Wall clock time and date at job start Mon Mar 30 2020 03:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38169 * 119.84840 * 2 1 4 4 C 1.38266 * 120.16042 * 179.97438 * 3 2 1 5 5 C 1.38061 * 119.91134 * 359.88786 * 4 3 2 6 6 C 1.39032 * 120.03339 * 0.04753 * 5 4 3 7 7 C 1.38457 * 119.84506 * 179.72416 * 2 1 3 8 8 C 1.50597 * 118.93819 * 0.83272 * 7 2 1 9 9 C 1.50704 * 109.48162 * 79.83388 * 8 7 2 10 10 H 1.07997 * 119.99617 * 6.02600 * 9 8 7 11 11 C 1.37878 * 119.99648 * 186.03394 * 9 8 7 12 12 N 1.31512 * 120.00605 * 354.84979 * 11 9 8 13 13 Si 1.86807 * 119.99772 * 174.85476 * 11 9 8 14 14 H 1.48504 * 109.46871 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46973 * 119.99537 * 13 11 9 16 16 H 1.48500 * 109.46890 * 239.99888 * 13 11 9 17 17 C 1.53003 * 109.01949 * 320.31079 * 8 7 2 18 18 N 1.46899 * 109.46843 * 309.00494 * 17 8 7 19 19 C 1.52859 * 110.41957 * 200.21847 * 8 7 2 20 20 C 1.53428 * 108.84716 * 308.45673 * 19 8 7 21 21 N 1.39916 * 119.14091 * 180.23319 * 6 5 4 22 22 H 1.09005 * 109.47442 * 17.14219 * 1 2 3 23 23 H 1.09001 * 109.47435 * 137.14591 * 1 2 3 24 24 H 1.09005 * 109.47179 * 257.14482 * 1 2 3 25 25 H 1.08004 * 119.91998 * 359.95000 * 3 2 1 26 26 H 1.08003 * 120.04355 * 179.87367 * 4 3 2 27 27 H 1.08004 * 119.98181 * 180.02562 * 5 4 3 28 28 H 0.96993 * 120.00346 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.46733 * 69.00159 * 17 8 7 30 30 H 1.08993 * 109.47414 * 189.00227 * 17 8 7 31 31 H 1.00905 * 110.99789 * 184.86526 * 18 17 8 32 32 H 1.00907 * 111.00158 * 308.81489 * 18 17 8 33 33 H 1.09000 * 109.57042 * 188.64505 * 19 8 7 34 34 H 1.08995 * 109.57333 * 68.26697 * 19 8 7 35 35 H 1.09004 * 109.78917 * 303.61838 * 20 19 8 36 36 H 1.08997 * 109.83953 * 182.80492 * 20 19 8 37 37 H 0.97003 * 120.54246 * 13.44965 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1946 1.1984 0.0000 4 6 3.5773 1.2059 0.0005 5 6 4.2722 0.0130 0.0034 6 6 3.5825 -1.1942 0.0048 7 6 2.1960 -1.2009 0.0058 8 6 1.4156 -2.4889 -0.0072 9 6 0.9583 -2.7853 -1.4122 10 1 1.2888 -2.1626 -2.2303 11 6 0.1180 -3.8516 -1.6531 12 7 -0.2035 -4.6697 -0.6749 13 14 -0.5639 -4.1342 -3.3691 14 1 -0.0547 -3.0809 -4.2838 15 1 -0.1321 -5.4676 -3.8599 16 1 -2.0473 -4.0785 -3.3277 17 6 0.1937 -2.3406 0.9016 18 7 0.6178 -1.8338 2.2135 19 6 2.2826 -3.6428 0.4961 20 6 3.6032 -3.6478 -0.2849 21 7 4.3055 -2.3920 0.0127 22 1 -0.3634 0.9820 -0.3029 23 1 -0.3634 -0.7534 -0.6989 24 1 -0.3634 -0.2287 1.0019 25 1 1.6508 2.1316 -0.0008 26 1 4.1129 2.1438 -0.0015 27 1 5.3523 0.0175 0.0043 28 1 -0.7944 -5.4199 -0.8444 29 1 -0.5107 -1.6407 0.4521 30 1 -0.2872 -3.3109 1.0251 31 1 -0.1586 -1.8020 2.8572 32 1 1.3749 -2.3864 2.5872 33 1 1.7613 -4.5870 0.3382 34 1 2.4870 -3.5096 1.5584 35 1 3.3996 -3.7130 -1.3538 36 1 4.2140 -4.4951 0.0266 37 1 5.2549 -2.3934 0.2114 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:19 Heat of formation + Delta-G solvation = 53.919316 kcal Electronic energy + Delta-G solvation = -19122.175436 eV Core-core repulsion = 16478.833684 eV Total energy + Delta-G solvation = -2643.341752 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.60869 -35.95416 -35.18692 -32.33127 -31.08329 -29.61877 -29.28146 -26.42200 -25.39333 -23.78802 -22.26130 -20.89185 -20.18606 -18.39592 -16.39195 -15.87309 -15.33530 -14.88667 -14.65638 -14.19799 -13.85676 -13.41310 -12.97015 -12.52157 -12.50374 -12.12186 -11.95464 -11.61200 -11.34702 -11.21713 -11.00294 -10.83340 -10.68584 -10.55157 -10.15948 -9.95421 -9.35569 -9.15691 -8.94297 -8.72402 -8.39889 -7.44224 -7.35605 -6.42542 -6.00505 -4.13062 2.46782 2.60948 3.23844 3.33646 3.39499 4.36459 4.39106 4.89214 5.17747 5.72854 5.76089 5.82747 5.96025 6.10020 6.23579 6.30546 6.33701 6.46905 6.59298 6.65714 6.76679 6.87381 6.92825 7.07975 7.13777 7.18991 7.30102 7.39303 7.46751 7.59800 7.66128 7.85125 7.95437 8.09264 8.19294 8.31467 8.44189 8.50662 8.68617 8.90412 9.51111 10.94471 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.010391 C = 0.009686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.340763 B = 2693.952744 C = 2889.964830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.017 4.017 3 C -0.187 4.187 4 C -0.102 4.102 5 C -0.215 4.215 6 C 0.206 3.794 7 C -0.078 4.078 8 C 0.120 3.880 9 C -0.493 4.493 10 H 0.057 0.943 11 C 0.066 3.934 12 N -0.887 5.887 13 Si 0.886 3.114 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.284 1.284 17 C 0.030 3.970 18 N -0.853 5.853 19 C -0.122 4.122 20 C 0.132 3.868 21 N -0.758 5.758 22 H 0.031 0.969 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.259 0.741 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.315 0.685 32 H 0.325 0.675 33 H 0.098 0.902 34 H 0.024 0.976 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 3.924 2.908 6.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.018 4.018 3 C -0.207 4.207 4 C -0.121 4.121 5 C -0.238 4.238 6 C 0.105 3.895 7 C -0.082 4.082 8 C 0.119 3.881 9 C -0.531 4.531 10 H 0.075 0.925 11 C -0.135 4.135 12 N -0.526 5.526 13 Si 0.714 3.286 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.099 4.099 18 N -0.381 5.381 19 C -0.160 4.160 20 C 0.008 3.992 21 N -0.389 5.389 22 H 0.050 0.950 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.717 4.250 2.473 6.164 hybrid contribution -0.112 -1.169 -0.481 1.269 sum 3.605 3.080 1.992 5.143 Atomic orbital electron populations 1.21432 0.92698 1.00087 1.03304 1.19360 0.95339 0.91673 0.95454 1.20598 0.93876 0.96854 1.09399 1.20481 0.94108 0.96240 1.01237 1.20392 0.98049 0.91823 1.13491 1.17631 0.91247 0.85456 0.95203 1.19524 0.90494 0.96363 1.01799 1.16953 0.90054 0.86648 0.94462 1.21083 1.27858 1.12088 0.92093 0.92518 1.24916 0.96242 0.95640 0.96691 1.69830 1.36122 1.15482 1.31117 0.86611 0.78892 0.78041 0.85018 1.19716 1.21182 1.20994 1.22953 0.99427 1.00036 0.87480 1.59106 1.12160 1.60684 1.06102 1.21939 0.94940 1.03862 0.95283 1.21515 0.93646 0.83728 1.00294 1.44679 1.09636 1.04705 1.79907 0.94974 0.89267 0.89634 0.88080 0.87956 0.88093 0.93073 0.89117 0.92649 0.87499 0.86289 0.88375 0.95694 0.91967 0.93182 0.78204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 7.69 36.00 0.28 -2.07 16 2 C -0.02 -0.37 5.44 -104.57 -0.57 -0.94 16 3 C -0.19 -3.62 9.65 -39.60 -0.38 -4.00 16 4 C -0.10 -1.86 10.05 -39.64 -0.40 -2.26 16 5 C -0.21 -4.06 9.88 -39.35 -0.39 -4.45 16 6 C 0.21 4.30 6.48 -83.72 -0.54 3.76 16 7 C -0.08 -1.72 4.10 -104.44 -0.43 -2.15 16 8 C 0.12 2.73 0.11 -156.93 -0.02 2.71 16 9 C -0.49 -12.44 5.86 -34.44 -0.20 -12.64 16 10 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 11 C 0.07 1.66 5.10 -17.82 -0.09 1.57 16 12 N -0.89 -22.60 9.44 55.43 0.52 -22.08 16 13 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.03 0.65 4.26 -3.82 -0.02 0.64 16 18 N -0.85 -16.28 7.54 -10.37 -0.08 -16.36 16 19 C -0.12 -2.68 4.66 -26.58 -0.12 -2.80 16 20 C 0.13 2.64 7.01 -3.59 -0.03 2.61 16 21 N -0.76 -14.26 5.80 -58.08 -0.34 -14.60 16 22 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 23 H 0.09 1.93 5.30 -51.93 -0.28 1.66 16 24 H 0.09 1.65 5.49 -51.93 -0.28 1.36 16 25 H 0.10 1.73 8.01 -52.48 -0.42 1.31 16 26 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 27 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 29 H 0.09 2.01 3.35 -54.60 -0.18 1.83 16 30 H 0.06 1.35 6.17 -51.93 -0.32 1.03 16 31 H 0.32 5.32 9.08 -39.29 -0.36 4.96 16 32 H 0.32 6.28 7.22 -39.29 -0.28 5.99 16 33 H 0.10 2.38 6.11 -51.93 -0.32 2.07 16 34 H 0.02 0.53 6.48 -51.93 -0.34 0.19 16 35 H 0.06 1.37 7.39 -51.93 -0.38 0.99 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.39 6.09 8.86 -40.82 -0.36 5.73 16 LS Contribution 275.62 15.07 4.15 4.15 Total: -1.00 -26.14 275.62 -8.41 -34.55 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -4.75 Total: 19.17 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -2.91 Total: -20.02 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.11 Total: -53.04 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.14 -8.41 -34.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.467 kcal (2) G-P(sol) polarization free energy of solvation -26.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds