Wall clock time and date at job start Mon Mar 30 2020 04:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.63577 * 2 1 4 4 C 1.53317 * 109.64320 * 239.36623 * 2 1 3 5 5 C 1.52798 * 108.51847 * 170.45688 * 4 2 1 6 6 C 1.50464 * 110.47736 * 50.99609 * 5 4 2 7 7 C 1.38757 * 118.54250 * 162.56767 * 6 5 4 8 8 N 1.31670 * 121.01945 * 179.75732 * 7 6 5 9 9 C 1.31889 * 121.65053 * 359.97438 * 8 7 6 10 10 C 1.38068 * 120.58239 * 0.12811 * 9 8 7 11 11 C 1.37850 * 122.53298 * 342.49874 * 6 5 4 12 12 C 1.50341 * 122.81610 * 0.36673 * 11 6 5 13 13 C 1.50700 * 109.31026 * 102.85347 * 12 11 6 14 14 H 1.07998 * 119.99786 * 337.17736 * 13 12 11 15 15 C 1.37874 * 119.99954 * 157.17643 * 13 12 11 16 16 N 1.31515 * 119.99885 * 124.69251 * 15 13 12 17 17 Si 1.86806 * 119.99869 * 304.68389 * 15 13 12 18 18 H 1.48496 * 109.46671 * 84.20752 * 17 15 13 19 19 H 1.48488 * 109.47036 * 324.20512 * 17 15 13 20 20 H 1.48503 * 109.46797 * 204.20535 * 17 15 13 21 21 C 1.52996 * 109.14888 * 222.36529 * 12 11 6 22 22 N 1.46901 * 109.47707 * 37.80128 * 21 12 11 23 23 H 1.08998 * 109.46840 * 299.58683 * 1 2 3 24 24 H 1.08995 * 109.46910 * 59.58647 * 1 2 3 25 25 H 1.08996 * 109.46522 * 179.58646 * 1 2 3 26 26 H 1.08997 * 109.62914 * 290.17168 * 4 2 1 27 27 H 1.08999 * 109.62484 * 50.55710 * 4 2 1 28 28 H 1.09001 * 109.29949 * 171.29972 * 5 4 2 29 29 H 1.08993 * 109.30316 * 290.89060 * 5 4 2 30 30 H 1.07999 * 119.49133 * 359.72911 * 7 6 5 31 31 H 1.07996 * 119.71274 * 180.10566 * 9 8 7 32 32 H 1.08001 * 120.33495 * 179.97438 * 10 9 8 33 33 H 0.97001 * 119.99688 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.46996 * 157.80690 * 21 12 11 35 35 H 1.09008 * 109.46902 * 277.79988 * 21 12 11 36 36 H 1.00899 * 110.99608 * 75.39012 * 22 21 12 37 37 H 1.00895 * 111.00356 * 199.34663 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8963 1.0266 0.0000 4 6 2.0454 -0.7358 -1.2424 5 6 3.5542 -0.5172 -1.3448 6 6 4.2240 -0.8488 -0.0389 7 6 5.5942 -1.0674 -0.0332 8 7 6.2306 -1.3560 1.0827 9 6 5.5979 -1.4489 2.2362 10 6 4.2340 -1.2464 2.3075 11 6 3.5291 -0.9418 1.1480 12 6 2.0438 -0.7286 1.2414 13 6 1.3549 -2.0641 1.3560 14 1 1.8472 -2.9577 1.0019 15 6 0.0963 -2.1450 1.9130 16 7 -0.8868 -2.7003 1.2386 17 14 -0.2126 -1.4660 3.6257 18 1 -0.4816 -0.0081 3.5389 19 1 0.9839 -1.6990 4.4737 20 1 -1.3856 -2.1511 4.2256 21 6 1.7340 0.1087 2.4838 22 7 2.7753 1.1302 2.6582 23 1 -0.3633 0.5074 0.8937 24 1 -0.3633 0.5202 -0.8862 25 1 -0.3632 -1.0276 -0.0074 26 1 1.8351 -1.8013 -1.1505 27 1 1.5542 -0.3410 -2.1318 28 1 3.9584 -1.1567 -2.1295 29 1 3.7512 0.5257 -1.5927 30 1 6.1471 -1.0002 -0.9585 31 1 6.1513 -1.6857 3.1328 32 1 3.7198 -1.3238 3.2541 33 1 -1.7723 -2.7569 1.6304 34 1 0.7655 0.5940 2.3627 35 1 1.7091 -0.5381 3.3609 36 1 2.6590 1.8818 1.9952 37 1 2.7834 1.4805 3.6043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260060505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:32 Heat of formation + Delta-G solvation = 28.714417 kcal Electronic energy + Delta-G solvation = -19168.491625 eV Core-core repulsion = 16524.056907 eV Total energy + Delta-G solvation = -2644.434718 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.59202 -38.92152 -35.72573 -34.70303 -32.82997 -32.56662 -30.41054 -28.63963 -26.18951 -25.41570 -24.20472 -22.74509 -21.98989 -20.20783 -18.02733 -17.47293 -17.18974 -16.96338 -16.37258 -15.80050 -15.61199 -15.08218 -14.80574 -14.57979 -14.30312 -14.20993 -13.93790 -13.56120 -13.21299 -12.78376 -12.68309 -12.61073 -12.39561 -11.95086 -11.92363 -11.49698 -11.44114 -11.21017 -10.64587 -10.18936 -9.96292 -9.61499 -9.46846 -9.34179 -8.61149 -6.00057 0.53730 0.82318 1.21996 1.41597 1.43273 2.30131 2.69903 3.23299 3.77779 3.83129 3.99656 4.12212 4.21983 4.30143 4.34490 4.44095 4.62429 4.65981 4.69499 4.88979 4.93008 5.00711 5.05818 5.10157 5.16170 5.22386 5.34845 5.45377 5.53333 5.58433 5.69685 5.74812 6.08024 6.13425 6.18248 6.31477 6.47281 6.66998 6.87035 7.30950 7.36805 8.52761 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.023710 B = 0.011492 C = 0.009661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.633656 B = 2435.789740 C = 2897.486709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 H 0.050 0.950 4 C -0.101 4.101 5 C -0.064 4.064 6 C -0.154 4.154 7 C 0.080 3.920 8 N -0.517 5.517 9 C 0.063 3.937 10 C -0.141 4.141 11 C 0.028 3.972 12 C 0.106 3.894 13 C -0.575 4.575 14 H 0.031 0.969 15 C 0.109 3.891 16 N -0.829 5.829 17 Si 0.859 3.141 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.308 1.308 21 C 0.051 3.949 22 N -0.838 5.838 23 H 0.025 0.975 24 H 0.042 0.958 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.169 0.831 31 H 0.163 0.837 32 H 0.112 0.888 33 H 0.271 0.729 34 H 0.026 0.974 35 H 0.053 0.947 36 H 0.341 0.659 37 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 7.472 -1.484 9.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.139 4.139 5 C -0.101 4.101 6 C -0.156 4.156 7 C -0.079 4.079 8 N -0.226 5.226 9 C -0.091 4.091 10 C -0.161 4.161 11 C 0.020 3.980 12 C 0.105 3.895 13 C -0.608 4.608 14 H 0.049 0.951 15 C -0.101 4.101 16 N -0.459 5.459 17 Si 0.687 3.313 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.237 1.237 21 C -0.079 4.079 22 N -0.368 5.368 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.187 0.813 31 H 0.180 0.820 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.154 0.846 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.653 6.655 -1.729 9.567 hybrid contribution -2.372 0.563 1.627 2.931 sum 4.281 7.218 -0.103 8.392 Atomic orbital electron populations 1.22038 0.96419 1.04099 0.98276 1.21194 0.95007 0.96613 0.96095 0.93211 1.21416 0.94805 1.00391 0.97263 1.20330 0.94650 1.02138 0.93025 1.20769 0.95169 1.03139 0.96487 1.22938 0.91341 0.96697 0.96877 1.67522 1.40915 1.14793 0.99408 1.22749 0.92015 0.98117 0.96173 1.21873 0.95083 1.00203 0.98967 1.19974 0.96266 0.89820 0.91955 1.17272 0.87685 0.92961 0.91628 1.20083 1.00780 0.92585 1.47378 0.95061 1.25068 0.94328 0.92514 0.98143 1.70620 1.00844 1.39421 1.35001 0.87704 0.75904 0.79575 0.88136 1.18866 1.20017 1.23705 1.22369 0.92285 0.93902 0.99321 1.58763 1.51263 1.17397 1.09375 0.95631 0.93868 0.89746 0.93792 0.91394 0.89848 0.89536 0.81343 0.81983 0.87039 0.91932 0.95608 0.92872 0.84581 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.26 7.97 71.98 0.57 -5.69 16 2 C -0.07 -2.75 1.94 -10.74 -0.02 -2.77 16 3 H 0.05 1.78 7.71 -2.39 -0.02 1.76 16 4 C -0.10 -3.70 5.23 30.63 0.16 -3.54 16 5 C -0.06 -1.99 5.72 29.71 0.17 -1.82 16 6 C -0.15 -5.61 5.73 -19.91 -0.11 -5.73 16 7 C 0.08 2.72 10.80 84.84 0.92 3.64 16 8 N -0.52 -18.84 10.36 -195.64 -2.03 -20.87 16 9 C 0.06 2.28 11.19 84.64 0.95 3.23 16 10 C -0.14 -5.60 8.23 22.43 0.18 -5.42 16 11 C 0.03 1.14 3.95 -19.87 -0.08 1.06 16 12 C 0.11 4.56 0.28 -53.84 -0.01 4.54 16 13 C -0.57 -29.57 6.56 25.60 0.17 -29.41 16 14 H 0.03 1.85 8.04 -2.91 -0.02 1.83 16 15 C 0.11 5.61 3.50 84.65 0.30 5.90 16 16 N -0.83 -44.02 12.44 21.45 0.27 -43.75 16 17 Si 0.86 39.42 24.31 68.60 1.67 41.09 16 18 H -0.26 -11.42 5.98 99.48 0.59 -10.83 16 19 H -0.27 -12.53 6.60 99.48 0.66 -11.87 16 20 H -0.31 -14.45 7.11 99.48 0.71 -13.74 16 21 C 0.05 2.06 3.14 86.30 0.27 2.33 16 22 N -0.84 -27.24 7.67 -186.71 -1.43 -28.67 16 23 H 0.02 1.04 6.45 -2.39 -0.02 1.03 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 4.06 4.70 -2.39 -0.01 4.05 16 26 H 0.04 1.92 7.21 -2.39 -0.02 1.91 16 27 H 0.07 2.17 8.13 -2.39 -0.02 2.15 16 28 H 0.08 2.26 8.13 -2.39 -0.02 2.24 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.17 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.16 4.83 8.06 -2.91 -0.02 4.81 16 32 H 0.11 4.54 7.06 -2.91 -0.02 4.52 16 33 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 34 H 0.03 1.08 4.22 -2.38 -0.01 1.07 16 35 H 0.05 2.32 3.48 -2.38 -0.01 2.31 16 36 H 0.34 10.01 8.70 -89.69 -0.78 9.23 16 37 H 0.34 9.51 9.08 -89.70 -0.81 8.70 16 Total: -1.00 -56.91 272.30 1.28 -55.64 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.66 Total: 30.25 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 3.46 Total: -33.68 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -3.19 Total: -93.30 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.67 Total: 41.09 kcal Total: -56.91 1.28 -55.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260060505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.351 kcal (2) G-P(sol) polarization free energy of solvation -56.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds