Wall clock time and date at job start Mon Mar 30 2020 04:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47957 * 110.99955 * 2 1 4 4 C 1.53931 * 86.18116 * 222.41724 * 3 2 1 5 5 C 1.50696 * 113.73521 * 138.07864 * 4 3 2 6 6 C 1.38260 * 120.00136 * 301.92052 * 5 4 3 7 7 C 1.38204 * 120.00100 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.00418 * 359.81671 * 7 6 5 9 9 C 1.38213 * 119.99396 * 0.41732 * 8 7 6 10 10 C 1.50700 * 120.00029 * 179.80731 * 9 8 7 11 11 H 1.08994 * 109.47551 * 199.72524 * 10 9 8 12 12 N 1.46900 * 109.47395 * 319.72986 * 10 9 8 13 13 C 1.50702 * 109.46869 * 79.72578 * 10 9 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 10 9 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 10 9 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 10 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 10 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.38216 * 119.99932 * 121.89884 * 5 4 3 22 22 C 1.48183 * 111.07122 * 260.56322 * 2 1 3 23 23 H 1.09000 * 109.47496 * 59.99929 * 1 2 3 24 24 H 1.08998 * 109.47307 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47170 * 299.99902 * 1 2 3 26 26 H 1.09005 * 113.75986 * 108.09891 * 3 2 1 27 27 H 1.08998 * 113.75858 * 336.73860 * 3 2 1 28 28 H 1.09005 * 113.73400 * 269.25567 * 4 3 2 29 29 H 1.07999 * 119.99856 * 0.02562 * 6 5 4 30 30 H 1.07996 * 120.00347 * 180.02562 * 7 6 5 31 31 H 1.07990 * 120.00491 * 180.22967 * 8 7 6 32 32 H 1.00907 * 110.99792 * 296.04461 * 12 10 9 33 33 H 1.00903 * 111.00086 * 59.99217 * 12 10 9 34 34 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.00350 * 0.02562 * 21 5 4 36 36 H 1.09006 * 113.75927 * 23.24305 * 22 2 1 37 37 H 1.08999 * 113.83296 * 251.80998 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8792 -1.0360 5 6 3.2574 1.8422 -2.1708 6 6 2.2003 2.2497 -2.9633 7 6 2.4170 3.1333 -4.0036 8 6 3.6903 3.6128 -4.2496 9 6 4.7479 3.2017 -3.4604 10 6 6.1365 3.7208 -3.7312 11 1 6.8687 3.0556 -3.2737 12 7 6.3643 3.7767 -5.1813 13 6 6.2789 5.1026 -3.1468 14 1 5.4473 5.5590 -2.6306 15 6 7.4730 5.7817 -3.2657 16 7 8.4858 5.2257 -3.8940 17 14 7.6520 7.4913 -2.5347 18 1 7.4186 7.4300 -1.0694 19 1 9.0219 8.0010 -2.7973 20 1 6.6577 8.4023 -3.1567 21 6 4.5309 2.3185 -2.4190 22 6 2.0017 -0.2267 -1.3640 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.4459 1.6802 0.9483 27 1 1.3009 2.1197 -0.3940 28 1 3.9458 0.5068 -0.5953 29 1 1.2050 1.8782 -2.7688 30 1 1.5912 3.4520 -4.6224 31 1 3.8590 4.3061 -5.0602 32 1 6.3380 2.8532 -5.5873 33 1 5.6975 4.3875 -5.6289 34 1 9.3258 5.7036 -3.9780 35 1 5.3568 2.0002 -1.8001 36 1 1.3042 0.0404 -2.1580 37 1 2.4505 -1.2101 -1.5038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260104563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:58 Heat of formation + Delta-G solvation = 39.647714 kcal Electronic energy + Delta-G solvation = -17428.174126 eV Core-core repulsion = 14784.213512 eV Total energy + Delta-G solvation = -2643.960615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.41820 -39.64038 -36.33857 -33.76841 -32.83711 -31.22442 -29.77520 -27.97862 -27.06822 -25.38547 -24.43877 -22.85355 -21.77296 -19.87706 -18.46834 -17.82863 -16.91002 -16.64568 -16.28024 -16.13723 -15.78059 -15.51227 -15.12397 -14.44384 -14.27318 -13.94404 -13.65999 -13.61783 -13.29271 -13.05259 -12.86086 -12.71179 -12.45066 -12.33331 -11.89094 -11.82871 -11.66311 -11.38532 -11.23343 -10.55634 -9.81223 -9.58444 -9.41314 -8.86641 -7.98759 -6.20619 0.52411 0.62456 1.42992 1.43566 1.51318 2.45507 2.91871 2.95080 3.24790 3.64022 3.79585 4.05192 4.15691 4.17846 4.27072 4.30533 4.38765 4.45470 4.52094 4.57851 4.66367 4.74892 4.81948 4.85838 4.99269 5.07797 5.17591 5.27059 5.32483 5.38235 5.64086 5.72345 5.77910 5.97164 6.05567 6.14162 6.26825 6.64948 7.09699 7.25810 7.51763 9.04408 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.005153 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.096855 B = 5432.056754 C = 5729.009760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.499 5.499 3 C 0.014 3.986 4 C -0.078 4.078 5 C -0.073 4.073 6 C -0.133 4.133 7 C -0.114 4.114 8 C -0.136 4.136 9 C -0.093 4.093 10 C 0.257 3.743 11 H 0.007 0.993 12 N -0.819 5.819 13 C -0.542 4.542 14 H 0.043 0.957 15 C 0.035 3.965 16 N -0.880 5.880 17 Si 0.948 3.052 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.132 4.132 22 C 0.015 3.985 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.112 0.888 32 H 0.310 0.690 33 H 0.323 0.677 34 H 0.256 0.744 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.177 -8.709 3.751 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.221 5.221 3 C -0.115 4.115 4 C -0.097 4.097 5 C -0.073 4.073 6 C -0.151 4.151 7 C -0.132 4.132 8 C -0.155 4.155 9 C -0.095 4.095 10 C 0.147 3.853 11 H 0.025 0.975 12 N -0.346 5.346 13 C -0.581 4.581 14 H 0.061 0.939 15 C -0.169 4.169 16 N -0.516 5.516 17 Si 0.773 3.227 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.151 4.151 22 C -0.113 4.113 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.157 0.843 30 H 0.161 0.839 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.103 0.897 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.107 -8.846 4.413 18.054 hybrid contribution -0.564 1.172 -0.396 1.360 sum -15.671 -7.673 4.017 17.905 Atomic orbital electron populations 1.22911 0.88468 1.03035 1.01717 1.68483 1.10414 1.18438 1.24773 1.24022 0.96356 0.91576 0.99508 1.21927 0.99265 0.94822 0.93718 1.19788 0.92722 0.97895 0.96934 1.21003 0.98686 0.99297 0.96087 1.21316 0.96436 0.97289 0.98188 1.21017 0.93099 1.00705 1.00646 1.21404 0.98649 0.94545 0.94937 1.17853 0.86290 0.94650 0.86486 0.97481 1.59019 1.58306 1.12835 1.04470 1.21073 0.97926 1.01781 1.37305 0.93854 1.25683 0.95572 1.00878 0.94723 1.70224 1.02603 1.38267 1.40516 0.85812 0.77098 0.80843 0.78917 1.19943 1.20905 1.19785 1.21008 0.97101 0.98949 0.98042 1.24178 0.96330 0.99573 0.91214 0.93939 0.90413 0.90879 0.89282 0.90411 0.88416 0.84329 0.83875 0.86979 0.87866 0.86365 0.93534 0.87656 0.89708 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.20 9.65 127.69 1.23 1.03 16 2 N -0.50 -10.30 6.55 -933.67 -6.12 -16.42 16 3 C 0.01 0.31 7.45 86.41 0.64 0.95 16 4 C -0.08 -1.94 4.16 -10.90 -0.05 -1.98 16 5 C -0.07 -2.19 5.30 -19.87 -0.11 -2.30 16 6 C -0.13 -3.56 8.53 22.27 0.19 -3.37 16 7 C -0.11 -3.34 10.05 22.27 0.22 -3.12 16 8 C -0.14 -5.01 9.29 22.27 0.21 -4.81 16 9 C -0.09 -3.94 4.88 -19.86 -0.10 -4.03 16 10 C 0.26 13.10 2.85 43.42 0.12 13.22 16 11 H 0.01 0.42 8.00 -2.39 -0.02 0.40 16 12 N -0.82 -39.23 8.38 -174.96 -1.47 -40.70 16 13 C -0.54 -30.41 8.70 25.60 0.22 -30.18 16 14 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 15 C 0.04 1.98 5.39 84.66 0.46 2.44 16 16 N -0.88 -52.32 12.78 21.45 0.27 -52.05 16 17 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 21 C -0.13 -5.04 9.33 22.27 0.21 -4.84 16 22 C 0.02 0.31 7.36 86.37 0.64 0.95 16 23 H 0.04 0.60 7.63 -2.39 -0.02 0.58 16 24 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.08 1.62 7.44 -2.39 -0.02 1.60 16 28 H 0.10 2.53 8.09 -2.38 -0.02 2.51 16 29 H 0.14 2.82 6.75 -2.91 -0.02 2.80 16 30 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.11 4.12 6.67 -2.92 -0.02 4.10 16 32 H 0.31 13.34 9.06 -89.69 -0.81 12.52 16 33 H 0.32 14.60 7.35 -89.69 -0.66 13.95 16 34 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 35 H 0.11 4.12 8.03 -2.91 -0.02 4.10 16 36 H 0.08 1.52 5.90 -2.38 -0.01 1.51 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -63.60 303.10 -1.79 -65.39 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.40 Total: 33.47 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 3.89 Total: -36.05 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -7.31 Total: -109.16 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -63.60 -1.79 -65.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260104563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.036 kcal (2) G-P(sol) polarization free energy of solvation -63.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds