Wall clock time and date at job start Mon Mar 30 2020 04:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.48060 * 110.99482 * 69.87950 * 3 2 1 5 5 C 1.51187 * 105.67270 * 146.96722 * 4 3 2 6 6 C 1.38172 * 131.77711 * 162.49038 * 5 4 3 7 7 C 1.38219 * 120.03341 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.99744 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99703 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47407 * 160.00031 * 9 8 7 11 11 N 1.46894 * 109.47305 * 39.99987 * 9 8 7 12 12 C 1.50699 * 109.47223 * 279.99596 * 9 8 7 13 13 H 1.08004 * 120.00028 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00097 * 179.97438 * 12 9 8 15 15 N 1.31509 * 120.00266 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99848 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47515 * 90.00323 * 16 14 12 18 18 H 1.48506 * 109.46823 * 209.99877 * 16 14 12 19 19 H 1.48505 * 109.47224 * 329.99649 * 16 14 12 20 20 C 1.38222 * 120.00604 * 0.02562 * 8 7 6 21 21 C 1.38179 * 120.03041 * 359.97438 * 20 8 7 22 22 C 1.48055 * 111.00141 * 184.88028 * 3 2 1 23 23 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 28 28 H 1.09004 * 110.20450 * 266.01240 * 4 3 2 29 29 H 1.08991 * 110.21114 * 27.91045 * 4 3 2 30 30 H 1.08006 * 119.98274 * 359.97438 * 6 5 4 31 31 H 1.07998 * 120.00346 * 180.02562 * 7 6 5 32 32 H 1.00899 * 110.99750 * 299.99772 * 11 9 8 33 33 H 1.00905 * 111.00398 * 63.95199 * 11 9 8 34 34 H 0.97002 * 120.00371 * 179.97438 * 15 14 12 35 35 H 1.08004 * 119.98709 * 179.97438 * 20 8 7 36 36 H 1.09003 * 110.20708 * 332.09251 * 22 3 2 37 37 H 1.09001 * 110.20727 * 93.98862 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7481 2.0436 1.2979 5 6 2.8973 3.0010 1.5184 6 6 3.0424 4.0865 2.3609 7 6 4.2223 4.8066 2.3644 8 6 5.2581 4.4404 1.5251 9 6 6.5442 5.2258 1.5286 10 1 7.3421 4.6184 1.1014 11 7 6.8916 5.5903 2.9085 12 6 6.3709 6.4771 0.7069 13 1 5.4239 6.6833 0.2302 14 6 7.4208 7.3594 0.5646 15 7 8.5738 7.1087 1.1454 16 14 7.2057 8.9108 -0.4534 17 1 6.7237 10.0121 0.4183 18 1 8.5081 9.2913 -1.0570 19 1 6.2145 8.6624 -1.5310 20 6 5.1137 3.3546 0.6820 21 6 3.9345 2.6343 0.6779 22 6 3.4949 1.4262 -0.1176 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 0.8061 2.5902 1.2530 29 1 1.7166 1.3029 2.0968 30 1 2.2333 4.3730 3.0163 31 1 4.3353 5.6547 3.0234 32 1 6.1671 6.1543 3.3268 33 1 7.0763 4.7685 3.4641 34 1 9.3126 7.7291 1.0450 35 1 5.9229 3.0691 0.0262 36 1 3.9316 0.5199 0.3020 37 1 3.7865 1.5367 -1.1621 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260082408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:33 Heat of formation + Delta-G solvation = 16.893638 kcal Electronic energy + Delta-G solvation = -17411.356837 eV Core-core repulsion = 14766.409532 eV Total energy + Delta-G solvation = -2644.947305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.37319 -38.71369 -36.11143 -33.86702 -32.86722 -32.11840 -29.66534 -28.84632 -27.63660 -25.13009 -23.98484 -22.56450 -21.87601 -20.91624 -18.48568 -17.34317 -16.95817 -16.73554 -16.33536 -16.06515 -15.70790 -15.17986 -14.95349 -14.54968 -14.24482 -13.99977 -13.93064 -13.49244 -13.19897 -13.08252 -12.77355 -12.71256 -12.59915 -12.36171 -12.27619 -11.87278 -11.78667 -11.53952 -11.24007 -10.56610 -9.90226 -9.62924 -9.14227 -8.85104 -7.99330 -6.21173 0.45824 0.52119 1.42179 1.43159 1.53032 2.45109 2.86646 2.95082 3.23999 3.45610 3.58968 4.11544 4.15296 4.22903 4.28493 4.42104 4.44922 4.46422 4.56542 4.63644 4.63787 4.72140 4.83429 4.95187 5.06287 5.07865 5.18390 5.33692 5.35274 5.49449 5.53252 5.73780 5.82233 5.91202 6.04332 6.09269 6.21181 6.64025 7.08798 7.24962 7.51266 9.03901 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038325 B = 0.004915 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.419966 B = 5695.329096 C = 5875.875507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.037 3.963 3 N -0.517 5.517 4 C 0.089 3.911 5 C -0.135 4.135 6 C -0.097 4.097 7 C -0.128 4.128 8 C -0.091 4.091 9 C 0.259 3.741 10 H 0.010 0.990 11 N -0.818 5.818 12 C -0.543 4.543 13 H 0.042 0.958 14 C 0.036 3.964 15 N -0.879 5.879 16 Si 0.948 3.052 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.274 1.274 20 C -0.118 4.118 21 C -0.114 4.114 22 C 0.083 3.917 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.324 0.676 33 H 0.311 0.689 34 H 0.256 0.744 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.637 -13.331 0.818 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 N -0.241 5.241 4 C -0.038 4.038 5 C -0.135 4.135 6 C -0.116 4.116 7 C -0.147 4.147 8 C -0.093 4.093 9 C 0.149 3.851 10 H 0.028 0.972 11 N -0.345 5.345 12 C -0.581 4.581 13 H 0.060 0.940 14 C -0.167 4.167 15 N -0.515 5.515 16 Si 0.773 3.227 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.137 4.137 21 C -0.115 4.115 22 C -0.045 4.045 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.088 -12.652 0.068 18.935 hybrid contribution 0.061 0.157 0.352 0.390 sum -14.026 -12.495 0.420 18.789 Atomic orbital electron populations 1.21728 0.93378 1.02631 1.02332 1.22447 0.97450 0.87365 1.01796 1.65299 1.10181 1.17788 1.30878 1.21567 0.96370 0.95053 0.90810 1.20771 0.96900 0.97768 0.98076 1.20628 0.97517 0.94320 0.99091 1.20956 0.93344 1.00082 1.00276 1.21367 0.98817 0.94509 0.94619 1.17842 0.86912 0.92473 0.87857 0.97195 1.59014 1.49823 1.22582 1.03071 1.21089 0.97756 1.07073 1.32195 0.93975 1.25660 0.94905 1.00397 0.95766 1.70220 1.02470 1.36588 1.42237 0.85752 0.77364 0.80447 0.79100 1.20074 1.20751 1.19872 1.20433 0.97347 0.95995 0.99956 1.20723 0.94174 0.97915 0.98659 1.21559 0.88491 0.94289 1.00133 0.92646 0.90436 0.92430 0.93794 0.89698 0.88613 0.91085 0.83823 0.86109 0.86296 0.87798 0.93487 0.87214 0.91068 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.97 71.98 0.72 -1.28 16 2 C 0.04 0.63 5.35 86.30 0.46 1.09 16 3 N -0.52 -12.24 5.47 -897.11 -4.91 -17.15 16 4 C 0.09 2.10 5.70 85.49 0.49 2.58 16 5 C -0.13 -4.15 6.26 -19.68 -0.12 -4.27 16 6 C -0.10 -3.08 10.04 22.25 0.22 -2.86 16 7 C -0.13 -4.86 9.29 22.27 0.21 -4.66 16 8 C -0.09 -3.93 4.88 -19.86 -0.10 -4.03 16 9 C 0.26 13.27 2.85 43.42 0.12 13.39 16 10 H 0.01 0.58 8.00 -2.39 -0.02 0.56 16 11 N -0.82 -39.08 8.36 -174.96 -1.46 -40.54 16 12 C -0.54 -30.65 8.70 25.60 0.22 -30.43 16 13 H 0.04 2.42 7.74 -2.91 -0.02 2.39 16 14 C 0.04 2.06 5.39 84.65 0.46 2.52 16 15 N -0.88 -52.19 12.77 21.45 0.27 -51.92 16 16 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 20 C -0.12 -4.72 9.66 22.25 0.22 -4.50 16 21 C -0.11 -3.83 6.26 -19.68 -0.12 -3.96 16 22 C 0.08 2.18 6.61 85.49 0.56 2.74 16 23 H 0.05 0.77 7.52 -2.39 -0.02 0.75 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.04 0.70 7.82 -2.39 -0.02 0.68 16 27 H 0.08 1.31 8.13 -2.39 -0.02 1.29 16 28 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.07 1.44 7.61 -2.39 -0.02 1.42 16 30 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 31 H 0.12 4.46 6.66 -2.91 -0.02 4.44 16 32 H 0.32 14.58 7.34 -89.69 -0.66 13.92 16 33 H 0.31 13.30 9.06 -89.69 -0.81 12.49 16 34 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.11 4.37 8.04 -2.91 -0.02 4.35 16 36 H 0.07 1.65 7.81 -2.39 -0.02 1.63 16 37 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -64.49 303.12 -1.14 -65.63 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.40 Total: 30.99 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 3.34 Total: -33.66 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -6.10 Total: -109.61 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.49 -1.14 -65.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.523 kcal (2) G-P(sol) polarization free energy of solvation -64.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds