Wall clock time and date at job start Mon Mar 30 2020 04:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.63577 * 2 1 4 4 C 1.53317 * 109.64320 * 239.36623 * 2 1 3 5 5 C 1.52798 * 108.51847 * 170.45688 * 4 2 1 6 6 C 1.50464 * 110.47736 * 50.99609 * 5 4 2 7 7 C 1.38757 * 118.54250 * 162.56767 * 6 5 4 8 8 N 1.31670 * 121.01945 * 179.75732 * 7 6 5 9 9 C 1.31889 * 121.65053 * 359.97438 * 8 7 6 10 10 C 1.38068 * 120.58239 * 0.12811 * 9 8 7 11 11 C 1.37850 * 122.53298 * 342.49874 * 6 5 4 12 12 C 1.50341 * 122.81610 * 0.36673 * 11 6 5 13 13 C 1.50700 * 109.31026 * 102.85347 * 12 11 6 14 14 H 1.07998 * 119.99786 * 337.17736 * 13 12 11 15 15 C 1.37874 * 119.99954 * 157.17643 * 13 12 11 16 16 N 1.31515 * 119.99885 * 124.69251 * 15 13 12 17 17 Si 1.86806 * 119.99869 * 304.68389 * 15 13 12 18 18 H 1.48496 * 109.46671 * 84.20752 * 17 15 13 19 19 H 1.48488 * 109.47036 * 324.20512 * 17 15 13 20 20 H 1.48503 * 109.46797 * 204.20535 * 17 15 13 21 21 C 1.52996 * 109.14888 * 222.36529 * 12 11 6 22 22 N 1.46901 * 109.47707 * 37.80128 * 21 12 11 23 23 H 1.08998 * 109.46840 * 299.58683 * 1 2 3 24 24 H 1.08995 * 109.46910 * 59.58647 * 1 2 3 25 25 H 1.08996 * 109.46522 * 179.58646 * 1 2 3 26 26 H 1.08997 * 109.62914 * 290.17168 * 4 2 1 27 27 H 1.08999 * 109.62484 * 50.55710 * 4 2 1 28 28 H 1.09001 * 109.29949 * 171.29972 * 5 4 2 29 29 H 1.08993 * 109.30316 * 290.89060 * 5 4 2 30 30 H 1.07999 * 119.49133 * 359.72911 * 7 6 5 31 31 H 1.07996 * 119.71274 * 180.10566 * 9 8 7 32 32 H 1.08001 * 120.33495 * 179.97438 * 10 9 8 33 33 H 0.97001 * 119.99688 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.46996 * 157.80690 * 21 12 11 35 35 H 1.09008 * 109.46902 * 277.79988 * 21 12 11 36 36 H 1.00899 * 110.99608 * 75.39012 * 22 21 12 37 37 H 1.00895 * 111.00356 * 199.34663 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8963 1.0266 0.0000 4 6 2.0454 -0.7358 -1.2424 5 6 3.5542 -0.5172 -1.3448 6 6 4.2240 -0.8488 -0.0389 7 6 5.5942 -1.0674 -0.0332 8 7 6.2306 -1.3560 1.0827 9 6 5.5979 -1.4489 2.2362 10 6 4.2340 -1.2464 2.3075 11 6 3.5291 -0.9418 1.1480 12 6 2.0438 -0.7286 1.2414 13 6 1.3549 -2.0641 1.3560 14 1 1.8472 -2.9577 1.0019 15 6 0.0963 -2.1450 1.9130 16 7 -0.8868 -2.7003 1.2386 17 14 -0.2126 -1.4660 3.6257 18 1 -0.4816 -0.0081 3.5389 19 1 0.9839 -1.6990 4.4737 20 1 -1.3856 -2.1511 4.2256 21 6 1.7340 0.1087 2.4838 22 7 2.7753 1.1302 2.6582 23 1 -0.3633 0.5074 0.8937 24 1 -0.3633 0.5202 -0.8862 25 1 -0.3632 -1.0276 -0.0074 26 1 1.8351 -1.8013 -1.1505 27 1 1.5542 -0.3410 -2.1318 28 1 3.9584 -1.1567 -2.1295 29 1 3.7512 0.5257 -1.5927 30 1 6.1471 -1.0002 -0.9585 31 1 6.1513 -1.6857 3.1328 32 1 3.7198 -1.3238 3.2541 33 1 -1.7723 -2.7569 1.6304 34 1 0.7655 0.5940 2.3627 35 1 1.7091 -0.5381 3.3609 36 1 2.6590 1.8818 1.9952 37 1 2.7834 1.4805 3.6043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260060505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:33 Heat of formation + Delta-G solvation = 46.104960 kcal Electronic energy + Delta-G solvation = -19167.737514 eV Core-core repulsion = 16524.056907 eV Total energy + Delta-G solvation = -2643.680607 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.07114 -37.35456 -34.23256 -32.88144 -31.25832 -31.04404 -28.86396 -27.00329 -24.51901 -23.72599 -22.71093 -21.20370 -20.45688 -18.52683 -16.29270 -15.94711 -15.64371 -15.25560 -14.73462 -14.32331 -14.07467 -13.49829 -13.23511 -12.86211 -12.72342 -12.67396 -12.37520 -11.89018 -11.64958 -11.14781 -11.06408 -10.91771 -10.78637 -10.33552 -10.14490 -9.86265 -9.66084 -9.60880 -9.01651 -8.58441 -8.37661 -8.07094 -7.88635 -7.75893 -6.66074 -4.05204 2.00356 2.35023 3.10073 3.29912 3.34375 4.24399 4.61066 4.73358 5.18430 5.22234 5.44825 5.61179 5.76082 5.78589 5.84309 5.93595 6.12178 6.20485 6.21649 6.40269 6.44799 6.51802 6.59362 6.61876 6.71177 6.73997 6.88404 7.01983 7.10589 7.23884 7.31697 7.46735 7.60572 7.65063 7.76751 7.92808 7.95398 8.34351 8.77739 8.86545 9.32603 10.44242 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023710 B = 0.011492 C = 0.009661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.633656 B = 2435.789740 C = 2897.486709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 H 0.032 0.968 4 C -0.104 4.104 5 C -0.069 4.069 6 C -0.143 4.143 7 C 0.080 3.920 8 N -0.507 5.507 9 C 0.064 3.936 10 C -0.127 4.127 11 C 0.049 3.951 12 C 0.107 3.893 13 C -0.571 4.571 14 H 0.075 0.925 15 C 0.135 3.865 16 N -0.800 5.800 17 Si 0.814 3.186 18 H -0.276 1.276 19 H -0.272 1.272 20 H -0.300 1.300 21 C 0.042 3.958 22 N -0.845 5.845 23 H 0.031 0.969 24 H 0.022 0.978 25 H 0.113 0.887 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.120 0.880 33 H 0.268 0.732 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.331 0.669 37 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 5.708 -1.032 7.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.089 4.089 3 H 0.050 0.950 4 C -0.142 4.142 5 C -0.106 4.106 6 C -0.146 4.146 7 C -0.079 4.079 8 N -0.216 5.216 9 C -0.090 4.090 10 C -0.147 4.147 11 C 0.041 3.959 12 C 0.105 3.895 13 C -0.604 4.604 14 H 0.093 0.907 15 C -0.076 4.076 16 N -0.428 5.428 17 Si 0.641 3.359 18 H -0.203 1.203 19 H -0.198 1.198 20 H -0.228 1.228 21 C -0.087 4.087 22 N -0.372 5.372 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.132 0.868 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.138 0.862 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.143 0.857 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.326 4.870 -1.293 7.331 hybrid contribution -1.991 1.168 1.538 2.774 sum 3.334 6.038 0.245 6.902 Atomic orbital electron populations 1.22124 0.95629 1.05798 0.97582 1.21220 0.95677 0.95832 0.96208 0.94951 1.21492 0.92817 1.02882 0.96988 1.20300 0.96591 1.00174 0.93564 1.20465 0.94525 1.03419 0.96149 1.22442 0.91459 0.98040 0.95967 1.67427 1.40698 1.14526 0.98997 1.22385 0.92384 0.98990 0.95230 1.21856 0.94335 0.99188 0.99347 1.19909 0.96632 0.88521 0.90827 1.17345 0.87136 0.94519 0.90522 1.20107 1.00603 0.92240 1.47441 0.90733 1.24716 0.94431 0.91863 0.96603 1.70583 1.00466 1.37654 1.34130 0.88454 0.76670 0.79399 0.91426 1.20273 1.19830 1.22815 1.22662 0.91908 0.93522 1.00623 1.58903 1.52827 1.17466 1.07999 0.95033 0.95939 0.86833 0.90066 0.93437 0.91940 0.92049 0.84535 0.84501 0.86160 0.92175 0.94682 0.91193 0.85746 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 7.97 37.16 0.30 -2.96 16 2 C -0.07 -1.43 1.94 -90.54 -0.18 -1.60 16 3 H 0.03 0.62 7.71 -51.93 -0.40 0.22 16 4 C -0.10 -1.98 5.23 -26.67 -0.14 -2.12 16 5 C -0.07 -1.17 5.72 -28.10 -0.16 -1.33 16 6 C -0.14 -2.77 5.73 -104.69 -0.60 -3.37 16 7 C 0.08 1.47 10.80 -17.43 -0.19 1.28 16 8 N -0.51 -9.86 10.36 -13.19 -0.14 -9.99 16 9 C 0.06 1.21 11.19 -17.59 -0.20 1.02 16 10 C -0.13 -2.58 8.23 -39.34 -0.32 -2.90 16 11 C 0.05 1.03 3.95 -104.63 -0.41 0.61 16 12 C 0.11 2.31 0.28 -157.07 -0.04 2.26 16 13 C -0.57 -14.28 6.56 -34.44 -0.23 -14.51 16 14 H 0.07 2.09 8.04 -52.49 -0.42 1.66 16 15 C 0.14 3.39 3.50 -17.82 -0.06 3.33 16 16 N -0.80 -20.63 12.44 55.43 0.69 -19.94 16 17 Si 0.81 18.86 24.31 -169.99 -4.13 14.73 16 18 H -0.28 -6.23 5.98 56.52 0.34 -5.89 16 19 H -0.27 -6.31 6.60 56.52 0.37 -5.94 16 20 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 21 C 0.04 0.87 3.14 -3.83 -0.01 0.86 16 22 N -0.84 -14.58 7.67 -10.37 -0.08 -14.66 16 23 H 0.03 0.66 6.45 -51.93 -0.33 0.33 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.11 2.70 4.70 -51.93 -0.24 2.45 16 26 H 0.08 1.76 7.21 -51.93 -0.37 1.39 16 27 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.14 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.14 2.19 8.06 -52.49 -0.42 1.76 16 32 H 0.12 2.45 7.06 -52.49 -0.37 2.08 16 33 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.04 0.75 4.22 -51.93 -0.22 0.53 16 35 H 0.07 1.55 3.48 -51.92 -0.18 1.36 16 36 H 0.33 5.30 8.70 -39.29 -0.34 4.96 16 37 H 0.33 4.92 9.08 -39.29 -0.36 4.57 16 LS Contribution 272.30 15.07 4.10 4.10 Total: -1.00 -26.30 272.30 -6.81 -33.10 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.01 Total: 12.09 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.25 Total: -19.43 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.47 Total: -44.59 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.13 Total: 14.73 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -26.30 -6.81 -33.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.209 kcal (2) G-P(sol) polarization free energy of solvation -26.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds