Wall clock time and date at job start Mon Mar 30 2020 04:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.48046 * 111.00459 * 285.00713 * 3 2 1 5 5 C 1.51185 * 105.67616 * 213.03366 * 4 3 2 6 6 C 1.38175 * 131.77384 * 197.50599 * 5 4 3 7 7 C 1.38224 * 120.02439 * 180.02562 * 6 5 4 8 8 C 1.38253 * 120.00462 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99941 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46737 * 200.00443 * 9 8 7 11 11 N 1.46899 * 109.46716 * 319.99867 * 9 8 7 12 12 C 1.50699 * 109.47185 * 79.99830 * 9 8 7 13 13 H 1.07997 * 120.00074 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99791 * 179.97438 * 12 9 8 15 15 N 1.31515 * 120.00028 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99821 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47095 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.46967 * 120.00043 * 16 14 12 19 19 H 1.48502 * 109.46806 * 240.00183 * 16 14 12 20 20 C 1.38219 * 120.00010 * 0.02562 * 8 7 6 21 21 C 1.38174 * 120.03233 * 359.97438 * 20 8 7 22 22 C 1.48057 * 111.00051 * 170.00151 * 3 2 1 23 23 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 28 28 H 1.09004 * 110.20740 * 332.08579 * 4 3 2 29 29 H 1.09004 * 110.20862 * 93.98337 * 4 3 2 30 30 H 1.07997 * 119.98893 * 0.02562 * 6 5 4 31 31 H 1.08006 * 119.99440 * 180.02562 * 7 6 5 32 32 H 1.00896 * 111.00294 * 296.04841 * 11 9 8 33 33 H 1.00903 * 111.00138 * 60.00656 * 11 9 8 34 34 H 0.96994 * 119.99911 * 179.97438 * 15 14 12 35 35 H 1.08007 * 119.98227 * 180.02562 * 20 8 7 36 36 H 1.09002 * 110.20610 * 266.01985 * 22 3 2 37 37 H 1.09000 * 110.20789 * 27.83488 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8591 2.0046 -1.3349 5 6 3.0240 2.9564 -1.4863 6 6 3.2407 4.0167 -2.3454 7 6 4.4181 4.7370 -2.2717 8 6 5.3792 4.3972 -1.3378 9 6 6.6627 5.1830 -1.2572 10 1 7.4207 4.5892 -0.7465 11 7 7.1252 5.5057 -2.6136 12 6 6.4234 6.4586 -0.4913 13 1 5.4404 6.6781 -0.1015 14 6 7.4597 7.3449 -0.2873 15 7 8.6568 7.0773 -0.7615 16 14 7.1633 8.9258 0.6627 17 1 5.7415 8.9892 1.0869 18 1 8.0387 8.9542 1.8618 19 1 7.4740 10.0902 -0.2049 20 6 5.1630 3.3367 -0.4781 21 6 3.9863 2.6161 -0.5511 22 6 3.4799 1.4315 0.2400 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8940 1.2404 -2.1114 29 1 0.9173 2.5511 -1.3856 30 1 2.4900 4.2827 -3.0748 31 1 4.5869 5.5659 -2.9432 32 1 7.3542 4.6675 -3.1265 33 1 6.4393 6.0563 -3.1081 34 1 9.3857 7.7010 -0.6183 35 1 5.9139 3.0717 0.2516 36 1 3.6826 1.5733 1.3016 37 1 3.9489 0.5131 -0.1131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260082411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:35 Heat of formation + Delta-G solvation = 16.949757 kcal Electronic energy + Delta-G solvation = -17405.559960 eV Core-core repulsion = 14760.615088 eV Total energy + Delta-G solvation = -2644.944872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37011 -38.70627 -36.10806 -33.86692 -32.86195 -32.12878 -29.66215 -28.84785 -27.64604 -25.11420 -23.97473 -22.55399 -21.91032 -20.92368 -18.48950 -17.32920 -16.94688 -16.73773 -16.31766 -16.08038 -15.70480 -15.17016 -14.97468 -14.52457 -14.24791 -14.01759 -13.93313 -13.48908 -13.18394 -13.08791 -12.77877 -12.73865 -12.58657 -12.36869 -12.26918 -11.87454 -11.75834 -11.54253 -11.23300 -10.56963 -9.90544 -9.62784 -9.14268 -8.85079 -7.99561 -6.21244 0.45878 0.52113 1.40945 1.43206 1.54112 2.45023 2.86638 2.94935 3.23850 3.45721 3.58950 4.11600 4.14617 4.23201 4.28799 4.42323 4.45377 4.46841 4.56744 4.63692 4.64445 4.72158 4.83516 4.95675 5.06280 5.06902 5.18396 5.34672 5.35700 5.49636 5.53299 5.74017 5.82403 5.91234 6.04596 6.09250 6.21168 6.64145 7.08917 7.24983 7.51205 9.03863 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.038078 B = 0.004915 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.162980 B = 5695.391270 C = 5882.635687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.037 3.963 3 N -0.517 5.517 4 C 0.089 3.911 5 C -0.134 4.134 6 C -0.097 4.097 7 C -0.128 4.128 8 C -0.091 4.091 9 C 0.259 3.741 10 H 0.010 0.990 11 N -0.818 5.818 12 C -0.541 4.541 13 H 0.042 0.958 14 C 0.036 3.964 15 N -0.879 5.879 16 Si 0.948 3.052 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.279 1.279 20 C -0.118 4.118 21 C -0.114 4.114 22 C 0.083 3.917 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.311 0.689 33 H 0.324 0.676 34 H 0.256 0.744 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.508 -13.387 -1.579 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 N -0.241 5.241 4 C -0.038 4.038 5 C -0.135 4.135 6 C -0.116 4.116 7 C -0.147 4.147 8 C -0.093 4.093 9 C 0.149 3.851 10 H 0.028 0.972 11 N -0.345 5.345 12 C -0.580 4.580 13 H 0.060 0.940 14 C -0.168 4.168 15 N -0.515 5.515 16 Si 0.774 3.226 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.137 4.137 21 C -0.115 4.115 22 C -0.045 4.045 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.162 0.838 31 H 0.139 0.861 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.027 -12.685 -0.808 18.929 hybrid contribution 0.096 0.151 -0.352 0.394 sum -13.931 -12.534 -1.160 18.775 Atomic orbital electron populations 1.21707 0.93413 1.02521 1.02281 1.22454 0.97487 0.87311 1.01835 1.65282 1.12974 1.19011 1.26882 1.21586 0.96323 0.95415 0.90495 1.20768 0.97286 0.97997 0.97462 1.20629 0.97155 0.94487 0.99295 1.20958 0.93968 1.00102 0.99639 1.21368 0.98958 0.94553 0.94433 1.17849 0.86503 0.92599 0.88158 0.97188 1.59011 1.49170 1.22662 1.03647 1.21115 0.95396 1.05526 1.35966 0.93982 1.25666 0.94897 1.00609 0.95591 1.70229 1.01030 1.36415 1.43853 0.85690 0.78051 0.80302 0.78568 1.19761 1.20556 1.20464 1.20432 0.97246 0.96176 0.99878 1.20717 0.94418 0.98002 0.98317 1.21558 0.88193 0.94553 1.00160 0.92502 0.90473 0.92724 0.89775 0.93648 0.91066 0.88638 0.83834 0.86112 0.87796 0.86288 0.93496 0.87200 0.89261 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 10.03 71.98 0.72 -1.27 16 2 C 0.04 0.62 5.39 86.30 0.47 1.09 16 3 N -0.52 -12.22 5.44 -897.12 -4.88 -17.10 16 4 C 0.09 2.09 5.96 85.49 0.51 2.60 16 5 C -0.13 -4.15 6.26 -19.68 -0.12 -4.27 16 6 C -0.10 -3.09 10.04 22.25 0.22 -2.87 16 7 C -0.13 -4.87 9.29 22.27 0.21 -4.66 16 8 C -0.09 -3.93 4.88 -19.86 -0.10 -4.03 16 9 C 0.26 13.25 2.85 43.43 0.12 13.37 16 10 H 0.01 0.58 8.00 -2.39 -0.02 0.56 16 11 N -0.82 -39.06 8.36 -174.95 -1.46 -40.52 16 12 C -0.54 -30.59 8.70 25.60 0.22 -30.36 16 13 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 14 C 0.04 2.04 5.39 84.66 0.46 2.50 16 15 N -0.88 -52.16 12.77 21.45 0.27 -51.89 16 16 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 17 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 C -0.12 -4.71 9.66 22.25 0.22 -4.50 16 21 C -0.11 -3.82 6.26 -19.68 -0.12 -3.95 16 22 C 0.08 2.17 6.58 85.49 0.56 2.74 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.05 0.77 7.70 -2.38 -0.02 0.75 16 26 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 27 H 0.05 0.71 7.68 -2.39 -0.02 0.70 16 28 H 0.07 1.44 7.52 -2.39 -0.02 1.43 16 29 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 31 H 0.12 4.46 6.67 -2.91 -0.02 4.44 16 32 H 0.31 13.30 9.06 -89.70 -0.81 12.48 16 33 H 0.32 14.57 7.34 -89.69 -0.66 13.91 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.11 4.37 8.04 -2.91 -0.02 4.35 16 36 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.07 1.64 7.81 -2.39 -0.02 1.62 16 Total: -1.00 -64.52 303.31 -1.08 -65.60 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: -0.40 Total: 30.85 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 3.36 Total: -33.61 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -6.07 Total: -109.51 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -64.52 -1.08 -65.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260082411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.549 kcal (2) G-P(sol) polarization free energy of solvation -64.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds