Wall clock time and date at job start Mon Mar 30 2020 04:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47967 * 110.99935 * 2 1 4 4 C 1.53936 * 86.17925 * 222.42205 * 3 2 1 5 5 C 1.50699 * 113.73491 * 138.08085 * 4 3 2 6 6 C 1.38238 * 120.00006 * 119.99359 * 5 4 3 7 7 C 1.38236 * 119.99958 * 179.97438 * 6 5 4 8 8 C 1.38235 * 120.00007 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00099 * 180.02562 * 8 7 6 10 10 H 1.09004 * 109.47244 * 339.99376 * 9 8 7 11 11 N 1.46899 * 109.47048 * 219.99691 * 9 8 7 12 12 C 1.50697 * 109.47488 * 99.99685 * 9 8 7 13 13 H 1.08005 * 119.99347 * 24.92955 * 12 9 8 14 14 C 1.37872 * 120.00223 * 204.92823 * 12 9 8 15 15 N 1.31513 * 119.99870 * 357.16446 * 14 12 9 16 16 Si 1.86797 * 120.00006 * 177.15828 * 14 12 9 17 17 H 1.48503 * 109.47318 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47383 * 300.00040 * 16 14 12 19 19 H 1.48504 * 109.47100 * 60.00313 * 16 14 12 20 20 C 1.38242 * 119.99928 * 0.27231 * 8 7 6 21 21 C 1.38234 * 119.99945 * 300.01762 * 5 4 3 22 22 C 1.47962 * 110.99749 * 260.64522 * 2 1 3 23 23 H 1.08997 * 109.47086 * 59.99936 * 1 2 3 24 24 H 1.09003 * 109.46824 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46971 * 299.99507 * 1 2 3 26 26 H 1.08994 * 113.75819 * 108.10443 * 3 2 1 27 27 H 1.09000 * 113.85933 * 336.74617 * 3 2 1 28 28 H 1.09008 * 113.72917 * 269.25093 * 4 3 2 29 29 H 1.08003 * 119.99977 * 0.02562 * 6 5 4 30 30 H 1.08003 * 120.00009 * 179.97438 * 7 6 5 31 31 H 1.00902 * 111.00548 * 174.35096 * 11 9 8 32 32 H 1.00898 * 111.00445 * 298.31017 * 11 9 8 33 33 H 0.97002 * 120.00309 * 354.36264 * 15 14 12 34 34 H 1.07997 * 119.99941 * 179.73572 * 20 8 7 35 35 H 1.07997 * 120.00207 * 0.02562 * 21 5 4 36 36 H 1.08995 * 113.76256 * 23.26036 * 22 2 1 37 37 H 1.09006 * 113.75518 * 251.89375 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3814 0.0000 4 6 3.0210 0.8793 -1.0361 5 6 3.2574 1.8424 -2.1709 6 6 4.5238 2.3492 -2.3949 7 6 4.7407 3.2322 -3.4361 8 6 3.6913 3.6079 -4.2537 9 6 3.9279 4.5701 -5.3892 10 1 4.8488 5.1249 -5.2095 11 7 2.8009 5.5080 -5.4791 12 6 4.0474 3.8032 -6.6809 13 1 3.5835 2.8326 -6.7775 14 6 4.7488 4.3405 -7.7393 15 7 5.2661 5.5457 -7.6412 16 14 4.9644 3.3567 -9.3125 17 1 5.7512 4.1516 -10.2895 18 1 5.6826 2.0923 -9.0112 19 1 3.6314 3.0440 -9.8874 20 6 2.4238 3.1050 -4.0266 21 6 2.2076 2.2193 -2.9875 22 6 1.9992 -0.2245 -1.3630 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4460 1.6803 0.9482 27 1 1.3022 2.1212 -0.3936 28 1 3.9459 0.5069 -0.5954 29 1 5.3440 2.0547 -1.7568 30 1 5.7301 3.6285 -3.6109 31 1 2.9772 6.2199 -6.1721 32 1 1.9391 5.0203 -5.6729 33 1 5.0859 6.0886 -6.8578 34 1 1.6031 3.4019 -4.6627 35 1 1.2181 1.8240 -2.8121 36 1 1.3010 0.0441 -2.1556 37 1 2.4460 -1.2088 -1.5037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260009485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:53 Heat of formation + Delta-G solvation = 29.132904 kcal Electronic energy + Delta-G solvation = -17392.357102 eV Core-core repulsion = 14747.940531 eV Total energy + Delta-G solvation = -2644.416571 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.42533 -39.69022 -36.83983 -33.82015 -32.43906 -31.71255 -29.97219 -27.54477 -27.06228 -25.53967 -23.87044 -23.48156 -21.70832 -20.28529 -19.08999 -17.99695 -16.87132 -16.73326 -15.96074 -15.81415 -15.71938 -15.52229 -15.06832 -14.91928 -14.26148 -14.13182 -13.86299 -13.62386 -13.49642 -13.48878 -12.70523 -12.46438 -12.38473 -12.02224 -11.92928 -11.82953 -11.63215 -11.48787 -11.29586 -10.72327 -9.82411 -9.76157 -9.54322 -9.16127 -8.59799 -6.46361 0.52905 0.57933 1.49482 1.54952 1.75574 2.49608 2.87515 2.96753 3.11358 3.65594 3.78816 3.96924 4.03555 4.15257 4.19114 4.27470 4.32200 4.44472 4.53687 4.56389 4.62794 4.73835 4.77990 4.84469 4.93621 4.98598 5.13491 5.17843 5.31544 5.32487 5.60937 5.72483 5.74902 5.99555 6.03505 6.04255 6.19532 6.49057 6.51338 6.78822 7.33787 8.66857 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037130 B = 0.004837 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.935770 B = 5787.369081 C = 5912.198496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.495 5.495 3 C 0.012 3.988 4 C -0.068 4.068 5 C -0.094 4.094 6 C -0.108 4.108 7 C -0.142 4.142 8 C -0.052 4.052 9 C 0.222 3.778 10 H 0.016 0.984 11 N -0.841 5.841 12 C -0.627 4.627 13 H 0.040 0.960 14 C -0.018 4.018 15 N -0.929 5.929 16 Si 1.111 2.889 17 H -0.283 1.283 18 H -0.276 1.276 19 H -0.271 1.271 20 C -0.122 4.122 21 C -0.112 4.112 22 C 0.007 3.993 23 H 0.036 0.964 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.104 0.896 31 H 0.325 0.675 32 H 0.328 0.672 33 H 0.261 0.739 34 H 0.112 0.888 35 H 0.133 0.867 36 H 0.075 0.925 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 -10.154 12.882 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 N -0.218 5.218 3 C -0.116 4.116 4 C -0.086 4.086 5 C -0.095 4.095 6 C -0.126 4.126 7 C -0.161 4.161 8 C -0.052 4.052 9 C 0.113 3.887 10 H 0.034 0.966 11 N -0.368 5.368 12 C -0.667 4.667 13 H 0.058 0.942 14 C -0.219 4.219 15 N -0.566 5.566 16 Si 0.933 3.067 17 H -0.208 1.208 18 H -0.202 1.202 19 H -0.196 1.196 20 C -0.140 4.140 21 C -0.130 4.130 22 C -0.121 4.121 23 H 0.055 0.945 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.159 0.841 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.151 0.849 36 H 0.093 0.907 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.434 -10.409 12.746 17.669 hybrid contribution -0.918 0.658 -0.474 1.225 sum -7.352 -9.751 12.271 17.313 Atomic orbital electron populations 1.22909 0.88806 1.02945 1.01567 1.68470 1.10127 1.18682 1.24474 1.24049 0.96445 0.91295 0.99838 1.21888 0.99476 0.94096 0.93182 1.19738 0.93038 0.99135 0.97565 1.21146 0.97513 0.96789 0.97170 1.21066 0.98246 1.00197 0.96590 1.20137 0.94093 0.96503 0.94497 1.18038 0.90332 0.89149 0.91191 0.96570 1.59529 1.05645 1.17229 1.54394 1.22760 1.38623 1.05896 0.99411 0.94194 1.27188 0.92075 0.97369 1.05228 1.70927 1.43596 1.10334 1.31746 0.82996 0.77322 0.74256 0.72088 1.20827 1.20178 1.19608 1.20892 0.96198 0.98289 0.98658 1.21019 0.99252 0.97650 0.95086 1.24169 0.96762 1.00076 0.91122 0.94495 0.90515 0.90665 0.88433 0.91100 0.86884 0.84070 0.87737 0.86447 0.85999 0.92865 0.86972 0.84923 0.90687 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.22 9.65 127.69 1.23 1.01 16 2 N -0.50 -9.80 6.56 -934.27 -6.13 -15.92 16 3 C 0.01 0.24 7.45 86.40 0.64 0.89 16 4 C -0.07 -1.47 4.16 -10.90 -0.05 -1.52 16 5 C -0.09 -2.69 5.30 -19.87 -0.11 -2.79 16 6 C -0.11 -3.44 9.71 22.27 0.22 -3.22 16 7 C -0.14 -5.70 9.67 22.27 0.22 -5.48 16 8 C -0.05 -2.28 4.94 -19.86 -0.10 -2.38 16 9 C 0.22 11.26 2.57 43.42 0.11 11.37 16 10 H 0.02 0.92 6.86 -2.39 -0.02 0.90 16 11 N -0.84 -38.73 9.02 -174.95 -1.58 -40.31 16 12 C -0.63 -34.43 8.57 25.60 0.22 -34.21 16 13 H 0.04 2.23 7.81 -2.91 -0.02 2.20 16 14 C -0.02 -1.02 5.46 84.65 0.46 -0.55 16 15 N -0.93 -54.80 13.58 21.45 0.29 -54.51 16 16 Si 1.11 49.33 29.90 68.60 2.05 51.38 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 20 C -0.12 -4.67 9.30 22.27 0.21 -4.46 16 21 C -0.11 -3.46 8.63 22.27 0.19 -3.26 16 22 C 0.01 0.14 7.34 86.40 0.63 0.78 16 23 H 0.04 0.59 7.62 -2.39 -0.02 0.58 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 1.45 7.53 -2.39 -0.02 1.43 16 28 H 0.11 2.25 8.10 -2.38 -0.02 2.23 16 29 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.10 4.26 8.04 -2.91 -0.02 4.24 16 31 H 0.33 15.54 8.50 -89.69 -0.76 14.78 16 32 H 0.33 14.11 7.39 -89.70 -0.66 13.45 16 33 H 0.26 15.50 6.30 -92.71 -0.58 14.92 16 34 H 0.11 4.22 6.69 -2.91 -0.02 4.20 16 35 H 0.13 3.35 6.65 -2.91 -0.02 3.33 16 36 H 0.08 1.52 5.78 -2.39 -0.01 1.50 16 37 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -61.85 300.98 -1.64 -63.49 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.16 Total: 39.70 kcal Atomic # 6 Polarization: -47.72 SS G_CDS: 3.88 Total: -43.83 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -7.41 Total: -110.74 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.05 Total: 51.38 kcal Total: -61.85 -1.64 -63.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.619 kcal (2) G-P(sol) polarization free energy of solvation -61.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds