Wall clock time and date at job start Mon Mar 30 2020 03:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38164 * 119.84814 * 2 1 4 4 C 1.38267 * 120.16544 * 179.97438 * 3 2 1 5 5 C 1.38067 * 119.91028 * 0.09773 * 4 3 2 6 6 C 1.39036 * 120.02816 * 0.27564 * 5 4 3 7 7 C 1.38464 * 119.84895 * 180.02562 * 2 1 3 8 8 C 1.50595 * 118.93241 * 359.74387 * 7 2 1 9 9 C 1.50698 * 109.30166 * 279.71302 * 8 7 2 10 10 H 1.08000 * 120.00316 * 2.24262 * 9 8 7 11 11 C 1.37880 * 119.99823 * 182.24834 * 9 8 7 12 12 N 1.31513 * 119.99422 * 193.28150 * 11 9 8 13 13 Si 1.86793 * 120.00230 * 13.27695 * 11 9 8 14 14 H 1.48501 * 109.47213 * 92.63789 * 13 11 9 15 15 H 1.48501 * 109.47505 * 212.63820 * 13 11 9 16 16 H 1.48498 * 109.47136 * 332.64011 * 13 11 9 17 17 C 1.52995 * 109.30333 * 39.09208 * 8 7 2 18 18 N 1.46906 * 109.47114 * 52.11853 * 17 8 7 19 19 C 1.52860 * 110.48213 * 159.40256 * 8 7 2 20 20 C 1.53427 * 108.85675 * 51.33553 * 19 8 7 21 21 N 1.39916 * 119.14012 * 179.81306 * 6 5 4 22 22 H 1.08995 * 109.46888 * 101.58899 * 1 2 3 23 23 H 1.09002 * 109.46758 * 221.59063 * 1 2 3 24 24 H 1.08994 * 109.46911 * 341.58601 * 1 2 3 25 25 H 1.08011 * 119.91869 * 359.95276 * 3 2 1 26 26 H 1.07996 * 120.04624 * 180.12215 * 4 3 2 27 27 H 1.07997 * 119.98434 * 179.97438 * 5 4 3 28 28 H 0.97003 * 119.99561 * 179.97438 * 12 11 9 29 29 H 1.08999 * 109.47421 * 172.11601 * 17 8 7 30 30 H 1.08997 * 109.47093 * 292.12307 * 17 8 7 31 31 H 1.00897 * 110.99865 * 61.76340 * 18 17 8 32 32 H 1.00898 * 110.99749 * 185.71528 * 18 17 8 33 33 H 1.09000 * 109.57089 * 171.15253 * 19 8 7 34 34 H 1.09001 * 109.56996 * 291.52356 * 19 8 7 35 35 H 1.09001 * 109.79299 * 56.39266 * 20 19 8 36 36 H 1.09004 * 109.79105 * 177.17998 * 20 19 8 37 37 H 0.97003 * 120.49216 * 346.13714 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1984 0.0000 4 6 3.5773 1.2060 0.0005 5 6 4.2724 0.0131 -0.0010 6 6 3.5826 -1.1941 -0.0088 7 6 2.1962 -1.2010 -0.0005 8 6 1.4156 -2.4888 0.0048 9 6 0.9577 -2.7880 1.4090 10 1 1.1765 -2.0946 2.2076 11 6 0.2595 -3.9469 1.6742 12 7 -0.3635 -4.0908 2.8235 13 14 0.1982 -5.3126 0.4012 14 1 1.2978 -6.2773 0.6569 15 1 -1.1072 -6.0148 0.4908 16 1 0.3555 -4.7313 -0.9562 17 6 0.1916 -2.3421 -0.9012 18 7 0.6147 -1.8547 -2.2209 19 6 2.2828 -3.6419 -0.5003 20 6 3.6034 -3.6483 0.2807 21 7 4.3057 -2.3919 -0.0142 22 1 -0.3633 -0.2064 -1.0067 23 1 -0.3633 -0.7686 0.6822 24 1 -0.3633 0.9750 0.3246 25 1 1.6508 2.1316 -0.0008 26 1 4.1129 2.1438 0.0025 27 1 5.3524 0.0177 -0.0010 28 1 -0.8550 -4.9060 3.0099 29 1 -0.2973 -3.3101 -1.0111 30 1 -0.5055 -1.6311 -0.4578 31 1 1.2396 -2.5106 -2.6653 32 1 -0.1829 -1.6609 -2.8076 33 1 1.7615 -4.5864 -0.3441 34 1 2.4873 -3.5069 -1.5624 35 1 3.3998 -3.7155 1.3495 36 1 4.2134 -4.4955 -0.0327 37 1 5.2551 -2.3928 -0.2129 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:17 Heat of formation + Delta-G solvation = 59.155716 kcal Electronic energy + Delta-G solvation = -19214.248840 eV Core-core repulsion = 16571.134156 eV Total energy + Delta-G solvation = -2643.114684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41446 -37.81477 -36.87427 -34.39272 -32.82291 -31.86813 -30.98764 -28.34881 -27.12308 -25.42575 -24.31708 -22.85998 -21.83793 -20.40694 -18.26126 -17.58259 -17.40784 -17.01949 -16.47959 -15.91737 -15.43207 -15.15864 -15.01833 -14.50627 -14.25247 -14.13987 -13.85486 -13.51672 -13.29079 -13.06159 -12.85406 -12.60629 -12.35475 -12.29685 -11.71176 -11.48024 -11.24668 -10.89692 -10.66940 -10.46876 -10.27060 -9.15456 -9.00068 -8.27660 -7.97460 -6.25140 0.90583 1.04286 1.29744 1.30733 1.43331 2.31924 2.81057 3.06660 3.28810 3.93852 4.15219 4.18752 4.31378 4.35604 4.39571 4.55275 4.69739 4.70515 4.79273 4.88584 4.91290 4.97816 5.10322 5.18440 5.23336 5.25645 5.43514 5.52706 5.62061 5.70272 5.80698 5.94902 6.21399 6.28854 6.42978 6.47796 6.68641 6.76341 6.87721 7.23080 7.37398 8.89814 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.024415 B = 0.011304 C = 0.010017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.554599 B = 2476.342256 C = 2794.565988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.037 4.037 3 C -0.193 4.193 4 C -0.095 4.095 5 C -0.212 4.212 6 C 0.188 3.812 7 C -0.100 4.100 8 C 0.096 3.904 9 C -0.484 4.484 10 H 0.021 0.979 11 C 0.022 3.978 12 N -0.943 5.943 13 Si 0.930 3.070 14 H -0.281 1.281 15 H -0.317 1.317 16 H -0.211 1.211 17 C 0.022 3.978 18 N -0.836 5.836 19 C -0.137 4.137 20 C 0.132 3.868 21 N -0.747 5.747 22 H 0.091 0.909 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.124 0.876 26 H 0.139 0.861 27 H 0.131 0.869 28 H 0.262 0.738 29 H 0.011 0.989 30 H 0.106 0.894 31 H 0.332 0.668 32 H 0.340 0.660 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.035 0.965 36 H 0.092 0.908 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 4.456 -10.619 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.038 4.038 3 C -0.213 4.213 4 C -0.114 4.114 5 C -0.235 4.235 6 C 0.087 3.913 7 C -0.104 4.104 8 C 0.094 3.906 9 C -0.523 4.523 10 H 0.040 0.960 11 C -0.176 4.176 12 N -0.583 5.583 13 Si 0.761 3.239 14 H -0.208 1.208 15 H -0.247 1.247 16 H -0.136 1.136 17 C -0.107 4.107 18 N -0.366 5.366 19 C -0.174 4.174 20 C 0.007 3.993 21 N -0.380 5.380 22 H 0.109 0.891 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.142 0.858 26 H 0.157 0.843 27 H 0.149 0.851 28 H 0.071 0.929 29 H 0.028 0.972 30 H 0.123 0.877 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.111 0.889 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.524 4.806 -10.060 12.917 hybrid contribution -0.455 -1.914 -0.107 1.970 sum 6.069 2.892 -10.166 12.188 Atomic orbital electron populations 1.21302 0.92444 1.00813 1.02560 1.19581 0.95831 0.92294 0.96094 1.20913 0.94813 0.96973 1.08588 1.20952 0.93870 0.97664 0.98873 1.20752 0.99686 0.91100 1.11937 1.17846 0.90944 0.86885 0.95648 1.19143 0.91352 0.95157 1.04739 1.17177 0.91173 0.89595 0.92627 1.20892 1.33739 1.04698 0.92943 0.96035 1.25743 0.94173 1.00720 0.96933 1.70106 1.33825 1.27786 1.26538 0.86588 0.75224 0.79204 0.82879 1.20841 1.24654 1.13584 1.23351 0.98900 0.98444 0.90024 1.58815 1.21537 1.51494 1.04757 1.22435 0.97150 0.98722 0.99142 1.21362 0.93081 0.86416 0.98416 1.44415 1.10445 1.03355 1.79794 0.89056 0.92085 0.92607 0.85767 0.84276 0.85109 0.92890 0.97157 0.87652 0.85534 0.84778 0.93746 0.91518 0.94625 0.88938 0.75778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 7.69 71.24 0.55 -3.78 16 2 C -0.04 -1.48 5.47 -19.83 -0.11 -1.59 16 3 C -0.19 -6.71 9.65 22.26 0.21 -6.49 16 4 C -0.10 -3.01 10.05 22.24 0.22 -2.78 16 5 C -0.21 -7.05 9.88 22.42 0.22 -6.82 16 6 C 0.19 7.22 6.48 38.14 0.25 7.46 16 7 C -0.10 -4.21 4.12 -19.75 -0.08 -4.29 16 8 C 0.10 4.19 0.12 -53.76 -0.01 4.19 16 9 C -0.48 -26.41 6.47 25.60 0.17 -26.24 16 10 H 0.02 1.37 7.98 -2.91 -0.02 1.35 16 11 C 0.02 1.20 5.36 84.66 0.45 1.65 16 12 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 13 Si 0.93 42.62 23.19 68.60 1.59 44.21 16 14 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 15 H -0.32 -15.06 7.11 99.48 0.71 -14.35 16 16 H -0.21 -8.49 4.16 99.48 0.41 -8.07 16 17 C 0.02 0.89 4.27 86.30 0.37 1.26 16 18 N -0.84 -26.81 7.60 -186.72 -1.42 -28.23 16 19 C -0.14 -5.43 3.85 30.69 0.12 -5.31 16 20 C 0.13 4.88 7.01 86.44 0.61 5.49 16 21 N -0.75 -25.22 5.80 -337.69 -1.96 -27.17 16 22 H 0.09 3.12 5.64 -2.39 -0.01 3.11 16 23 H 0.06 2.72 5.20 -2.39 -0.01 2.71 16 24 H 0.06 1.83 7.97 -2.39 -0.02 1.81 16 25 H 0.12 3.70 8.02 -2.90 -0.02 3.68 16 26 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 27 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 29 H 0.01 0.44 4.22 -2.39 -0.01 0.43 16 30 H 0.11 4.34 3.27 -6.29 -0.02 4.32 16 31 H 0.33 10.17 7.46 -89.70 -0.67 9.50 16 32 H 0.34 9.01 9.08 -89.70 -0.81 8.20 16 33 H 0.04 1.84 1.88 -2.39 0.00 1.84 16 34 H 0.07 2.38 6.61 -2.39 -0.02 2.37 16 35 H 0.04 1.57 7.39 -2.39 -0.02 1.55 16 36 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.41 10.79 8.86 -92.71 -0.82 9.97 16 Total: -1.00 -65.30 265.49 0.01 -65.29 By element: Atomic # 1 Polarization: 42.00 SS G_CDS: -1.47 Total: 40.53 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 2.97 Total: -37.27 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -3.08 Total: -112.76 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.59 Total: 44.21 kcal Total: -65.30 0.01 -65.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.448 kcal (2) G-P(sol) polarization free energy of solvation -65.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds