Wall clock time and date at job start Mon Mar 30 2020 04:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47958 * 110.99893 * 2 1 4 4 C 1.53930 * 86.18102 * 222.41318 * 3 2 1 5 5 C 1.50700 * 113.73096 * 138.07697 * 4 3 2 6 6 C 1.38242 * 119.99847 * 120.00528 * 5 4 3 7 7 C 1.38231 * 119.99834 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00578 * 359.95583 * 7 6 5 9 9 C 1.50697 * 120.00295 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47074 * 19.99904 * 9 8 7 11 11 N 1.46901 * 109.47113 * 139.99732 * 9 8 7 12 12 C 1.50696 * 109.47217 * 260.00006 * 9 8 7 13 13 H 1.08005 * 119.99872 * 335.36970 * 12 9 8 14 14 C 1.37875 * 120.00040 * 155.37110 * 12 9 8 15 15 N 1.31516 * 119.99979 * 355.51745 * 14 12 9 16 16 Si 1.86803 * 120.00097 * 175.23898 * 14 12 9 17 17 H 1.48504 * 109.46855 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47022 * 120.00061 * 16 14 12 19 19 H 1.48496 * 109.47381 * 240.00275 * 16 14 12 20 20 C 1.38244 * 119.99403 * 0.27151 * 8 7 6 21 21 C 1.38234 * 120.00108 * 359.54483 * 20 8 7 22 22 C 1.47950 * 111.00094 * 260.64135 * 2 1 3 23 23 H 1.09005 * 109.46973 * 60.00225 * 1 2 3 24 24 H 1.09003 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47420 * 300.00165 * 1 2 3 26 26 H 1.09000 * 113.75758 * 108.09311 * 3 2 1 27 27 H 1.09001 * 113.76187 * 336.73680 * 3 2 1 28 28 H 1.08989 * 113.73621 * 269.25766 * 4 3 2 29 29 H 1.07994 * 119.99842 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.99715 * 179.97438 * 7 6 5 31 31 H 1.00905 * 111.00014 * 55.56633 * 11 9 8 32 32 H 1.00894 * 111.00302 * 179.51722 * 11 9 8 33 33 H 0.97001 * 119.99590 * 4.94141 * 15 14 12 34 34 H 1.08000 * 119.99622 * 179.72655 * 20 8 7 35 35 H 1.07996 * 119.99750 * 180.21191 * 21 20 8 36 36 H 1.09010 * 113.76313 * 23.26481 * 22 2 1 37 37 H 1.09006 * 113.76079 * 251.90273 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8793 -1.0359 5 6 3.2575 1.8423 -2.1707 6 6 4.5241 2.3491 -2.3947 7 6 4.7408 3.2329 -3.4352 8 6 3.6913 3.6092 -4.2524 9 6 3.9277 4.5723 -5.3872 10 1 4.9889 4.5875 -5.6356 11 7 3.1560 4.1442 -6.5616 12 6 3.4888 5.9533 -4.9737 13 1 2.7446 6.0745 -4.2004 14 6 4.0371 7.0622 -5.5826 15 7 5.0056 6.9187 -6.4607 16 14 3.3992 8.7678 -5.1661 17 1 2.3115 8.6576 -4.1610 18 1 4.5053 9.5878 -4.6099 19 1 2.8740 9.4138 -6.3957 20 6 2.4238 3.1061 -4.0255 21 6 2.2078 2.2193 -2.9873 22 6 1.9993 -0.2246 -1.3628 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4459 1.6803 0.9483 27 1 1.3010 2.1198 -0.3940 28 1 3.9458 0.5069 -0.5952 29 1 5.3439 2.0552 -1.7562 30 1 5.7301 3.6291 -3.6100 31 1 2.1766 4.0523 -6.3368 32 1 3.2915 4.7787 -7.3342 33 1 5.2853 6.0308 -6.7335 34 1 1.6030 3.4035 -4.6613 35 1 1.2183 1.8237 -2.8122 36 1 1.3010 0.0441 -2.1557 37 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260009492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:55 Heat of formation + Delta-G solvation = 49.339834 kcal Electronic energy + Delta-G solvation = -17400.678569 eV Core-core repulsion = 14757.138237 eV Total energy + Delta-G solvation = -2643.540333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37784 -38.33804 -35.03698 -32.13771 -30.99838 -30.29025 -28.70588 -26.17472 -25.67537 -24.13125 -22.42732 -22.13767 -20.24904 -19.18647 -17.10010 -16.62973 -15.84668 -15.27758 -14.93792 -14.53615 -14.16387 -13.85808 -13.59929 -13.22687 -13.00142 -12.86714 -12.54305 -12.30753 -12.19819 -11.82761 -11.50578 -11.15748 -10.91675 -10.80820 -10.59366 -10.33261 -10.24568 -9.70196 -9.58057 -8.95713 -8.60182 -8.34098 -7.99313 -7.28572 -6.48730 -4.29068 1.95038 1.99902 3.34954 3.36693 3.51537 3.84841 4.23666 4.41966 4.65496 4.78904 5.01196 5.16192 5.19804 5.22603 5.34445 5.38810 5.46359 5.53652 5.61261 5.68387 5.70532 5.72617 5.96052 6.14496 6.15499 6.19072 6.38186 6.51386 6.61222 6.88287 6.93214 7.07246 7.10081 7.48268 7.65231 7.89111 8.19495 8.43145 8.63229 8.67549 9.44224 10.83916 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.004947 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.178513 B = 5659.087937 C = 5862.474565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.489 5.489 3 C 0.009 3.991 4 C -0.066 4.066 5 C -0.110 4.110 6 C -0.111 4.111 7 C -0.123 4.123 8 C -0.016 4.016 9 C 0.217 3.783 10 H 0.053 0.947 11 N -0.852 5.852 12 C -0.623 4.623 13 H 0.050 0.950 14 C 0.028 3.972 15 N -0.906 5.906 16 Si 1.072 2.928 17 H -0.289 1.289 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.113 4.113 21 C -0.118 4.118 22 C 0.006 3.994 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.318 0.682 32 H 0.332 0.668 33 H 0.273 0.727 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 -10.747 9.417 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.120 4.120 4 C -0.085 4.085 5 C -0.110 4.110 6 C -0.129 4.129 7 C -0.141 4.141 8 C -0.017 4.017 9 C 0.109 3.891 10 H 0.070 0.930 11 N -0.380 5.380 12 C -0.663 4.663 13 H 0.069 0.931 14 C -0.178 4.178 15 N -0.542 5.542 16 Si 0.901 3.099 17 H -0.215 1.215 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.132 4.132 21 C -0.136 4.136 22 C -0.123 4.123 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.144 0.856 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.217 -10.274 9.693 15.057 hybrid contribution -1.149 -0.039 -0.157 1.160 sum -6.366 -10.312 9.536 15.421 Atomic orbital electron populations 1.22854 0.89924 1.02175 1.01092 1.68455 1.08923 1.18967 1.24731 1.24062 0.96948 0.91140 0.99852 1.21793 0.98335 0.94360 0.94030 1.19376 0.93943 1.00149 0.97539 1.20854 0.95945 0.98157 0.97969 1.20991 0.99154 0.98091 0.95872 1.20283 0.92357 0.92998 0.96060 1.18249 0.95381 0.90302 0.85205 0.92952 1.59652 1.12824 1.55560 1.09929 1.22581 1.27251 0.91777 1.24681 0.93130 1.25897 0.93634 1.04079 0.94201 1.70765 1.25185 1.27057 1.31176 0.83496 0.75828 0.74631 0.75983 1.21539 1.21135 1.21227 1.20843 0.97204 0.97552 0.97572 1.20766 0.97603 0.99047 0.96212 1.24158 0.97150 1.00024 0.90928 0.94665 0.91315 0.91473 0.89407 0.90891 0.88075 0.86963 0.86655 0.87082 0.85632 0.91580 0.86780 0.87612 0.90674 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.07 0.58 0.47 16 2 N -0.49 -5.69 6.56 -246.67 -1.62 -7.30 16 3 C 0.01 0.10 7.45 -2.77 -0.02 0.08 16 4 C -0.07 -0.84 4.16 -90.84 -0.38 -1.22 16 5 C -0.11 -1.70 5.30 -104.62 -0.55 -2.26 16 6 C -0.11 -1.86 9.71 -39.58 -0.38 -2.24 16 7 C -0.12 -2.43 9.67 -39.59 -0.38 -2.81 16 8 C -0.02 -0.35 4.93 -104.62 -0.52 -0.87 16 9 C 0.22 5.30 2.70 -70.02 -0.19 5.11 16 10 H 0.05 1.40 6.55 -51.93 -0.34 1.06 16 11 N -0.85 -19.05 9.12 -6.65 -0.06 -19.11 16 12 C -0.62 -16.71 8.57 -34.44 -0.30 -17.00 16 13 H 0.05 1.40 7.81 -52.48 -0.41 0.99 16 14 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 15 N -0.91 -26.03 13.63 55.43 0.76 -25.28 16 16 Si 1.07 24.52 29.91 -169.99 -5.08 19.43 16 17 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.11 -2.19 9.26 -39.58 -0.37 -2.56 16 21 C -0.12 -1.94 8.63 -39.58 -0.34 -2.29 16 22 C 0.01 0.07 7.34 -2.77 -0.02 0.05 16 23 H 0.03 0.34 7.62 -51.93 -0.40 -0.05 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.90 7.52 -51.93 -0.39 0.51 16 28 H 0.10 1.20 8.10 -51.94 -0.42 0.78 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 30 H 0.12 2.25 8.04 -52.49 -0.42 1.83 16 31 H 0.32 6.64 7.19 -39.29 -0.28 6.36 16 32 H 0.33 7.69 9.02 -39.29 -0.35 7.34 16 33 H 0.27 7.80 6.66 -40.82 -0.27 7.53 16 34 H 0.11 2.14 6.60 -52.49 -0.35 1.80 16 35 H 0.11 1.50 6.64 -52.49 -0.35 1.15 16 36 H 0.08 0.87 5.78 -51.92 -0.30 0.57 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -28.53 301.53 -9.62 -38.15 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -5.19 Total: 14.43 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -2.97 Total: -24.86 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.92 Total: -51.69 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.53 -9.62 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.490 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds