Wall clock time and date at job start Mon Mar 30 2020 03:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38164 * 119.84814 * 2 1 4 4 C 1.38267 * 120.16544 * 179.97438 * 3 2 1 5 5 C 1.38067 * 119.91028 * 0.09773 * 4 3 2 6 6 C 1.39036 * 120.02816 * 0.27564 * 5 4 3 7 7 C 1.38464 * 119.84895 * 180.02562 * 2 1 3 8 8 C 1.50595 * 118.93241 * 359.74387 * 7 2 1 9 9 C 1.50698 * 109.30166 * 279.71302 * 8 7 2 10 10 H 1.08000 * 120.00316 * 2.24262 * 9 8 7 11 11 C 1.37880 * 119.99823 * 182.24834 * 9 8 7 12 12 N 1.31513 * 119.99422 * 193.28150 * 11 9 8 13 13 Si 1.86793 * 120.00230 * 13.27695 * 11 9 8 14 14 H 1.48501 * 109.47213 * 92.63789 * 13 11 9 15 15 H 1.48501 * 109.47505 * 212.63820 * 13 11 9 16 16 H 1.48498 * 109.47136 * 332.64011 * 13 11 9 17 17 C 1.52995 * 109.30333 * 39.09208 * 8 7 2 18 18 N 1.46906 * 109.47114 * 52.11853 * 17 8 7 19 19 C 1.52860 * 110.48213 * 159.40256 * 8 7 2 20 20 C 1.53427 * 108.85675 * 51.33553 * 19 8 7 21 21 N 1.39916 * 119.14012 * 179.81306 * 6 5 4 22 22 H 1.08995 * 109.46888 * 101.58899 * 1 2 3 23 23 H 1.09002 * 109.46758 * 221.59063 * 1 2 3 24 24 H 1.08994 * 109.46911 * 341.58601 * 1 2 3 25 25 H 1.08011 * 119.91869 * 359.95276 * 3 2 1 26 26 H 1.07996 * 120.04624 * 180.12215 * 4 3 2 27 27 H 1.07997 * 119.98434 * 179.97438 * 5 4 3 28 28 H 0.97003 * 119.99561 * 179.97438 * 12 11 9 29 29 H 1.08999 * 109.47421 * 172.11601 * 17 8 7 30 30 H 1.08997 * 109.47093 * 292.12307 * 17 8 7 31 31 H 1.00897 * 110.99865 * 61.76340 * 18 17 8 32 32 H 1.00898 * 110.99749 * 185.71528 * 18 17 8 33 33 H 1.09000 * 109.57089 * 171.15253 * 19 8 7 34 34 H 1.09001 * 109.56996 * 291.52356 * 19 8 7 35 35 H 1.09001 * 109.79299 * 56.39266 * 20 19 8 36 36 H 1.09004 * 109.79105 * 177.17998 * 20 19 8 37 37 H 0.97003 * 120.49216 * 346.13714 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1984 0.0000 4 6 3.5773 1.2060 0.0005 5 6 4.2724 0.0131 -0.0010 6 6 3.5826 -1.1941 -0.0088 7 6 2.1962 -1.2010 -0.0005 8 6 1.4156 -2.4888 0.0048 9 6 0.9577 -2.7880 1.4090 10 1 1.1765 -2.0946 2.2076 11 6 0.2595 -3.9469 1.6742 12 7 -0.3635 -4.0908 2.8235 13 14 0.1982 -5.3126 0.4012 14 1 1.2978 -6.2773 0.6569 15 1 -1.1072 -6.0148 0.4908 16 1 0.3555 -4.7313 -0.9562 17 6 0.1916 -2.3421 -0.9012 18 7 0.6147 -1.8547 -2.2209 19 6 2.2828 -3.6419 -0.5003 20 6 3.6034 -3.6483 0.2807 21 7 4.3057 -2.3919 -0.0142 22 1 -0.3633 -0.2064 -1.0067 23 1 -0.3633 -0.7686 0.6822 24 1 -0.3633 0.9750 0.3246 25 1 1.6508 2.1316 -0.0008 26 1 4.1129 2.1438 0.0025 27 1 5.3524 0.0177 -0.0010 28 1 -0.8550 -4.9060 3.0099 29 1 -0.2973 -3.3101 -1.0111 30 1 -0.5055 -1.6311 -0.4578 31 1 1.2396 -2.5106 -2.6653 32 1 -0.1829 -1.6609 -2.8076 33 1 1.7615 -4.5864 -0.3441 34 1 2.4873 -3.5069 -1.5624 35 1 3.3998 -3.7155 1.3495 36 1 4.2134 -4.4955 -0.0327 37 1 5.2551 -2.3928 -0.2129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:17 Heat of formation + Delta-G solvation = 80.563517 kcal Electronic energy + Delta-G solvation = -19213.320528 eV Core-core repulsion = 16571.134156 eV Total energy + Delta-G solvation = -2642.186372 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.87355 -36.26982 -35.38624 -32.44187 -31.31290 -30.27047 -29.47708 -26.74012 -25.51669 -23.61521 -22.77735 -21.30450 -20.34336 -18.73584 -16.48209 -15.98988 -15.69925 -15.48571 -14.99460 -14.40296 -13.83788 -13.52343 -13.30935 -12.86052 -12.66333 -12.58535 -12.28162 -12.00781 -11.72512 -11.49696 -11.22382 -10.85690 -10.78699 -10.49463 -10.17943 -9.90033 -9.44149 -9.14744 -9.07025 -8.70263 -8.50317 -7.64988 -7.49314 -6.51306 -6.17075 -4.13035 2.37158 2.51402 3.16086 3.21466 3.32670 4.22254 4.29881 4.76893 5.08013 5.40795 5.62133 5.69466 5.77520 5.80516 5.92291 6.10973 6.14028 6.17234 6.37837 6.38426 6.46979 6.52108 6.59578 6.73212 6.83146 6.86443 6.99236 7.01855 7.16190 7.26322 7.40156 7.62184 7.72043 7.80841 7.94845 8.09833 8.17143 8.50080 8.55691 8.93199 9.46552 10.95291 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024415 B = 0.011304 C = 0.010017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.554599 B = 2476.342256 C = 2794.565988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.017 4.017 3 C -0.184 4.184 4 C -0.099 4.099 5 C -0.210 4.210 6 C 0.207 3.793 7 C -0.066 4.066 8 C 0.095 3.905 9 C -0.500 4.500 10 H 0.077 0.923 11 C 0.075 3.925 12 N -0.888 5.888 13 Si 0.872 3.128 14 H -0.286 1.286 15 H -0.305 1.305 16 H -0.246 1.246 17 C 0.016 3.984 18 N -0.844 5.844 19 C -0.135 4.135 20 C 0.131 3.869 21 N -0.756 5.756 22 H 0.079 0.921 23 H 0.096 0.904 24 H 0.038 0.962 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.264 0.736 29 H 0.021 0.979 30 H 0.112 0.888 31 H 0.326 0.674 32 H 0.322 0.678 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.733 3.694 -7.972 9.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.018 4.018 3 C -0.204 4.204 4 C -0.118 4.118 5 C -0.233 4.233 6 C 0.106 3.894 7 C -0.071 4.071 8 C 0.094 3.906 9 C -0.538 4.538 10 H 0.095 0.905 11 C -0.127 4.127 12 N -0.525 5.525 13 Si 0.706 3.294 14 H -0.213 1.213 15 H -0.233 1.233 16 H -0.172 1.172 17 C -0.113 4.113 18 N -0.372 5.372 19 C -0.173 4.173 20 C 0.007 3.993 21 N -0.387 5.387 22 H 0.097 0.903 23 H 0.114 0.886 24 H 0.057 0.943 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.808 4.021 -7.372 9.676 hybrid contribution 0.014 -1.857 -1.007 2.112 sum 4.822 2.164 -8.379 9.907 Atomic orbital electron populations 1.21431 0.92701 1.01068 1.02707 1.19317 0.95292 0.91643 0.95530 1.20603 0.93903 0.96851 1.08994 1.20514 0.94104 0.96334 1.00859 1.20393 0.98187 0.91670 1.13048 1.17565 0.91033 0.85484 0.95298 1.19048 0.90356 0.95269 1.02381 1.17278 0.90069 0.88177 0.95092 1.20828 1.34879 1.06309 0.91749 0.90528 1.25015 0.94373 0.98308 0.95023 1.69949 1.31724 1.27024 1.23830 0.87516 0.75946 0.82477 0.83494 1.21339 1.23339 1.17228 1.23622 0.99948 0.99089 0.88668 1.58984 1.20673 1.51780 1.05765 1.22462 0.96793 1.00154 0.97861 1.21467 0.92661 0.84492 1.00682 1.44539 1.09715 1.04340 1.80113 0.90320 0.88601 0.94329 0.87842 0.87730 0.87849 0.92631 0.96084 0.87028 0.86215 0.86783 0.92829 0.93525 0.90958 0.92602 0.77793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 7.69 36.01 0.28 -2.05 16 2 C -0.02 -0.34 5.47 -104.56 -0.57 -0.92 16 3 C -0.18 -3.41 9.65 -39.60 -0.38 -3.79 16 4 C -0.10 -1.74 10.05 -39.63 -0.40 -2.14 16 5 C -0.21 -3.82 9.88 -39.35 -0.39 -4.21 16 6 C 0.21 4.17 6.48 -83.72 -0.54 3.62 16 7 C -0.07 -1.43 4.12 -104.44 -0.43 -1.86 16 8 C 0.10 2.10 0.12 -156.94 -0.02 2.08 16 9 C -0.50 -13.06 6.47 -34.44 -0.22 -13.29 16 10 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 11 C 0.08 2.02 5.36 -17.82 -0.10 1.93 16 12 N -0.89 -25.80 13.96 55.43 0.77 -25.02 16 13 Si 0.87 20.41 23.19 -169.99 -3.94 16.47 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 16 H -0.25 -5.29 4.16 56.52 0.24 -5.06 16 17 C 0.02 0.32 4.27 -3.82 -0.02 0.30 16 18 N -0.84 -14.59 7.60 -10.37 -0.08 -14.67 16 19 C -0.13 -2.80 3.85 -26.58 -0.10 -2.90 16 20 C 0.13 2.53 7.01 -3.59 -0.03 2.50 16 21 N -0.76 -13.61 5.80 -58.09 -0.34 -13.95 16 22 H 0.08 1.39 5.64 -51.93 -0.29 1.10 16 23 H 0.10 2.05 5.20 -51.93 -0.27 1.78 16 24 H 0.04 0.64 7.97 -51.93 -0.41 0.23 16 25 H 0.10 1.69 8.02 -52.48 -0.42 1.27 16 26 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.02 0.45 4.22 -51.93 -0.22 0.23 16 30 H 0.11 2.29 3.27 -56.08 -0.18 2.10 16 31 H 0.33 5.53 7.46 -39.29 -0.29 5.24 16 32 H 0.32 4.73 9.08 -39.29 -0.36 4.38 16 33 H 0.05 1.16 1.88 -51.93 -0.10 1.07 16 34 H 0.05 0.91 6.61 -51.93 -0.34 0.56 16 35 H 0.07 1.58 7.39 -51.93 -0.38 1.19 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.39 5.78 8.86 -40.82 -0.36 5.42 16 LS Contribution 265.49 15.07 4.00 4.00 Total: -1.00 -28.91 265.49 -7.13 -36.03 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -4.63 Total: 17.85 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.92 Total: -20.71 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.36 Total: -53.64 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -3.94 Total: 16.47 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.91 -7.13 -36.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.597 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds