Wall clock time and date at job start Mon Mar 30 2020 04:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.48060 * 110.99482 * 69.87950 * 3 2 1 5 5 C 1.51187 * 105.67270 * 146.96722 * 4 3 2 6 6 C 1.38172 * 131.77711 * 162.49038 * 5 4 3 7 7 C 1.38219 * 120.03341 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.99744 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99703 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47407 * 160.00031 * 9 8 7 11 11 N 1.46894 * 109.47305 * 39.99987 * 9 8 7 12 12 C 1.50699 * 109.47223 * 279.99596 * 9 8 7 13 13 H 1.08004 * 120.00028 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00097 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00266 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99848 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47515 * 90.00323 * 16 14 12 18 18 H 1.48506 * 109.46823 * 209.99877 * 16 14 12 19 19 H 1.48505 * 109.47224 * 329.99649 * 16 14 12 20 20 C 1.38222 * 120.00604 * 0.02562 * 8 7 6 21 21 C 1.38179 * 120.03041 * 359.97438 * 20 8 7 22 22 C 1.48055 * 111.00141 * 184.88028 * 3 2 1 23 23 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 28 28 H 1.09004 * 110.20450 * 266.01240 * 4 3 2 29 29 H 1.08991 * 110.21114 * 27.91045 * 4 3 2 30 30 H 1.08006 * 119.98274 * 359.97438 * 6 5 4 31 31 H 1.07998 * 120.00346 * 180.02562 * 7 6 5 32 32 H 1.00899 * 110.99750 * 299.99772 * 11 9 8 33 33 H 1.00905 * 111.00398 * 63.95199 * 11 9 8 34 34 H 0.97002 * 120.00371 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.98709 * 179.97438 * 20 8 7 36 36 H 1.09003 * 110.20708 * 332.09251 * 22 3 2 37 37 H 1.09001 * 110.20727 * 93.98862 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7481 2.0436 1.2979 5 6 2.8973 3.0010 1.5184 6 6 3.0424 4.0865 2.3609 7 6 4.2223 4.8066 2.3644 8 6 5.2581 4.4404 1.5251 9 6 6.5442 5.2258 1.5286 10 1 7.3421 4.6184 1.1014 11 7 6.8916 5.5903 2.9085 12 6 6.3709 6.4771 0.7069 13 1 5.4239 6.6833 0.2302 14 6 7.4208 7.3594 0.5646 15 7 8.5738 7.1087 1.1454 16 14 7.2057 8.9108 -0.4534 17 1 6.7237 10.0121 0.4183 18 1 8.5081 9.2913 -1.0570 19 1 6.2145 8.6624 -1.5310 20 6 5.1137 3.3546 0.6820 21 6 3.9345 2.6343 0.6779 22 6 3.4949 1.4262 -0.1176 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 0.8061 2.5902 1.2530 29 1 1.7166 1.3029 2.0968 30 1 2.2333 4.3730 3.0163 31 1 4.3353 5.6547 3.0234 32 1 6.1671 6.1543 3.3268 33 1 7.0763 4.7685 3.4641 34 1 9.3126 7.7291 1.0450 35 1 5.9229 3.0691 0.0262 36 1 3.9316 0.5199 0.3020 37 1 3.7865 1.5367 -1.1621 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260082408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:34 Heat of formation + Delta-G solvation = 37.086624 kcal Electronic energy + Delta-G solvation = -17410.481203 eV Core-core repulsion = 14766.409532 eV Total energy + Delta-G solvation = -2644.071672 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11617 -37.38585 -34.46701 -32.29128 -31.36823 -30.68174 -28.48589 -27.46347 -25.74206 -23.98602 -22.29137 -21.37127 -20.84061 -19.34155 -16.44304 -16.11744 -15.78840 -15.09018 -15.00584 -14.49667 -14.18897 -13.86060 -13.62855 -13.35450 -12.83434 -12.63593 -12.37033 -12.30428 -11.95156 -11.73257 -11.48099 -11.21654 -11.12434 -10.94544 -10.80912 -10.56006 -10.27211 -9.79645 -9.24365 -8.75628 -8.42813 -8.21056 -7.73298 -7.07083 -5.87027 -4.01921 1.87934 1.95524 3.35016 3.41736 3.45709 3.90955 4.26883 4.52424 4.61729 4.75886 4.95111 5.09466 5.29969 5.36719 5.39780 5.43760 5.52500 5.58853 5.65381 5.76072 5.79043 5.88530 6.01049 6.09460 6.20732 6.32628 6.50761 6.57440 6.62238 6.96124 7.02382 7.08222 7.10859 7.57943 7.59684 7.91851 8.19187 8.63143 9.00395 9.15228 9.66780 11.17247 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038325 B = 0.004915 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.419966 B = 5695.329096 C = 5875.875507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.040 3.960 3 N -0.506 5.506 4 C 0.085 3.915 5 C -0.136 4.136 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.065 4.065 9 C 0.253 3.747 10 H 0.047 0.953 11 N -0.809 5.809 12 C -0.530 4.530 13 H 0.054 0.946 14 C 0.084 3.916 15 N -0.847 5.847 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.100 4.100 21 C -0.108 4.108 22 C 0.080 3.920 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.317 0.683 33 H 0.298 0.702 34 H 0.256 0.744 35 H 0.117 0.883 36 H 0.055 0.945 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.272 -12.387 0.781 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 N -0.230 5.230 4 C -0.043 4.043 5 C -0.136 4.136 6 C -0.119 4.119 7 C -0.138 4.138 8 C -0.068 4.068 9 C 0.143 3.857 10 H 0.065 0.935 11 N -0.335 5.335 12 C -0.569 4.569 13 H 0.072 0.928 14 C -0.123 4.123 15 N -0.482 5.482 16 Si 0.712 3.288 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.048 4.048 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.135 0.865 36 H 0.073 0.927 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.708 -11.696 0.031 16.549 hybrid contribution -0.609 -0.033 0.359 0.708 sum -12.317 -11.728 0.390 17.012 Atomic orbital electron populations 1.21745 0.94607 1.01433 1.02660 1.22323 0.96497 0.89073 1.00986 1.65257 1.11162 1.15657 1.30894 1.21504 0.97412 0.95280 0.90063 1.20265 0.96060 0.97939 0.99374 1.20335 0.97749 0.94877 0.98967 1.20907 0.92865 0.99521 1.00468 1.21740 0.99495 0.93356 0.92210 1.18218 0.86052 0.93549 0.87831 0.93545 1.59217 1.49301 1.21614 1.03321 1.20826 0.98291 1.05824 1.31912 0.92814 1.24943 0.95182 0.97485 0.94682 1.70103 1.01837 1.35506 1.40766 0.86747 0.77405 0.84033 0.80620 1.20705 1.21271 1.19981 1.20424 0.96206 0.95497 0.99782 1.20403 0.94994 0.97232 0.98235 1.21539 0.87537 0.95211 1.00476 0.92704 0.92334 0.91740 0.94585 0.90532 0.89894 0.92987 0.87084 0.86142 0.86996 0.89203 0.93446 0.86462 0.92693 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.97 37.16 0.37 -0.90 16 2 C 0.04 0.40 5.35 -3.82 -0.02 0.38 16 3 N -0.51 -6.74 5.47 -234.91 -1.29 -8.02 16 4 C 0.08 1.14 5.70 -4.10 -0.02 1.12 16 5 C -0.14 -2.25 6.26 -104.33 -0.65 -2.90 16 6 C -0.10 -1.70 10.04 -39.61 -0.40 -2.10 16 7 C -0.12 -2.28 9.29 -39.58 -0.37 -2.64 16 8 C -0.07 -1.38 4.88 -104.62 -0.51 -1.89 16 9 C 0.25 6.22 2.85 -70.02 -0.20 6.02 16 10 H 0.05 1.25 8.00 -51.93 -0.42 0.83 16 11 N -0.81 -18.78 8.36 -6.65 -0.06 -18.84 16 12 C -0.53 -14.55 8.70 -34.44 -0.30 -14.85 16 13 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 14 C 0.08 2.34 5.39 -17.82 -0.10 2.24 16 15 N -0.85 -24.61 12.77 55.43 0.71 -23.90 16 16 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 C -0.10 -1.95 9.66 -39.61 -0.38 -2.33 16 21 C -0.11 -1.87 6.26 -104.33 -0.65 -2.52 16 22 C 0.08 1.13 6.61 -4.11 -0.03 1.10 16 23 H 0.05 0.48 7.52 -51.93 -0.39 0.09 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.36 7.82 -51.93 -0.41 -0.05 16 27 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.64 7.61 -51.93 -0.40 0.24 16 30 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 31 H 0.12 2.22 6.66 -52.49 -0.35 1.87 16 32 H 0.32 7.00 7.34 -39.29 -0.29 6.71 16 33 H 0.30 6.19 9.06 -39.29 -0.36 5.84 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.12 2.20 8.04 -52.48 -0.42 1.78 16 36 H 0.06 0.70 7.81 -51.93 -0.41 0.30 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -29.81 303.12 -9.85 -39.67 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.51 Total: 9.39 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -3.26 Total: -19.27 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.63 Total: -50.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.81 -9.85 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.755 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds