Wall clock time and date at job start Mon Mar 30 2020 04:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.48046 * 111.00459 * 285.00713 * 3 2 1 5 5 C 1.51185 * 105.67616 * 213.03366 * 4 3 2 6 6 C 1.38175 * 131.77384 * 197.50599 * 5 4 3 7 7 C 1.38224 * 120.02439 * 180.02562 * 6 5 4 8 8 C 1.38253 * 120.00462 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99941 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46737 * 200.00443 * 9 8 7 11 11 N 1.46899 * 109.46716 * 319.99867 * 9 8 7 12 12 C 1.50699 * 109.47185 * 79.99830 * 9 8 7 13 13 H 1.07997 * 120.00074 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99791 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00028 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99821 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47095 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.46967 * 120.00043 * 16 14 12 19 19 H 1.48502 * 109.46806 * 240.00183 * 16 14 12 20 20 C 1.38219 * 120.00010 * 0.02562 * 8 7 6 21 21 C 1.38174 * 120.03233 * 359.97438 * 20 8 7 22 22 C 1.48057 * 111.00051 * 170.00151 * 3 2 1 23 23 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 28 28 H 1.09004 * 110.20740 * 332.08579 * 4 3 2 29 29 H 1.09004 * 110.20862 * 93.98337 * 4 3 2 30 30 H 1.07997 * 119.98893 * 0.02562 * 6 5 4 31 31 H 1.08006 * 119.99440 * 180.02562 * 7 6 5 32 32 H 1.00896 * 111.00294 * 296.04841 * 11 9 8 33 33 H 1.00903 * 111.00138 * 60.00656 * 11 9 8 34 34 H 0.96994 * 119.99911 * 179.97438 * 15 14 12 35 35 H 1.08007 * 119.98227 * 180.02562 * 20 8 7 36 36 H 1.09002 * 110.20610 * 266.01985 * 22 3 2 37 37 H 1.09000 * 110.20789 * 27.83488 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8591 2.0046 -1.3349 5 6 3.0240 2.9564 -1.4863 6 6 3.2407 4.0167 -2.3454 7 6 4.4181 4.7370 -2.2717 8 6 5.3792 4.3972 -1.3378 9 6 6.6627 5.1830 -1.2572 10 1 7.4207 4.5892 -0.7465 11 7 7.1252 5.5057 -2.6136 12 6 6.4234 6.4586 -0.4913 13 1 5.4404 6.6781 -0.1015 14 6 7.4597 7.3449 -0.2873 15 7 8.6568 7.0773 -0.7615 16 14 7.1633 8.9258 0.6627 17 1 5.7415 8.9892 1.0869 18 1 8.0387 8.9542 1.8618 19 1 7.4740 10.0902 -0.2049 20 6 5.1630 3.3367 -0.4781 21 6 3.9863 2.6161 -0.5511 22 6 3.4799 1.4315 0.2400 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8940 1.2404 -2.1114 29 1 0.9173 2.5511 -1.3856 30 1 2.4900 4.2827 -3.0748 31 1 4.5869 5.5659 -2.9432 32 1 7.3542 4.6675 -3.1265 33 1 6.4393 6.0563 -3.1081 34 1 9.3857 7.7010 -0.6183 35 1 5.9139 3.0717 0.2516 36 1 3.6826 1.5733 1.3016 37 1 3.9489 0.5131 -0.1131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260082411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:35 Heat of formation + Delta-G solvation = 37.117082 kcal Electronic energy + Delta-G solvation = -17404.685439 eV Core-core repulsion = 14760.615088 eV Total energy + Delta-G solvation = -2644.070351 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11279 -37.37835 -34.46464 -32.29228 -31.36403 -30.69425 -28.47727 -27.47108 -25.74918 -23.96254 -22.28433 -21.37618 -20.86613 -19.34875 -16.44647 -16.09851 -15.76373 -15.10174 -15.01257 -14.50072 -14.17396 -13.88179 -13.62690 -13.32948 -12.83068 -12.65827 -12.37683 -12.29382 -11.95924 -11.72165 -11.49260 -11.21698 -11.12952 -10.92069 -10.82921 -10.53384 -10.27408 -9.79787 -9.23768 -8.75930 -8.43235 -8.20993 -7.73370 -7.07142 -5.87311 -4.02043 1.87915 1.95466 3.33827 3.42071 3.46670 3.90718 4.26821 4.52341 4.61670 4.75875 4.95556 5.10092 5.30441 5.36795 5.39789 5.44460 5.52500 5.59186 5.65254 5.76272 5.78466 5.88359 6.02579 6.09428 6.20673 6.32580 6.50713 6.57550 6.62363 6.96187 7.02343 7.08194 7.10809 7.57908 7.59640 7.92023 8.19029 8.63131 9.00416 9.15299 9.66684 11.17013 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038078 B = 0.004915 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.162980 B = 5695.391270 C = 5882.635687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.039 3.961 3 N -0.506 5.506 4 C 0.085 3.915 5 C -0.136 4.136 6 C -0.101 4.101 7 C -0.119 4.119 8 C -0.065 4.065 9 C 0.253 3.747 10 H 0.047 0.953 11 N -0.809 5.809 12 C -0.529 4.529 13 H 0.054 0.946 14 C 0.083 3.917 15 N -0.847 5.847 16 Si 0.884 3.116 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.100 4.100 21 C -0.108 4.108 22 C 0.080 3.920 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.298 0.702 33 H 0.317 0.683 34 H 0.255 0.745 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 -12.421 -1.393 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 N -0.230 5.230 4 C -0.043 4.043 5 C -0.136 4.136 6 C -0.119 4.119 7 C -0.138 4.138 8 C -0.068 4.068 9 C 0.143 3.857 10 H 0.065 0.935 11 N -0.335 5.335 12 C -0.568 4.568 13 H 0.072 0.928 14 C -0.123 4.123 15 N -0.482 5.482 16 Si 0.712 3.288 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.119 4.119 21 C -0.109 4.109 22 C -0.048 4.048 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.065 0.935 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.689 -11.706 -0.621 16.554 hybrid contribution -0.562 -0.047 -0.403 0.693 sum -12.250 -11.753 -1.024 17.007 Atomic orbital electron populations 1.21724 0.94592 1.01330 1.02654 1.22330 0.96584 0.89002 1.00989 1.65239 1.13950 1.16851 1.26933 1.21522 0.97397 0.95596 0.89751 1.20262 0.96482 0.98216 0.98673 1.20337 0.97594 0.95101 0.98895 1.20909 0.93364 0.99516 0.99966 1.21741 0.99576 0.93356 0.92125 1.18226 0.85547 0.93689 0.88219 0.93549 1.59213 1.48683 1.21666 1.03889 1.20865 0.95993 1.04207 1.35714 0.92753 1.24950 0.95119 0.97582 0.94676 1.70115 1.00340 1.35296 1.42455 0.86690 0.78307 0.84034 0.79804 1.19849 1.21068 1.21028 1.20423 0.96039 0.95634 0.99827 1.20396 0.95298 0.97419 0.97742 1.21538 0.87325 0.95382 1.00512 0.91766 0.92389 0.92736 0.90627 0.94494 0.92980 0.89902 0.87081 0.86139 0.89200 0.86991 0.93505 0.86464 0.89411 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.03 37.16 0.37 -0.89 16 2 C 0.04 0.40 5.39 -3.82 -0.02 0.38 16 3 N -0.51 -6.73 5.44 -234.91 -1.28 -8.01 16 4 C 0.08 1.14 5.96 -4.11 -0.02 1.12 16 5 C -0.14 -2.24 6.26 -104.33 -0.65 -2.90 16 6 C -0.10 -1.70 10.04 -39.61 -0.40 -2.10 16 7 C -0.12 -2.27 9.29 -39.58 -0.37 -2.64 16 8 C -0.07 -1.38 4.88 -104.62 -0.51 -1.89 16 9 C 0.25 6.21 2.85 -70.01 -0.20 6.01 16 10 H 0.05 1.25 8.00 -51.93 -0.42 0.83 16 11 N -0.81 -18.78 8.36 -6.65 -0.06 -18.83 16 12 C -0.53 -14.53 8.70 -34.44 -0.30 -14.83 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.08 2.33 5.39 -17.82 -0.10 2.23 16 15 N -0.85 -24.60 12.77 55.43 0.71 -23.89 16 16 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.10 -1.95 9.66 -39.61 -0.38 -2.33 16 21 C -0.11 -1.87 6.26 -104.34 -0.65 -2.52 16 22 C 0.08 1.13 6.58 -4.10 -0.03 1.10 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16 26 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.04 0.36 7.68 -51.93 -0.40 -0.04 16 28 H 0.05 0.64 7.52 -51.93 -0.39 0.25 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.12 2.22 6.67 -52.48 -0.35 1.87 16 32 H 0.30 6.19 9.06 -39.29 -0.36 5.84 16 33 H 0.32 6.99 7.34 -39.29 -0.29 6.70 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.12 2.20 8.04 -52.48 -0.42 1.78 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.70 7.81 -51.93 -0.41 0.29 16 LS Contribution 303.31 15.07 4.57 4.57 Total: -1.00 -29.83 303.31 -9.84 -39.67 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.50 Total: 9.34 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -3.26 Total: -19.26 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.62 Total: -50.73 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.83 -9.84 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.786 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds