Wall clock time and date at job start Mon Mar 30 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.80521 * 2 1 4 4 C 1.53315 * 109.63737 * 120.51216 * 2 1 3 5 5 C 1.52800 * 108.50829 * 49.86770 * 4 2 1 6 6 C 1.50465 * 110.46807 * 51.07245 * 5 4 2 7 7 C 1.38759 * 118.54529 * 162.47250 * 6 5 4 8 8 N 1.31676 * 121.01850 * 179.68045 * 7 6 5 9 9 C 1.31885 * 121.64509 * 0.04836 * 8 7 6 10 10 C 1.38054 * 120.58879 * 0.08528 * 9 8 7 11 11 C 1.37838 * 122.52658 * 342.32962 * 6 5 4 12 12 C 1.50341 * 122.81426 * 0.51895 * 11 6 5 13 13 C 1.50702 * 109.30268 * 222.42227 * 12 11 6 14 14 H 1.07995 * 120.00186 * 31.93283 * 13 12 11 15 15 C 1.37882 * 119.99784 * 211.92714 * 13 12 11 16 16 N 1.31520 * 120.00083 * 152.58128 * 15 13 12 17 17 Si 1.86801 * 120.00042 * 332.57626 * 15 13 12 18 18 H 1.48503 * 109.46692 * 95.14395 * 17 15 13 19 19 H 1.48498 * 109.47115 * 215.14145 * 17 15 13 20 20 H 1.48497 * 109.47082 * 335.14443 * 17 15 13 21 21 C 1.52995 * 109.30565 * 102.83185 * 12 11 6 22 22 N 1.46898 * 109.47443 * 65.00353 * 21 12 11 23 23 H 1.08997 * 109.47438 * 180.51500 * 1 2 3 24 24 H 1.09001 * 109.47373 * 300.51534 * 1 2 3 25 25 H 1.09000 * 109.47123 * 60.51081 * 1 2 3 26 26 H 1.09004 * 109.63149 * 169.57210 * 4 2 1 27 27 H 1.09003 * 109.63099 * 289.96446 * 4 2 1 28 28 H 1.08996 * 109.30764 * 171.38325 * 5 4 2 29 29 H 1.08998 * 109.30478 * 290.97939 * 5 4 2 30 30 H 1.07996 * 119.49202 * 359.67323 * 7 6 5 31 31 H 1.07999 * 119.70651 * 180.10901 * 9 8 7 32 32 H 1.08001 * 120.33795 * 179.89559 * 10 9 8 33 33 H 0.96991 * 119.99915 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.47604 * 185.00401 * 21 12 11 35 35 H 1.09000 * 109.47128 * 305.00240 * 21 12 11 36 36 H 1.00902 * 110.99750 * 173.15287 * 22 21 12 37 37 H 1.00899 * 111.00624 * 297.10896 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8993 1.0255 0.0000 4 6 2.0452 -0.7331 1.2440 5 6 1.3286 -2.0788 1.3455 6 6 1.4185 -2.8226 0.0407 7 6 1.1625 -4.1864 0.0358 8 7 1.2213 -4.8838 -1.0796 9 6 1.5249 -4.3204 -2.2328 10 6 1.7947 -2.9684 -2.3047 11 6 1.7419 -2.2007 -1.1462 12 6 2.0436 -0.7308 -1.2399 13 6 1.3719 -0.1614 -2.4629 14 1 0.4350 -0.5747 -2.8062 15 6 1.9535 0.8872 -3.1436 16 7 1.7251 1.0440 -4.4293 17 14 3.0655 2.0854 -2.2396 18 1 4.4806 1.6647 -2.4001 19 1 2.8872 3.4477 -2.8029 20 1 2.7129 2.0960 -0.7971 21 6 3.5561 -0.5312 -1.3545 22 7 4.0319 -1.1088 -2.6186 23 1 -0.3634 -1.0276 0.0092 24 1 -0.3634 0.5218 0.8853 25 1 -0.3633 0.5059 -0.8945 26 1 3.1193 -0.8961 1.1545 27 1 1.8381 -0.1367 2.1326 28 1 1.7907 -2.6747 2.1326 29 1 0.2796 -1.9110 1.5895 30 1 0.9113 -4.6835 0.9610 31 1 1.5625 -4.9220 -3.1289 32 1 2.0446 -2.5116 -3.2509 33 1 2.1345 1.7814 -4.9081 34 1 3.7847 0.5343 -1.3332 35 1 4.0522 -1.0259 -0.5195 36 1 5.0058 -0.8931 -2.7708 37 1 3.8742 -2.1051 -2.6431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:31 Heat of formation + Delta-G solvation = 51.496187 kcal Electronic energy + Delta-G solvation = -19241.841084 eV Core-core repulsion = 16598.394258 eV Total energy + Delta-G solvation = -2643.446826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43332 -37.49450 -34.59156 -32.05828 -31.24307 -31.15168 -29.01552 -27.09934 -24.88875 -23.46222 -22.96067 -21.69110 -20.70733 -18.15160 -16.49191 -15.91127 -15.51085 -15.31882 -14.85314 -14.50778 -14.18283 -13.62484 -13.21916 -13.03605 -12.92527 -12.56251 -12.41315 -11.98230 -11.83568 -11.39247 -11.06896 -10.79936 -10.74251 -10.62121 -10.24120 -9.80852 -9.74148 -9.22153 -9.09234 -8.56166 -8.49197 -8.23707 -8.13702 -7.57302 -6.07653 -3.89157 1.77865 2.06898 3.28756 3.33126 3.44552 4.46241 4.49690 5.01446 5.10893 5.27620 5.36635 5.38897 5.51068 5.64846 5.65464 5.86131 5.90898 6.02573 6.07486 6.17002 6.24967 6.28921 6.32545 6.45161 6.46853 6.57332 6.63261 6.78562 6.89045 6.96293 7.22096 7.30062 7.40944 7.52804 7.79224 8.04106 8.22937 8.54430 8.58836 9.01736 9.67310 11.05668 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024762 B = 0.011666 C = 0.009701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.472845 B = 2399.494859 C = 2885.695747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.077 0.923 4 C -0.123 4.123 5 C -0.069 4.069 6 C -0.143 4.143 7 C 0.079 3.921 8 N -0.502 5.502 9 C 0.065 3.935 10 C -0.143 4.143 11 C 0.011 3.989 12 C 0.090 3.910 13 C -0.508 4.508 14 H 0.070 0.930 15 C 0.118 3.882 16 N -0.867 5.867 17 Si 0.865 3.135 18 H -0.285 1.285 19 H -0.309 1.309 20 H -0.258 1.258 21 C 0.072 3.928 22 N -0.817 5.817 23 H 0.044 0.956 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.260 0.740 34 H 0.059 0.941 35 H 0.004 0.996 36 H 0.321 0.679 37 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.196 -4.544 8.836 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.095 0.905 4 C -0.160 4.160 5 C -0.107 4.107 6 C -0.145 4.145 7 C -0.080 4.080 8 N -0.211 5.211 9 C -0.089 4.089 10 C -0.162 4.162 11 C 0.003 3.997 12 C 0.088 3.912 13 C -0.544 4.544 14 H 0.088 0.912 15 C -0.087 4.087 16 N -0.502 5.502 17 Si 0.699 3.301 18 H -0.214 1.214 19 H -0.238 1.238 20 H -0.185 1.185 21 C -0.059 4.059 22 N -0.347 5.347 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.173 0.827 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.022 0.978 36 H 0.132 0.868 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.492 -4.895 8.286 9.739 hybrid contribution 1.516 1.086 0.962 2.098 sum 3.009 -3.809 9.248 10.444 Atomic orbital electron populations 1.21696 0.95384 1.00777 1.00762 1.21752 0.96483 1.00039 0.93759 0.90492 1.21749 0.99585 0.95658 0.99023 1.20312 1.01116 0.95775 0.93453 1.20580 1.02830 0.94912 0.96186 1.22513 0.98446 0.90885 0.96188 1.67474 1.14167 1.40378 0.99065 1.22639 0.97658 0.93374 0.95276 1.22564 0.99011 0.93675 1.00995 1.20319 0.91179 0.97304 0.90865 1.17466 0.91229 0.87166 0.95327 1.20195 1.08432 1.17838 1.07950 0.91162 1.24597 0.93558 0.97209 0.93347 1.70093 1.43582 1.29660 1.06825 0.87542 0.81330 0.80156 0.81117 1.21362 1.23766 1.18539 1.22000 0.96753 0.98195 0.88906 1.58611 1.22183 1.17499 1.36401 0.93659 0.95145 0.90965 0.92530 0.92660 0.91983 0.90753 0.84291 0.83844 0.82707 0.92997 0.92323 0.97810 0.86793 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.07 37.16 0.30 -2.14 16 2 C -0.10 -1.98 2.11 -90.55 -0.19 -2.17 16 3 H 0.08 1.61 4.75 -51.93 -0.25 1.36 16 4 C -0.12 -1.99 5.59 -26.67 -0.15 -2.14 16 5 C -0.07 -1.05 5.11 -28.10 -0.14 -1.19 16 6 C -0.14 -2.53 5.02 -104.69 -0.53 -3.05 16 7 C 0.08 1.33 10.80 -17.43 -0.19 1.15 16 8 N -0.50 -9.15 10.36 -13.19 -0.14 -9.28 16 9 C 0.06 1.16 11.19 -17.60 -0.20 0.97 16 10 C -0.14 -2.80 7.19 -39.34 -0.28 -3.08 16 11 C 0.01 0.23 4.16 -104.63 -0.44 -0.21 16 12 C 0.09 1.89 0.06 -157.08 -0.01 1.88 16 13 C -0.51 -12.82 5.19 -34.44 -0.18 -13.00 16 14 H 0.07 2.00 8.04 -52.49 -0.42 1.58 16 15 C 0.12 3.14 4.63 -17.82 -0.08 3.06 16 16 N -0.87 -24.82 13.96 55.43 0.77 -24.04 16 17 Si 0.86 20.56 23.46 -169.99 -3.99 16.57 16 18 H -0.29 -6.69 6.75 56.52 0.38 -6.31 16 19 H -0.31 -7.66 7.11 56.52 0.40 -7.26 16 20 H -0.26 -5.73 4.63 56.52 0.26 -5.47 16 21 C 0.07 1.48 4.46 -3.83 -0.02 1.46 16 22 N -0.82 -16.35 7.71 -10.37 -0.08 -16.43 16 23 H 0.04 0.85 5.55 -51.93 -0.29 0.56 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 1.52 6.98 -51.93 -0.36 1.16 16 26 H 0.06 0.92 6.40 -51.93 -0.33 0.59 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.07 1.08 6.80 -51.93 -0.35 0.73 16 30 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.14 2.19 8.06 -52.49 -0.42 1.76 16 32 H 0.16 3.30 6.51 -52.49 -0.34 2.96 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.06 1.29 2.35 -51.93 -0.12 1.17 16 35 H 0.00 0.08 6.70 -51.93 -0.35 -0.27 16 36 H 0.32 5.75 9.08 -39.29 -0.36 5.40 16 37 H 0.33 6.21 6.24 -39.29 -0.25 5.96 16 LS Contribution 265.79 15.07 4.01 4.01 Total: -1.00 -28.24 265.79 -6.35 -34.59 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -4.83 Total: 13.07 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -2.10 Total: -18.48 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.56 Total: -49.75 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -3.99 Total: 16.57 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.24 -6.35 -34.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.088 kcal (2) G-P(sol) polarization free energy of solvation -28.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds