16 13 H 0.05 1.37 7.81 -52.48 -0.41 0.96 16 14 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 15 N -0.91 -25.95 13.58 55.43 0.75 -25.20 16 16 Si 1.07 24.41 29.90 -169.99 -5.08 19.33 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.11 -2.15 9.30 -39.58 -0.37 -2.52 16 21 C -0.12 -1.96 8.63 -39.58 -0.34 -2.30 16 22 C 0.01 0.07 7.34 -2.77 -0.02 0.05 16 23 H 0.03 0.34 7.62 -51.93 -0.40 -0.05 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.87 7.53 -51.93 -0.39 0.47 16 28 H 0.10 1.21 8.10 -51.92 -0.42 0.79 16 29 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 30 H 0.12 2.24 8.04 -52.48 -0.42 1.82 16 31 H 0.33 7.63 8.50 -39.29 -0.33 7.30 16 32 H 0.32 6.77 7.39 -39.29 -0.29 6.48 16 33 H 0.27 7.71 6.30 -40.82 -0.26 7.45 16 34 H 0.11 2.16 6.69 -52.49 -0.35 1.81 16 35 H 0.11 1.50 6.65 -52.49 -0.35 1.15 16 36 H 0.08 0.90 5.78 -51.93 -0.30 0.60 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 300.98 15.07 4.54 4.54 Total: -1.00 -28.51 300.98 -9.62 -38.13 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -5.19 Total: 14.42 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -2.96 Total: -24.78 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.92 Total: -51.62 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.33 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.51 -9.62 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.966 kcal (2) G-P(sol) polarization free energy of solvation -28.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds