Wall clock time and date at job start Mon Mar 30 2020 04:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.64038 * 2 1 4 4 C 1.53312 * 109.63757 * 120.63029 * 2 1 3 5 5 C 1.52791 * 108.52616 * 49.84792 * 4 2 1 6 6 C 1.50467 * 110.47479 * 51.00275 * 5 4 2 7 7 C 1.38771 * 118.53992 * 162.72438 * 6 5 4 8 8 N 1.31667 * 121.01648 * 179.88885 * 7 6 5 9 9 C 1.31894 * 121.64834 * 359.63658 * 8 7 6 10 10 C 1.38057 * 120.58482 * 0.30935 * 9 8 7 11 11 C 1.37837 * 122.53547 * 342.44981 * 6 5 4 12 12 C 1.50343 * 122.81407 * 0.43970 * 11 6 5 13 13 C 1.50693 * 109.31128 * 102.81367 * 12 11 6 14 14 H 1.07998 * 120.00368 * 145.91111 * 13 12 11 15 15 C 1.37879 * 119.99888 * 325.91457 * 13 12 11 16 16 N 1.31515 * 120.00150 * 8.53176 * 15 13 12 17 17 Si 1.86804 * 119.99895 * 188.53543 * 15 13 12 18 18 H 1.48504 * 109.47139 * 89.99876 * 17 15 13 19 19 H 1.48500 * 109.46984 * 209.99709 * 17 15 13 20 20 H 1.48496 * 109.46987 * 329.99766 * 17 15 13 21 21 C 1.52999 * 109.30922 * 222.41610 * 12 11 6 22 22 N 1.46898 * 109.47631 * 176.07095 * 21 12 11 23 23 H 1.08998 * 109.46910 * 180.41518 * 1 2 3 24 24 H 1.08994 * 109.46839 * 300.41597 * 1 2 3 25 25 H 1.09000 * 109.47061 * 60.41231 * 1 2 3 26 26 H 1.09009 * 109.62638 * 169.56032 * 4 2 1 27 27 H 1.08998 * 109.62791 * 289.94328 * 4 2 1 28 28 H 1.09001 * 109.30290 * 290.70190 * 5 4 2 29 29 H 1.09000 * 109.31126 * 171.31417 * 5 4 2 30 30 H 1.07996 * 119.49011 * 359.53754 * 7 6 5 31 31 H 1.07996 * 119.70342 * 180.28874 * 9 8 7 32 32 H 1.07996 * 120.33442 * 179.97438 * 10 9 8 33 33 H 0.96991 * 119.99928 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.47140 * 296.07329 * 21 12 11 35 35 H 1.09008 * 109.47322 * 56.06861 * 21 12 11 36 36 H 1.00899 * 111.00309 * 173.83281 * 22 21 12 37 37 H 1.00905 * 110.99584 * 297.79307 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0453 -0.7357 1.2425 5 6 1.3286 -2.0814 1.3419 6 6 1.4165 -2.8223 0.0352 7 6 1.1550 -4.1852 0.0269 8 7 1.2157 -4.8809 -1.0893 9 6 1.5188 -4.3153 -2.2416 10 6 1.7904 -2.9635 -2.3107 11 6 1.7407 -2.1985 -1.1504 12 6 2.0437 -0.7287 -1.2413 13 6 3.5337 -0.5331 -1.3531 14 1 3.9288 0.2792 -1.9451 15 6 4.3926 -1.3912 -0.6997 16 7 3.9244 -2.4744 -0.1192 17 14 6.2214 -1.0150 -0.6388 18 1 6.5189 -0.1980 0.5652 19 1 6.9864 -2.2862 -0.5757 20 1 6.6126 -0.2617 -1.8572 21 6 1.3627 -0.1477 -2.4821 22 7 1.5779 1.3049 -2.5239 23 1 -0.3633 -1.0276 0.0074 24 1 -0.3633 0.5203 0.8862 25 1 -0.3633 0.5074 -0.8937 26 1 3.1194 -0.8986 1.1524 27 1 1.8385 -0.1409 2.1322 28 1 0.2808 -1.9141 1.5913 29 1 1.7916 -2.6793 2.1269 30 1 0.9032 -4.6838 0.9512 31 1 1.5552 -4.9151 -3.1389 32 1 2.0386 -2.5047 -3.2564 33 1 4.5286 -3.0778 0.3408 34 1 1.7871 -0.6037 -3.3766 35 1 0.2935 -0.3556 -2.4407 36 1 1.2251 1.6981 -3.3835 37 1 1.1616 1.7552 -1.7225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:29 Heat of formation + Delta-G solvation = 38.533721 kcal Electronic energy + Delta-G solvation = -19437.962351 eV Core-core repulsion = 16793.953430 eV Total energy + Delta-G solvation = -2644.008921 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.94868 -37.09314 -33.90198 -32.61576 -30.85411 -30.48953 -28.29878 -27.05804 -24.14666 -23.93014 -22.43890 -21.46749 -19.86712 -17.57649 -16.70971 -15.74297 -15.27646 -14.65049 -14.38465 -14.11637 -13.82727 -13.71394 -13.19070 -12.66062 -12.48474 -12.17612 -11.73791 -11.62165 -11.52660 -11.05612 -10.94907 -10.89728 -10.71048 -10.57934 -9.96280 -9.81422 -9.48714 -9.29134 -8.90144 -8.47556 -8.12146 -7.99763 -7.78210 -7.61583 -5.74492 -4.06939 2.46798 2.82188 3.29623 3.38477 3.41335 4.41810 5.07271 5.18506 5.38414 5.58372 5.72068 5.84245 5.95410 6.02624 6.09020 6.20434 6.22444 6.24179 6.36887 6.42232 6.49275 6.62633 6.62994 6.73799 6.86793 6.99878 7.03845 7.07517 7.24514 7.27372 7.62362 7.66036 7.87497 7.95387 8.02221 8.08744 8.15865 8.36176 8.98485 9.21728 9.54445 10.97053 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.014134 C = 0.011253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.108045 B = 1980.603458 C = 2487.690350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.076 4.076 3 H 0.064 0.936 4 C -0.108 4.108 5 C -0.054 4.054 6 C -0.062 4.062 7 C 0.066 3.934 8 N -0.514 5.514 9 C 0.066 3.934 10 C -0.181 4.181 11 C 0.089 3.911 12 C 0.101 3.899 13 C -0.488 4.488 14 H 0.073 0.927 15 C 0.063 3.937 16 N -0.871 5.871 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.291 1.291 20 H -0.275 1.275 21 C 0.079 3.921 22 N -0.836 5.836 23 H 0.052 0.948 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.102 0.898 27 H 0.028 0.972 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.258 0.742 34 H 0.062 0.938 35 H 0.003 0.997 36 H 0.322 0.678 37 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 3.024 0.038 6.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.095 4.095 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.092 4.092 6 C -0.064 4.064 7 C -0.091 4.091 8 N -0.224 5.224 9 C -0.090 4.090 10 C -0.202 4.202 11 C 0.080 3.920 12 C 0.101 3.899 13 C -0.526 4.526 14 H 0.091 0.909 15 C -0.138 4.138 16 N -0.509 5.509 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.217 1.217 20 H -0.200 1.200 21 C -0.051 4.051 22 N -0.365 5.365 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.120 0.880 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.021 0.979 36 H 0.132 0.868 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.413 1.762 0.207 5.696 hybrid contribution 0.439 0.919 0.046 1.019 sum -4.974 2.681 0.253 5.656 Atomic orbital electron populations 1.22126 0.98544 1.01089 0.99441 1.21288 0.91676 0.99458 0.97103 0.91785 1.21597 1.04107 0.93679 0.95131 1.20102 0.98024 0.96686 0.94355 1.19849 0.97606 0.93992 0.94987 1.22176 1.00287 0.91225 0.95388 1.67307 1.16160 1.39903 0.99016 1.22081 0.99273 0.92683 0.95005 1.21725 1.04429 0.94902 0.99112 1.19501 0.85295 0.96386 0.90855 1.17287 0.95985 0.86949 0.89729 1.21026 0.88158 1.13314 1.30143 0.90886 1.25039 0.98435 0.94755 0.95620 1.70116 1.33586 1.11062 1.36109 0.86639 0.85811 0.77440 0.78420 1.20838 1.21705 1.20035 1.21966 0.95230 0.87642 1.00291 1.58616 1.67165 1.04793 1.05895 0.92874 0.94225 0.94156 0.88023 0.95276 0.93411 0.92673 0.85723 0.85554 0.87112 0.93002 0.91943 0.97864 0.86751 0.85397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 7.71 37.16 0.29 -2.35 16 2 C -0.08 -1.50 1.68 -90.54 -0.15 -1.65 16 3 H 0.06 1.29 7.14 -51.93 -0.37 0.92 16 4 C -0.11 -2.21 5.31 -26.68 -0.14 -2.35 16 5 C -0.05 -1.06 4.90 -28.10 -0.14 -1.20 16 6 C -0.06 -1.34 3.18 -104.68 -0.33 -1.68 16 7 C 0.07 1.42 10.80 -17.43 -0.19 1.23 16 8 N -0.51 -11.45 10.36 -13.19 -0.14 -11.59 16 9 C 0.07 1.41 11.19 -17.59 -0.20 1.21 16 10 C -0.18 -3.98 9.08 -39.34 -0.36 -4.34 16 11 C 0.09 1.98 2.35 -104.63 -0.25 1.74 16 12 C 0.10 2.17 0.20 -157.07 -0.03 2.14 16 13 C -0.49 -11.98 7.52 -34.44 -0.26 -12.24 16 14 H 0.07 1.89 7.59 -52.49 -0.40 1.49 16 15 C 0.06 1.57 4.00 -17.82 -0.07 1.50 16 16 N -0.87 -22.15 7.55 55.43 0.42 -21.73 16 17 Si 0.89 20.59 29.55 -169.99 -5.02 15.57 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.08 1.51 4.47 -3.83 -0.02 1.50 16 22 N -0.84 -14.24 8.97 -10.37 -0.09 -14.33 16 23 H 0.05 0.95 5.55 -51.93 -0.29 0.66 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.64 5.75 -51.93 -0.30 0.34 16 26 H 0.10 2.41 4.82 -51.92 -0.25 2.16 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.85 6.82 -51.93 -0.35 0.49 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 31 H 0.13 2.34 8.06 -52.49 -0.42 1.91 16 32 H 0.11 2.33 6.58 -52.49 -0.35 1.98 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.06 1.25 6.71 -51.93 -0.35 0.90 16 35 H 0.00 0.06 6.60 -51.92 -0.34 -0.28 16 36 H 0.32 4.59 9.08 -39.29 -0.36 4.24 16 37 H 0.33 5.34 6.59 -39.29 -0.26 5.08 16 LS Contribution 272.22 15.07 4.10 4.10 Total: -1.00 -26.59 272.22 -7.44 -34.03 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -4.86 Total: 10.44 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -1.85 Total: -16.49 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.19 Total: -47.65 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.59 -7.44 -34.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.559 kcal (2) G-P(sol) polarization free energy of solvation -26.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds