Wall clock time and date at job start Mon Mar 30 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.80521 * 2 1 4 4 C 1.53315 * 109.63737 * 120.51216 * 2 1 3 5 5 C 1.52800 * 108.50829 * 49.86770 * 4 2 1 6 6 C 1.50465 * 110.46807 * 51.07245 * 5 4 2 7 7 C 1.38759 * 118.54529 * 162.47250 * 6 5 4 8 8 N 1.31676 * 121.01850 * 179.68045 * 7 6 5 9 9 C 1.31885 * 121.64509 * 0.04836 * 8 7 6 10 10 C 1.38054 * 120.58879 * 0.08528 * 9 8 7 11 11 C 1.37838 * 122.52658 * 342.32962 * 6 5 4 12 12 C 1.50341 * 122.81426 * 0.51895 * 11 6 5 13 13 C 1.50702 * 109.30268 * 222.42227 * 12 11 6 14 14 H 1.07995 * 120.00186 * 31.93283 * 13 12 11 15 15 C 1.37882 * 119.99784 * 211.92714 * 13 12 11 16 16 N 1.31520 * 120.00083 * 152.58128 * 15 13 12 17 17 Si 1.86801 * 120.00042 * 332.57626 * 15 13 12 18 18 H 1.48503 * 109.46692 * 95.14395 * 17 15 13 19 19 H 1.48498 * 109.47115 * 215.14145 * 17 15 13 20 20 H 1.48497 * 109.47082 * 335.14443 * 17 15 13 21 21 C 1.52995 * 109.30565 * 102.83185 * 12 11 6 22 22 N 1.46898 * 109.47443 * 65.00353 * 21 12 11 23 23 H 1.08997 * 109.47438 * 180.51500 * 1 2 3 24 24 H 1.09001 * 109.47373 * 300.51534 * 1 2 3 25 25 H 1.09000 * 109.47123 * 60.51081 * 1 2 3 26 26 H 1.09004 * 109.63149 * 169.57210 * 4 2 1 27 27 H 1.09003 * 109.63099 * 289.96446 * 4 2 1 28 28 H 1.08996 * 109.30764 * 171.38325 * 5 4 2 29 29 H 1.08998 * 109.30478 * 290.97939 * 5 4 2 30 30 H 1.07996 * 119.49202 * 359.67323 * 7 6 5 31 31 H 1.07999 * 119.70651 * 180.10901 * 9 8 7 32 32 H 1.08001 * 120.33795 * 179.89559 * 10 9 8 33 33 H 0.96991 * 119.99915 * 180.02562 * 16 15 13 34 34 H 1.09001 * 109.47604 * 185.00401 * 21 12 11 35 35 H 1.09000 * 109.47128 * 305.00240 * 21 12 11 36 36 H 1.00902 * 110.99750 * 173.15287 * 22 21 12 37 37 H 1.00899 * 111.00624 * 297.10896 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8993 1.0255 0.0000 4 6 2.0452 -0.7331 1.2440 5 6 1.3286 -2.0788 1.3455 6 6 1.4185 -2.8226 0.0407 7 6 1.1625 -4.1864 0.0358 8 7 1.2213 -4.8838 -1.0796 9 6 1.5249 -4.3204 -2.2328 10 6 1.7947 -2.9684 -2.3047 11 6 1.7419 -2.2007 -1.1462 12 6 2.0436 -0.7308 -1.2399 13 6 1.3719 -0.1614 -2.4629 14 1 0.4350 -0.5747 -2.8062 15 6 1.9535 0.8872 -3.1436 16 7 1.7251 1.0440 -4.4293 17 14 3.0655 2.0854 -2.2396 18 1 4.4806 1.6647 -2.4001 19 1 2.8872 3.4477 -2.8029 20 1 2.7129 2.0960 -0.7971 21 6 3.5561 -0.5312 -1.3545 22 7 4.0319 -1.1088 -2.6186 23 1 -0.3634 -1.0276 0.0092 24 1 -0.3634 0.5218 0.8853 25 1 -0.3633 0.5059 -0.8945 26 1 3.1193 -0.8961 1.1545 27 1 1.8381 -0.1367 2.1326 28 1 1.7907 -2.6747 2.1326 29 1 0.2796 -1.9110 1.5895 30 1 0.9113 -4.6835 0.9610 31 1 1.5625 -4.9220 -3.1289 32 1 2.0446 -2.5116 -3.2509 33 1 2.1345 1.7814 -4.9081 34 1 3.7847 0.5343 -1.3332 35 1 4.0522 -1.0259 -0.5195 36 1 5.0058 -0.8931 -2.7708 37 1 3.8742 -2.1051 -2.6431 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260060503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:31 Heat of formation + Delta-G solvation = 31.588183 kcal Electronic energy + Delta-G solvation = -19242.704360 eV Core-core repulsion = 16598.394258 eV Total energy + Delta-G solvation = -2644.310102 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.88801 -38.98321 -36.09323 -33.98558 -32.76509 -32.61844 -30.49896 -28.61960 -26.64965 -24.98012 -24.43589 -23.15510 -22.28616 -19.64073 -18.26926 -17.42917 -17.26437 -16.78046 -16.28315 -16.10802 -15.61989 -15.19201 -14.82303 -14.59995 -14.47339 -14.17073 -14.08589 -13.39518 -13.19904 -12.88357 -12.53214 -12.48191 -12.37172 -12.18561 -11.98349 -11.49678 -11.28817 -10.98473 -10.66930 -10.14178 -10.06192 -9.98375 -9.58301 -9.16836 -8.14649 -5.95287 0.38831 0.60407 1.35417 1.42225 1.51096 2.50183 3.05514 3.21226 3.72817 3.83874 3.90697 3.98198 4.17947 4.23013 4.28926 4.34966 4.52008 4.57644 4.59734 4.76129 4.85077 4.85925 5.02863 5.06313 5.11706 5.12334 5.22931 5.33479 5.40772 5.47042 5.66159 5.75746 5.89081 5.98420 6.07757 6.41797 6.54110 6.75369 6.95841 7.19287 7.61990 9.02738 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024762 B = 0.011666 C = 0.009701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.472845 B = 2399.494859 C = 2885.695747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 H 0.063 0.937 4 C -0.117 4.117 5 C -0.067 4.067 6 C -0.142 4.142 7 C 0.082 3.918 8 N -0.511 5.511 9 C 0.066 3.934 10 C -0.159 4.159 11 C -0.009 4.009 12 C 0.088 3.912 13 C -0.487 4.487 14 H 0.022 0.978 15 C 0.071 3.929 16 N -0.920 5.920 17 Si 0.913 3.087 18 H -0.279 1.279 19 H -0.327 1.327 20 H -0.229 1.229 21 C 0.071 3.929 22 N -0.834 5.834 23 H 0.045 0.955 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.177 0.823 31 H 0.164 0.836 32 H 0.127 0.873 33 H 0.256 0.744 34 H 0.048 0.952 35 H 0.027 0.973 36 H 0.332 0.668 37 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 -5.676 12.486 13.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.124 4.124 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.105 4.105 6 C -0.144 4.144 7 C -0.077 4.077 8 N -0.220 5.220 9 C -0.089 4.089 10 C -0.179 4.179 11 C -0.017 4.017 12 C 0.087 3.913 13 C -0.524 4.524 14 H 0.040 0.960 15 C -0.129 4.129 16 N -0.558 5.558 17 Si 0.746 3.254 18 H -0.207 1.207 19 H -0.258 1.258 20 H -0.155 1.155 21 C -0.059 4.059 22 N -0.366 5.366 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.194 0.806 31 H 0.181 0.819 32 H 0.145 0.855 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.144 0.856 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.081 -6.043 11.971 13.570 hybrid contribution 1.246 1.326 -0.195 1.830 sum 3.328 -4.716 11.776 13.114 Atomic orbital electron populations 1.21613 0.95258 1.00710 1.00441 1.21678 0.96627 0.99373 0.94761 0.91879 1.21707 0.99619 0.96175 0.97928 1.20413 1.02107 0.95259 0.92693 1.20870 1.01568 0.95499 0.96477 1.23111 0.96792 0.90730 0.97030 1.67574 1.14336 1.40626 0.99415 1.22864 0.96947 0.92765 0.96274 1.22366 1.00736 0.94691 1.00095 1.20255 0.92834 0.96490 0.92107 1.17416 0.91387 0.88263 0.94245 1.20248 1.06386 1.16674 1.09086 0.95979 1.25193 0.95365 0.98782 0.93596 1.70227 1.46374 1.30613 1.08613 0.86766 0.80015 0.77029 0.81554 1.20668 1.25753 1.15459 1.21966 0.96437 0.97653 0.89824 1.58554 1.23183 1.18178 1.36678 0.93618 0.92138 0.94530 0.92344 0.89792 0.88473 0.89551 0.80596 0.81914 0.85544 0.93542 0.93461 0.95526 0.85584 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.44 8.07 71.98 0.58 -3.86 16 2 C -0.11 -3.86 2.11 -10.75 -0.02 -3.89 16 3 H 0.06 2.47 4.75 -2.39 -0.01 2.46 16 4 C -0.12 -3.24 5.59 30.63 0.17 -3.07 16 5 C -0.07 -1.69 5.11 29.71 0.15 -1.54 16 6 C -0.14 -4.55 5.02 -19.91 -0.10 -4.64 16 7 C 0.08 2.47 10.80 84.84 0.92 3.38 16 8 N -0.51 -17.29 10.36 -195.64 -2.03 -19.32 16 9 C 0.07 2.29 11.19 84.64 0.95 3.23 16 10 C -0.16 -6.28 7.19 22.43 0.16 -6.12 16 11 C -0.01 -0.34 4.16 -19.87 -0.08 -0.42 16 12 C 0.09 3.67 0.06 -53.85 0.00 3.66 16 13 C -0.49 -25.46 5.19 25.60 0.13 -25.33 16 14 H 0.02 1.34 8.04 -2.91 -0.02 1.31 16 15 C 0.07 3.90 4.63 84.65 0.39 4.29 16 16 N -0.92 -55.46 13.96 21.45 0.30 -55.16 16 17 Si 0.91 42.91 23.46 68.60 1.61 44.52 16 18 H -0.28 -12.68 6.75 99.48 0.67 -12.01 16 19 H -0.33 -16.24 7.11 99.48 0.71 -15.54 16 20 H -0.23 -9.61 4.63 99.48 0.46 -9.15 16 21 C 0.07 2.84 4.46 86.30 0.39 3.23 16 22 N -0.83 -33.30 7.71 -186.73 -1.44 -34.74 16 23 H 0.04 1.62 5.55 -2.39 -0.01 1.60 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.04 1.55 6.98 -2.39 -0.02 1.53 16 26 H 0.06 1.62 6.40 -2.39 -0.02 1.60 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 28 H 0.10 1.84 8.13 -2.39 -0.02 1.82 16 29 H 0.09 2.02 6.80 -2.39 -0.02 2.01 16 30 H 0.18 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.16 4.84 8.06 -2.91 -0.02 4.82 16 32 H 0.13 5.68 6.51 -2.91 -0.02 5.66 16 33 H 0.26 14.84 8.31 -92.72 -0.77 14.07 16 34 H 0.05 2.00 2.35 -2.39 -0.01 1.99 16 35 H 0.03 0.95 6.70 -2.39 -0.02 0.93 16 36 H 0.33 11.72 9.08 -89.69 -0.81 10.91 16 37 H 0.34 12.73 6.24 -89.69 -0.56 12.17 16 Total: -1.00 -63.53 265.79 1.53 -62.01 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: -0.55 Total: 33.76 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 3.63 Total: -31.07 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -3.17 Total: -109.22 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.61 Total: 44.52 kcal Total: -63.53 1.53 -62.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.594 kcal (2) G-P(sol) polarization free energy of solvation -63.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds