Wall clock time and date at job start Mon Mar 30 2020 04:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.64038 * 2 1 4 4 C 1.53312 * 109.63757 * 120.63029 * 2 1 3 5 5 C 1.52791 * 108.52616 * 49.84792 * 4 2 1 6 6 C 1.50467 * 110.47479 * 51.00275 * 5 4 2 7 7 C 1.38771 * 118.53992 * 162.72438 * 6 5 4 8 8 N 1.31667 * 121.01648 * 179.88885 * 7 6 5 9 9 C 1.31894 * 121.64834 * 359.63658 * 8 7 6 10 10 C 1.38057 * 120.58482 * 0.30935 * 9 8 7 11 11 C 1.37837 * 122.53547 * 342.44981 * 6 5 4 12 12 C 1.50343 * 122.81407 * 0.43970 * 11 6 5 13 13 C 1.50693 * 109.31128 * 102.81367 * 12 11 6 14 14 H 1.07998 * 120.00368 * 145.91111 * 13 12 11 15 15 C 1.37879 * 119.99888 * 325.91457 * 13 12 11 16 16 N 1.31515 * 120.00150 * 8.53176 * 15 13 12 17 17 Si 1.86804 * 119.99895 * 188.53543 * 15 13 12 18 18 H 1.48504 * 109.47139 * 89.99876 * 17 15 13 19 19 H 1.48500 * 109.46984 * 209.99709 * 17 15 13 20 20 H 1.48496 * 109.46987 * 329.99766 * 17 15 13 21 21 C 1.52999 * 109.30922 * 222.41610 * 12 11 6 22 22 N 1.46898 * 109.47631 * 176.07095 * 21 12 11 23 23 H 1.08998 * 109.46910 * 180.41518 * 1 2 3 24 24 H 1.08994 * 109.46839 * 300.41597 * 1 2 3 25 25 H 1.09000 * 109.47061 * 60.41231 * 1 2 3 26 26 H 1.09009 * 109.62638 * 169.56032 * 4 2 1 27 27 H 1.08998 * 109.62791 * 289.94328 * 4 2 1 28 28 H 1.09001 * 109.30290 * 290.70190 * 5 4 2 29 29 H 1.09000 * 109.31126 * 171.31417 * 5 4 2 30 30 H 1.07996 * 119.49011 * 359.53754 * 7 6 5 31 31 H 1.07996 * 119.70342 * 180.28874 * 9 8 7 32 32 H 1.07996 * 120.33442 * 179.97438 * 10 9 8 33 33 H 0.96991 * 119.99928 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.47140 * 296.07329 * 21 12 11 35 35 H 1.09008 * 109.47322 * 56.06861 * 21 12 11 36 36 H 1.00899 * 111.00309 * 173.83281 * 22 21 12 37 37 H 1.00905 * 110.99584 * 297.79307 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0453 -0.7357 1.2425 5 6 1.3286 -2.0814 1.3419 6 6 1.4165 -2.8223 0.0352 7 6 1.1550 -4.1852 0.0269 8 7 1.2157 -4.8809 -1.0893 9 6 1.5188 -4.3153 -2.2416 10 6 1.7904 -2.9635 -2.3107 11 6 1.7407 -2.1985 -1.1504 12 6 2.0437 -0.7287 -1.2413 13 6 3.5337 -0.5331 -1.3531 14 1 3.9288 0.2792 -1.9451 15 6 4.3926 -1.3912 -0.6997 16 7 3.9244 -2.4744 -0.1192 17 14 6.2214 -1.0150 -0.6388 18 1 6.5189 -0.1980 0.5652 19 1 6.9864 -2.2862 -0.5757 20 1 6.6126 -0.2617 -1.8572 21 6 1.3627 -0.1477 -2.4821 22 7 1.5779 1.3049 -2.5239 23 1 -0.3633 -1.0276 0.0074 24 1 -0.3633 0.5203 0.8862 25 1 -0.3633 0.5074 -0.8937 26 1 3.1194 -0.8986 1.1524 27 1 1.8385 -0.1409 2.1322 28 1 0.2808 -1.9141 1.5913 29 1 1.7916 -2.6793 2.1269 30 1 0.9032 -4.6838 0.9512 31 1 1.5552 -4.9151 -3.1389 32 1 2.0386 -2.5047 -3.2564 33 1 4.5286 -3.0778 0.3408 34 1 1.7871 -0.6037 -3.3766 35 1 0.2935 -0.3556 -2.4407 36 1 1.2251 1.6981 -3.3835 37 1 1.1616 1.7552 -1.7225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260060499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:29 Heat of formation + Delta-G solvation = 22.547997 kcal Electronic energy + Delta-G solvation = -19438.655544 eV Core-core repulsion = 16793.953430 eV Total energy + Delta-G solvation = -2644.702114 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.57527 -38.70925 -35.42489 -34.41299 -32.52984 -32.04255 -29.92878 -28.64211 -25.89217 -25.47190 -24.08533 -23.08356 -21.47649 -19.25360 -18.43129 -17.26271 -16.91099 -16.50594 -15.98909 -15.73892 -15.39291 -15.30206 -14.72665 -14.31084 -14.13546 -13.73848 -13.39144 -13.21933 -13.07540 -12.75693 -12.65457 -12.45464 -12.34828 -12.28052 -11.73771 -11.52874 -11.08402 -10.94462 -10.52976 -10.30558 -9.79321 -9.70634 -9.28587 -9.21128 -7.62373 -5.99226 0.80321 1.13346 1.41772 1.47852 1.52437 2.51425 3.27068 3.45508 3.98207 4.00413 4.16024 4.30473 4.43481 4.52977 4.56936 4.63278 4.70727 4.74501 4.85828 4.91518 4.96785 5.05529 5.13282 5.28841 5.30690 5.38131 5.45008 5.49823 5.65715 5.69757 5.90254 6.01923 6.06167 6.35066 6.42661 6.48832 6.65284 6.90165 7.04168 7.54670 7.61685 9.01369 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016944 B = 0.014134 C = 0.011253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.108045 B = 1980.603458 C = 2487.690350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 H 0.058 0.942 4 C -0.109 4.109 5 C -0.050 4.050 6 C -0.070 4.070 7 C 0.054 3.946 8 N -0.527 5.527 9 C 0.058 3.942 10 C -0.195 4.195 11 C 0.076 3.924 12 C 0.095 3.905 13 C -0.490 4.490 14 H 0.055 0.945 15 C 0.033 3.967 16 N -0.875 5.875 17 Si 0.927 3.073 18 H -0.282 1.282 19 H -0.300 1.300 20 H -0.280 1.280 21 C 0.087 3.913 22 N -0.843 5.843 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.048 0.952 35 H 0.014 0.986 36 H 0.339 0.661 37 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 3.644 0.346 8.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.147 4.147 5 C -0.088 4.088 6 C -0.072 4.072 7 C -0.102 4.102 8 N -0.237 5.237 9 C -0.098 4.098 10 C -0.216 4.216 11 C 0.067 3.933 12 C 0.095 3.905 13 C -0.529 4.529 14 H 0.073 0.927 15 C -0.166 4.166 16 N -0.513 5.513 17 Si 0.756 3.244 18 H -0.208 1.208 19 H -0.227 1.227 20 H -0.206 1.206 21 C -0.043 4.043 22 N -0.374 5.374 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.131 0.869 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.152 0.848 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.618 2.402 0.507 7.058 hybrid contribution 0.834 0.754 -0.081 1.127 sum -5.784 3.156 0.427 6.602 Atomic orbital electron populations 1.22005 0.96084 1.01021 1.01128 1.21171 0.93669 0.98573 0.95760 0.92330 1.21540 1.02094 0.94633 0.96392 1.20101 0.99331 0.95976 0.93345 1.20090 0.97222 0.94261 0.95611 1.22556 1.00095 0.91530 0.96012 1.67358 1.16633 1.40272 0.99474 1.22474 0.98761 0.92867 0.95730 1.21903 1.04869 0.95425 0.99397 1.19676 0.85558 0.96831 0.91233 1.17333 0.94373 0.87165 0.91655 1.21122 0.90197 1.12289 1.29257 0.92683 1.25376 1.00110 0.95056 0.96070 1.70246 1.33293 1.11199 1.36604 0.86052 0.83844 0.76535 0.77942 1.20806 1.22736 1.20562 1.21749 0.95390 0.88639 0.98565 1.58512 1.67761 1.03809 1.07275 0.93720 0.92050 0.93022 0.91422 0.93329 0.90986 0.92745 0.83827 0.83177 0.86885 0.94167 0.93321 0.96778 0.84828 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 7.71 71.98 0.55 -3.93 16 2 C -0.07 -2.73 1.68 -10.74 -0.02 -2.74 16 3 H 0.06 2.24 7.14 -2.39 -0.02 2.23 16 4 C -0.11 -4.28 5.31 30.63 0.16 -4.12 16 5 C -0.05 -1.87 4.90 29.71 0.15 -1.72 16 6 C -0.07 -2.92 3.18 -19.91 -0.06 -2.99 16 7 C 0.05 2.26 10.80 84.85 0.92 3.18 16 8 N -0.53 -22.89 10.36 -195.64 -2.03 -24.91 16 9 C 0.06 2.41 11.19 84.64 0.95 3.36 16 10 C -0.20 -8.47 9.08 22.43 0.20 -8.26 16 11 C 0.08 3.33 2.35 -19.87 -0.05 3.28 16 12 C 0.10 3.99 0.20 -53.84 -0.01 3.98 16 13 C -0.49 -23.94 7.52 25.60 0.19 -23.75 16 14 H 0.05 2.85 7.59 -2.91 -0.02 2.83 16 15 C 0.03 1.67 4.00 84.66 0.34 2.01 16 16 N -0.87 -44.50 7.55 21.45 0.16 -44.34 16 17 Si 0.93 42.58 29.55 68.60 2.03 44.60 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 C 0.09 3.22 4.47 86.30 0.39 3.60 16 22 N -0.84 -27.16 8.97 -186.71 -1.67 -28.83 16 23 H 0.04 1.46 5.55 -2.39 -0.01 1.45 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.05 1.47 5.75 -2.39 -0.01 1.45 16 26 H 0.07 3.16 4.82 -2.38 -0.01 3.15 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 2.34 6.82 -2.39 -0.02 2.32 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.14 5.29 8.06 -2.91 -0.02 5.27 16 31 H 0.15 5.34 8.06 -2.91 -0.02 5.32 16 32 H 0.11 4.73 6.58 -2.91 -0.02 4.71 16 33 H 0.25 12.92 8.31 -92.72 -0.77 12.15 16 34 H 0.05 1.91 6.71 -2.38 -0.02 1.89 16 35 H 0.01 0.49 6.60 -2.38 -0.02 0.48 16 36 H 0.34 8.97 9.08 -89.69 -0.81 8.15 16 37 H 0.34 10.12 6.59 -89.69 -0.59 9.53 16 Total: -1.00 -55.13 272.22 1.89 -53.24 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -0.30 Total: 28.34 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 3.71 Total: -28.10 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -3.54 Total: -98.09 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -55.13 1.89 -53.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.790 kcal (2) G-P(sol) polarization free energy of solvation -55.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds