Wall clock time and date at job start Mon Mar 30 2020 04:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47958 * 110.99893 * 2 1 4 4 C 1.53930 * 86.18102 * 222.41318 * 3 2 1 5 5 C 1.50700 * 113.73096 * 138.07697 * 4 3 2 6 6 C 1.38242 * 119.99847 * 120.00528 * 5 4 3 7 7 C 1.38231 * 119.99834 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00578 * 359.95583 * 7 6 5 9 9 C 1.50697 * 120.00295 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47074 * 19.99904 * 9 8 7 11 11 N 1.46901 * 109.47113 * 139.99732 * 9 8 7 12 12 C 1.50696 * 109.47217 * 260.00006 * 9 8 7 13 13 H 1.08005 * 119.99872 * 335.36970 * 12 9 8 14 14 C 1.37875 * 120.00040 * 155.37110 * 12 9 8 15 15 N 1.31516 * 119.99979 * 355.51745 * 14 12 9 16 16 Si 1.86803 * 120.00097 * 175.23898 * 14 12 9 17 17 H 1.48504 * 109.46855 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47022 * 120.00061 * 16 14 12 19 19 H 1.48496 * 109.47381 * 240.00275 * 16 14 12 20 20 C 1.38244 * 119.99403 * 0.27151 * 8 7 6 21 21 C 1.38234 * 120.00108 * 359.54483 * 20 8 7 22 22 C 1.47950 * 111.00094 * 260.64135 * 2 1 3 23 23 H 1.09005 * 109.46973 * 60.00225 * 1 2 3 24 24 H 1.09003 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47420 * 300.00165 * 1 2 3 26 26 H 1.09000 * 113.75758 * 108.09311 * 3 2 1 27 27 H 1.09001 * 113.76187 * 336.73680 * 3 2 1 28 28 H 1.08989 * 113.73621 * 269.25766 * 4 3 2 29 29 H 1.07994 * 119.99842 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.99715 * 179.97438 * 7 6 5 31 31 H 1.00905 * 111.00014 * 55.56633 * 11 9 8 32 32 H 1.00894 * 111.00302 * 179.51722 * 11 9 8 33 33 H 0.97001 * 119.99590 * 4.94141 * 15 14 12 34 34 H 1.08000 * 119.99622 * 179.72655 * 20 8 7 35 35 H 1.07996 * 119.99750 * 180.21191 * 21 20 8 36 36 H 1.09010 * 113.76313 * 23.26481 * 22 2 1 37 37 H 1.09006 * 113.76079 * 251.90273 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0212 0.8793 -1.0359 5 6 3.2575 1.8423 -2.1707 6 6 4.5241 2.3491 -2.3947 7 6 4.7408 3.2329 -3.4352 8 6 3.6913 3.6092 -4.2524 9 6 3.9277 4.5723 -5.3872 10 1 4.9889 4.5875 -5.6356 11 7 3.1560 4.1442 -6.5616 12 6 3.4888 5.9533 -4.9737 13 1 2.7446 6.0745 -4.2004 14 6 4.0371 7.0622 -5.5826 15 7 5.0056 6.9187 -6.4607 16 14 3.3992 8.7678 -5.1661 17 1 2.3115 8.6576 -4.1610 18 1 4.5053 9.5878 -4.6099 19 1 2.8740 9.4138 -6.3957 20 6 2.4238 3.1061 -4.0255 21 6 2.2078 2.2193 -2.9873 22 6 1.9993 -0.2246 -1.3628 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4459 1.6803 0.9483 27 1 1.3010 2.1198 -0.3940 28 1 3.9458 0.5069 -0.5952 29 1 5.3439 2.0552 -1.7562 30 1 5.7301 3.6291 -3.6100 31 1 2.1766 4.0523 -6.3368 32 1 3.2915 4.7787 -7.3342 33 1 5.2853 6.0308 -6.7335 34 1 1.6030 3.4035 -4.6613 35 1 1.2183 1.8237 -2.8122 36 1 1.3010 0.0441 -2.1557 37 1 2.4460 -1.2089 -1.5036 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260009492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:55 Heat of formation + Delta-G solvation = 29.529928 kcal Electronic energy + Delta-G solvation = -17401.537591 eV Core-core repulsion = 14757.138237 eV Total energy + Delta-G solvation = -2644.399355 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.43254 -39.70444 -36.82919 -33.83814 -32.45187 -31.71829 -29.96376 -27.51425 -27.06449 -25.56055 -23.90014 -23.49198 -21.72523 -20.29026 -19.05065 -18.01427 -16.85537 -16.72099 -15.95974 -15.82247 -15.72507 -15.53791 -15.11414 -14.92600 -14.26444 -14.12289 -13.85511 -13.61416 -13.53525 -13.47400 -12.72763 -12.45149 -12.39633 -12.01922 -11.92747 -11.83044 -11.65810 -11.53027 -11.28669 -10.66556 -9.82741 -9.76894 -9.56733 -9.15632 -8.59430 -6.46040 0.52130 0.56906 1.48814 1.55764 1.73030 2.48471 2.87233 2.96450 3.11138 3.65086 3.78996 3.96741 4.03360 4.14249 4.18719 4.26841 4.31763 4.42756 4.53188 4.56311 4.62648 4.72416 4.77870 4.84342 4.94476 4.98417 5.13096 5.16888 5.31303 5.32182 5.59677 5.71847 5.74763 5.99173 6.03270 6.05031 6.18560 6.49157 6.52501 6.79233 7.34696 8.66716 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.004947 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.178513 B = 5659.087937 C = 5862.474565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.495 5.495 3 C 0.010 3.990 4 C -0.067 4.067 5 C -0.094 4.094 6 C -0.108 4.108 7 C -0.142 4.142 8 C -0.053 4.053 9 C 0.221 3.779 10 H 0.018 0.982 11 N -0.841 5.841 12 C -0.627 4.627 13 H 0.039 0.961 14 C -0.018 4.018 15 N -0.929 5.929 16 Si 1.117 2.883 17 H -0.278 1.278 18 H -0.280 1.280 19 H -0.277 1.277 20 C -0.124 4.124 21 C -0.111 4.111 22 C 0.009 3.991 23 H 0.036 0.964 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.142 0.858 30 H 0.104 0.896 31 H 0.328 0.672 32 H 0.326 0.674 33 H 0.261 0.739 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.076 0.924 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.412 -11.864 11.312 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 N -0.217 5.217 3 C -0.118 4.118 4 C -0.086 4.086 5 C -0.095 4.095 6 C -0.126 4.126 7 C -0.161 4.161 8 C -0.054 4.054 9 C 0.112 3.888 10 H 0.036 0.964 11 N -0.368 5.368 12 C -0.667 4.667 13 H 0.057 0.943 14 C -0.218 4.218 15 N -0.566 5.566 16 Si 0.940 3.060 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.202 1.202 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.120 4.120 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.132 0.868 29 H 0.159 0.841 30 H 0.122 0.878 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.072 0.928 34 H 0.131 0.869 35 H 0.151 0.849 36 H 0.094 0.906 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.575 -11.418 11.593 17.549 hybrid contribution -0.759 0.175 -0.674 1.030 sum -7.334 -11.243 10.919 17.304 Atomic orbital electron populations 1.22911 0.88819 1.02978 1.01523 1.68463 1.10106 1.18546 1.24615 1.24052 0.96535 0.91353 0.99881 1.21885 0.99487 0.94126 0.93108 1.19744 0.93005 0.99234 0.97497 1.21148 0.97569 0.96828 0.97034 1.21060 0.98393 0.99504 0.97125 1.20152 0.94212 0.94626 0.96364 1.18050 0.93516 0.90577 0.86698 0.96415 1.59557 1.13367 1.54865 1.09055 1.22793 1.26681 0.93336 1.23869 0.94286 1.27193 0.93258 1.07721 0.93677 1.70874 1.26682 1.26335 1.32755 0.82916 0.75768 0.70953 0.76406 1.20281 1.20626 1.20221 1.20901 0.96128 0.98438 0.98780 1.21019 0.99230 0.97733 0.94946 1.24170 0.96673 1.00064 0.91062 0.94504 0.90384 0.90808 0.88571 0.91296 0.86823 0.84070 0.87779 0.85985 0.86386 0.92843 0.86881 0.84865 0.90592 0.88452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.22 9.65 127.69 1.23 1.01 16 2 N -0.50 -9.81 6.56 -934.34 -6.13 -15.93 16 3 C 0.01 0.21 7.45 86.40 0.64 0.86 16 4 C -0.07 -1.46 4.16 -10.90 -0.05 -1.51 16 5 C -0.09 -2.68 5.30 -19.86 -0.11 -2.79 16 6 C -0.11 -3.43 9.71 22.27 0.22 -3.21 16 7 C -0.14 -5.71 9.67 22.27 0.22 -5.49 16 8 C -0.05 -2.33 4.93 -19.86 -0.10 -2.43 16 9 C 0.22 11.20 2.70 43.42 0.12 11.32 16 10 H 0.02 1.01 6.55 -2.39 -0.02 1.00 16 11 N -0.84 -38.69 9.12 -174.96 -1.60 -40.29 16 12 C -0.63 -34.45 8.57 25.60 0.22 -34.23 16 13 H 0.04 2.19 7.81 -2.91 -0.02 2.17 16 14 C -0.02 -1.01 5.46 84.65 0.46 -0.54 16 15 N -0.93 -54.92 13.63 21.45 0.29 -54.63 16 16 Si 1.12 49.52 29.91 68.60 2.05 51.57 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 20 C -0.12 -4.73 9.26 22.27 0.21 -4.52 16 21 C -0.11 -3.42 8.63 22.27 0.19 -3.23 16 22 C 0.01 0.17 7.34 86.41 0.63 0.80 16 23 H 0.04 0.60 7.62 -2.38 -0.02 0.58 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 1.47 7.52 -2.39 -0.02 1.46 16 28 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 29 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.10 4.27 8.04 -2.91 -0.02 4.24 16 31 H 0.33 13.90 7.19 -89.69 -0.64 13.25 16 32 H 0.33 15.60 9.02 -89.70 -0.81 14.79 16 33 H 0.26 15.64 6.66 -92.71 -0.62 15.03 16 34 H 0.11 4.21 6.60 -2.91 -0.02 4.19 16 35 H 0.13 3.34 6.64 -2.91 -0.02 3.32 16 36 H 0.08 1.48 5.78 -2.38 -0.01 1.47 16 37 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -61.96 301.53 -1.71 -63.67 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.22 Total: 39.58 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 3.89 Total: -43.97 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -7.43 Total: -110.85 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.05 Total: 51.57 kcal Total: -61.96 -1.71 -63.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.202 kcal (2) G-P(sol) polarization free energy of solvation -61.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds