Wall clock time and date at job start Mon Mar 30 2020 04:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47957 * 110.99955 * 2 1 4 4 C 1.53931 * 86.18116 * 222.41724 * 3 2 1 5 5 C 1.50696 * 113.73521 * 138.07864 * 4 3 2 6 6 C 1.38260 * 120.00136 * 301.92052 * 5 4 3 7 7 C 1.38204 * 120.00100 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.00418 * 359.81671 * 7 6 5 9 9 C 1.38213 * 119.99396 * 0.41732 * 8 7 6 10 10 C 1.50700 * 120.00029 * 179.80731 * 9 8 7 11 11 H 1.08994 * 109.47551 * 199.72524 * 10 9 8 12 12 N 1.46900 * 109.47395 * 319.72986 * 10 9 8 13 13 C 1.50702 * 109.46869 * 79.72578 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.38216 * 119.99932 * 121.89884 * 5 4 3 22 22 C 1.48183 * 111.07122 * 260.56322 * 2 1 3 23 23 H 1.09000 * 109.47496 * 59.99929 * 1 2 3 24 24 H 1.08998 * 109.47307 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47170 * 299.99902 * 1 2 3 26 26 H 1.09005 * 113.75986 * 108.09891 * 3 2 1 27 27 H 1.08998 * 113.75858 * 336.73860 * 3 2 1 28 28 H 1.09005 * 113.73400 * 269.25567 * 4 3 2 29 29 H 1.07999 * 119.99856 * 0.02562 * 6 5 4 30 30 H 1.07996 * 120.00347 * 180.02562 * 7 6 5 31 31 H 1.07990 * 120.00491 * 180.22967 * 8 7 6 32 32 H 1.00907 * 110.99792 * 296.04461 * 12 10 9 33 33 H 1.00903 * 111.00086 * 59.99217 * 12 10 9 34 34 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.00350 * 0.02562 * 21 5 4 36 36 H 1.09006 * 113.75927 * 23.24305 * 22 2 1 37 37 H 1.08999 * 113.83296 * 251.80998 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8792 -1.0360 5 6 3.2574 1.8422 -2.1708 6 6 2.2003 2.2497 -2.9633 7 6 2.4170 3.1333 -4.0036 8 6 3.6903 3.6128 -4.2496 9 6 4.7479 3.2017 -3.4604 10 6 6.1365 3.7208 -3.7312 11 1 6.8687 3.0556 -3.2737 12 7 6.3643 3.7767 -5.1813 13 6 6.2789 5.1026 -3.1468 14 1 5.4473 5.5590 -2.6306 15 6 7.4730 5.7817 -3.2657 16 7 8.4858 5.2257 -3.8940 17 14 7.6520 7.4913 -2.5347 18 1 7.4186 7.4300 -1.0694 19 1 9.0219 8.0010 -2.7973 20 1 6.6577 8.4023 -3.1567 21 6 4.5309 2.3185 -2.4190 22 6 2.0017 -0.2267 -1.3640 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.4459 1.6802 0.9483 27 1 1.3009 2.1197 -0.3940 28 1 3.9458 0.5068 -0.5953 29 1 1.2050 1.8782 -2.7688 30 1 1.5912 3.4520 -4.6224 31 1 3.8590 4.3061 -5.0602 32 1 6.3380 2.8532 -5.5873 33 1 5.6975 4.3875 -5.6289 34 1 9.3258 5.7036 -3.9780 35 1 5.3568 2.0002 -1.8001 36 1 1.3042 0.0404 -2.1580 37 1 2.4505 -1.2101 -1.5038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260104563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:59 Heat of formation + Delta-G solvation = 60.084316 kcal Electronic energy + Delta-G solvation = -17427.287929 eV Core-core repulsion = 14784.213512 eV Total energy + Delta-G solvation = -2643.074417 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35959 -38.32618 -34.58306 -32.04785 -31.39879 -29.79746 -28.59141 -26.17335 -25.94926 -24.28164 -22.83562 -21.51713 -20.47593 -18.62529 -16.61039 -16.38404 -15.85247 -15.21329 -14.93983 -14.63609 -14.50370 -14.04371 -13.62699 -13.05290 -12.89341 -12.65037 -12.60088 -12.19389 -11.98799 -11.58985 -11.35239 -11.15537 -10.88479 -10.81276 -10.70783 -10.44540 -10.31003 -9.77857 -9.25676 -8.94418 -8.43026 -8.21892 -7.93012 -7.06715 -5.87606 -4.02632 1.87122 2.01041 3.35242 3.39975 3.42671 3.84853 4.21865 4.49940 4.66702 4.79553 5.01730 5.14833 5.22045 5.33297 5.36232 5.39127 5.46512 5.51710 5.62478 5.68233 5.74048 5.87218 6.00233 6.07774 6.16039 6.30007 6.34000 6.53642 6.66986 6.89933 7.00618 7.08946 7.13788 7.59791 7.61662 7.90426 8.19004 8.63119 9.00322 9.14876 9.65922 11.16671 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.005153 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.096855 B = 5432.056754 C = 5729.009760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.488 5.488 3 C 0.010 3.990 4 C -0.071 4.071 5 C -0.083 4.083 6 C -0.144 4.144 7 C -0.122 4.122 8 C -0.123 4.123 9 C -0.068 4.068 10 C 0.252 3.748 11 H 0.046 0.954 12 N -0.809 5.809 13 C -0.531 4.531 14 H 0.052 0.948 15 C 0.084 3.916 16 N -0.847 5.847 17 Si 0.885 3.115 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.112 4.112 22 C 0.007 3.993 23 H 0.033 0.967 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.298 0.702 33 H 0.317 0.683 34 H 0.256 0.744 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.458 -8.498 3.369 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.210 5.210 3 C -0.118 4.118 4 C -0.090 4.090 5 C -0.084 4.084 6 C -0.162 4.162 7 C -0.140 4.140 8 C -0.141 4.141 9 C -0.070 4.070 10 C 0.143 3.857 11 H 0.064 0.936 12 N -0.335 5.335 13 C -0.569 4.569 14 H 0.071 0.929 15 C -0.123 4.123 16 N -0.482 5.482 17 Si 0.712 3.288 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.130 4.130 22 C -0.121 4.121 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.066 0.934 35 H 0.135 0.865 36 H 0.092 0.908 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.371 -8.628 4.026 15.611 hybrid contribution -1.332 1.196 -0.304 1.815 sum -13.703 -7.433 3.722 16.027 Atomic orbital electron populations 1.22844 0.90006 1.02139 1.00983 1.68492 1.08798 1.19010 1.24728 1.24044 0.96778 0.91017 1.00007 1.21870 0.98622 0.94366 0.94099 1.19565 0.93880 0.98439 0.96498 1.20625 0.97540 1.00614 0.97391 1.20977 0.96884 0.98167 0.97958 1.20988 0.92294 1.00077 1.00732 1.21801 1.00090 0.92377 0.92773 1.18219 0.84635 0.96556 0.86328 0.93599 1.59218 1.57722 1.11778 1.04789 1.20778 0.98202 1.00416 1.37524 0.92949 1.24947 0.95831 0.97244 0.94276 1.70096 1.02247 1.36811 1.39010 0.86814 0.77064 0.85226 0.79660 1.20360 1.21314 1.20364 1.20989 0.95730 0.98200 0.98117 1.24179 0.97028 1.00062 0.90858 0.94811 0.91334 0.91472 0.89210 0.90975 0.87752 0.87760 0.87201 0.86589 0.89205 0.87035 0.93380 0.86485 0.90818 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.65 60.06 0.58 0.48 16 2 N -0.49 -5.74 6.55 -246.46 -1.62 -7.36 16 3 C 0.01 0.12 7.45 -2.76 -0.02 0.10 16 4 C -0.07 -0.94 4.16 -90.84 -0.38 -1.31 16 5 C -0.08 -1.32 5.30 -104.62 -0.55 -1.87 16 6 C -0.14 -2.17 8.53 -39.59 -0.34 -2.51 16 7 C -0.12 -1.96 10.05 -39.58 -0.40 -2.35 16 8 C -0.12 -2.29 9.29 -39.58 -0.37 -2.66 16 9 C -0.07 -1.41 4.88 -104.62 -0.51 -1.92 16 10 C 0.25 6.16 2.85 -70.02 -0.20 5.96 16 11 H 0.05 1.23 8.00 -51.93 -0.42 0.82 16 12 N -0.81 -18.78 8.38 -6.65 -0.06 -18.83 16 13 C -0.53 -14.46 8.70 -34.44 -0.30 -14.76 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.08 2.33 5.39 -17.82 -0.10 2.23 16 16 N -0.85 -24.53 12.78 55.43 0.71 -23.83 16 17 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.11 -2.09 9.33 -39.58 -0.37 -2.46 16 22 C 0.01 0.08 7.36 -2.63 -0.02 0.06 16 23 H 0.03 0.31 7.63 -51.93 -0.40 -0.09 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 0.87 7.44 -51.93 -0.39 0.49 16 28 H 0.10 1.37 8.09 -51.93 -0.42 0.95 16 29 H 0.10 1.34 6.75 -52.49 -0.35 0.99 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 2.14 6.67 -52.49 -0.35 1.79 16 32 H 0.30 6.20 9.06 -39.29 -0.36 5.84 16 33 H 0.32 7.00 7.35 -39.29 -0.29 6.71 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.12 2.15 8.03 -52.49 -0.42 1.73 16 36 H 0.07 0.82 5.90 -51.93 -0.31 0.51 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 303.10 15.07 4.57 4.57 Total: -1.00 -29.24 303.10 -9.74 -38.98 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.35 Total: 11.19 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.97 Total: -21.00 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.96 Total: -50.02 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.24 -9.74 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260104563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.062 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds