Wall clock time and date at job start Mon Mar 30 2020 03:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38169 * 119.84840 * 2 1 4 4 C 1.38266 * 120.16042 * 179.97438 * 3 2 1 5 5 C 1.38061 * 119.91134 * 359.88786 * 4 3 2 6 6 C 1.39032 * 120.03339 * 0.04753 * 5 4 3 7 7 C 1.38457 * 119.84506 * 179.72416 * 2 1 3 8 8 C 1.50597 * 118.93819 * 0.83272 * 7 2 1 9 9 C 1.50704 * 109.48162 * 79.83388 * 8 7 2 10 10 H 1.07997 * 119.99617 * 6.02600 * 9 8 7 11 11 C 1.37878 * 119.99648 * 186.03394 * 9 8 7 12 12 N 1.31512 * 120.00605 * 354.84979 * 11 9 8 13 13 Si 1.86807 * 119.99772 * 174.85476 * 11 9 8 14 14 H 1.48504 * 109.46871 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46973 * 119.99537 * 13 11 9 16 16 H 1.48500 * 109.46890 * 239.99888 * 13 11 9 17 17 C 1.53003 * 109.01949 * 320.31079 * 8 7 2 18 18 N 1.46899 * 109.46843 * 309.00494 * 17 8 7 19 19 C 1.52859 * 110.41957 * 200.21847 * 8 7 2 20 20 C 1.53428 * 108.84716 * 308.45673 * 19 8 7 21 21 N 1.39916 * 119.14091 * 180.23319 * 6 5 4 22 22 H 1.09005 * 109.47442 * 17.14219 * 1 2 3 23 23 H 1.09001 * 109.47435 * 137.14591 * 1 2 3 24 24 H 1.09005 * 109.47179 * 257.14482 * 1 2 3 25 25 H 1.08004 * 119.91998 * 359.95000 * 3 2 1 26 26 H 1.08003 * 120.04355 * 179.87367 * 4 3 2 27 27 H 1.08004 * 119.98181 * 180.02562 * 5 4 3 28 28 H 0.96993 * 120.00346 * 180.02562 * 12 11 9 29 29 H 1.09002 * 109.46733 * 69.00159 * 17 8 7 30 30 H 1.08993 * 109.47414 * 189.00227 * 17 8 7 31 31 H 1.00905 * 110.99789 * 184.86526 * 18 17 8 32 32 H 1.00907 * 111.00158 * 308.81489 * 18 17 8 33 33 H 1.09000 * 109.57042 * 188.64505 * 19 8 7 34 34 H 1.08995 * 109.57333 * 68.26697 * 19 8 7 35 35 H 1.09004 * 109.78917 * 303.61838 * 20 19 8 36 36 H 1.08997 * 109.83953 * 182.80492 * 20 19 8 37 37 H 0.97003 * 120.54246 * 13.44965 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1946 1.1984 0.0000 4 6 3.5773 1.2059 0.0005 5 6 4.2722 0.0130 0.0034 6 6 3.5825 -1.1942 0.0048 7 6 2.1960 -1.2009 0.0058 8 6 1.4156 -2.4889 -0.0072 9 6 0.9583 -2.7853 -1.4122 10 1 1.2888 -2.1626 -2.2303 11 6 0.1180 -3.8516 -1.6531 12 7 -0.2035 -4.6697 -0.6749 13 14 -0.5639 -4.1342 -3.3691 14 1 -0.0547 -3.0809 -4.2838 15 1 -0.1321 -5.4676 -3.8599 16 1 -2.0473 -4.0785 -3.3277 17 6 0.1937 -2.3406 0.9016 18 7 0.6178 -1.8338 2.2135 19 6 2.2826 -3.6428 0.4961 20 6 3.6032 -3.6478 -0.2849 21 7 4.3055 -2.3920 0.0127 22 1 -0.3634 0.9820 -0.3029 23 1 -0.3634 -0.7534 -0.6989 24 1 -0.3634 -0.2287 1.0019 25 1 1.6508 2.1316 -0.0008 26 1 4.1129 2.1438 -0.0015 27 1 5.3523 0.0175 0.0043 28 1 -0.7944 -5.4199 -0.8444 29 1 -0.5107 -1.6407 0.4521 30 1 -0.2872 -3.3109 1.0251 31 1 -0.1586 -1.8020 2.8572 32 1 1.3749 -2.3864 2.5872 33 1 1.7613 -4.5870 0.3382 34 1 2.4870 -3.5096 1.5584 35 1 3.3996 -3.7130 -1.3538 36 1 4.2140 -4.4951 0.0266 37 1 5.2549 -2.3934 0.2114 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122388.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:18 Heat of formation + Delta-G solvation = 37.757814 kcal Electronic energy + Delta-G solvation = -19122.876251 eV Core-core repulsion = 16478.833684 eV Total energy + Delta-G solvation = -2644.042567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19527 -37.56948 -36.75136 -34.18819 -32.65330 -31.27444 -30.84768 -28.07578 -27.07538 -25.55034 -23.86795 -22.49467 -21.74669 -20.11980 -18.14421 -17.42805 -16.97723 -16.66469 -16.25383 -15.85899 -15.44846 -15.06851 -14.53798 -14.12420 -14.07354 -13.89353 -13.52615 -13.22165 -12.97798 -12.87085 -12.83948 -12.57198 -12.41044 -12.14202 -11.98592 -11.53113 -11.03528 -10.93090 -10.69886 -10.35046 -10.20929 -9.08315 -8.94406 -8.06221 -7.81594 -6.10537 0.95223 1.08842 1.38791 1.45006 1.53707 2.46783 2.91142 3.22078 3.35569 4.15537 4.29964 4.38013 4.47023 4.55821 4.61821 4.77058 4.81683 4.83019 5.05300 5.07605 5.19489 5.21950 5.31022 5.36786 5.50336 5.59111 5.65646 5.71028 5.78330 5.88553 6.03998 6.11984 6.30881 6.42011 6.49880 6.66152 6.77979 6.88217 7.01855 7.29389 7.54719 8.98744 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.022193 B = 0.010391 C = 0.009686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.340763 B = 2693.952744 C = 2889.964830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.038 4.038 3 C -0.195 4.195 4 C -0.098 4.098 5 C -0.216 4.216 6 C 0.185 3.815 7 C -0.107 4.107 8 C 0.119 3.881 9 C -0.497 4.497 10 H 0.031 0.969 11 C 0.034 3.966 12 N -0.898 5.898 13 Si 0.932 3.068 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.043 3.957 18 N -0.842 5.842 19 C -0.116 4.116 20 C 0.138 3.862 21 N -0.750 5.750 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.086 0.914 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.128 0.872 28 H 0.258 0.742 29 H 0.087 0.913 30 H 0.026 0.974 31 H 0.330 0.670 32 H 0.325 0.675 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.079 0.921 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 5.320 3.291 7.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.038 4.038 3 C -0.215 4.215 4 C -0.116 4.116 5 C -0.238 4.238 6 C 0.083 3.917 7 C -0.111 4.111 8 C 0.118 3.882 9 C -0.536 4.536 10 H 0.050 0.950 11 C -0.165 4.165 12 N -0.538 5.538 13 Si 0.760 3.240 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.207 1.207 17 C -0.087 4.087 18 N -0.371 5.371 19 C -0.155 4.155 20 C 0.013 3.987 21 N -0.383 5.383 22 H 0.072 0.928 23 H 0.081 0.919 24 H 0.105 0.895 25 H 0.141 0.859 26 H 0.156 0.844 27 H 0.146 0.854 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.934 5.651 2.869 8.032 hybrid contribution -0.460 -1.534 -0.591 1.707 sum 4.474 4.117 2.277 6.493 Atomic orbital electron populations 1.21286 0.92433 1.00376 1.02659 1.19605 0.95865 0.92264 0.96100 1.20906 0.94754 0.96975 1.08845 1.20915 0.93892 0.97530 0.99282 1.20735 0.99511 0.91233 1.12339 1.17917 0.91199 0.86795 0.95767 1.19570 0.91413 0.96189 1.03942 1.16870 0.90525 0.87658 0.93120 1.21107 1.27967 1.11639 0.92871 0.95034 1.25357 0.96613 0.95670 0.98905 1.69937 1.36329 1.15568 1.31929 0.85906 0.78325 0.77523 0.82269 1.20400 1.21024 1.20744 1.22694 0.98987 0.98304 0.88694 1.59007 1.12660 1.60029 1.05387 1.21799 0.95759 1.02261 0.95716 1.21340 0.93489 0.85450 0.98372 1.44530 1.10318 1.03735 1.79718 0.92844 0.91943 0.89535 0.85918 0.84446 0.85423 0.93241 0.89565 0.95556 0.85946 0.86255 0.90999 0.95331 0.94640 0.90254 0.76269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.34 7.69 71.23 0.55 -3.80 16 2 C -0.04 -1.54 5.44 -19.83 -0.11 -1.65 16 3 C -0.19 -7.00 9.65 22.26 0.21 -6.79 16 4 C -0.10 -3.21 10.05 22.23 0.22 -2.99 16 5 C -0.22 -7.49 9.88 22.42 0.22 -7.26 16 6 C 0.18 7.42 6.48 38.14 0.25 7.67 16 7 C -0.11 -4.68 4.10 -19.75 -0.08 -4.76 16 8 C 0.12 5.50 0.11 -53.75 -0.01 5.50 16 9 C -0.50 -25.77 5.86 25.60 0.15 -25.62 16 10 H 0.03 1.75 7.75 -2.91 -0.02 1.73 16 11 C 0.03 1.75 5.10 84.66 0.43 2.18 16 12 N -0.90 -46.86 9.44 21.45 0.20 -46.66 16 13 Si 0.93 42.22 29.54 68.60 2.03 44.25 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 C 0.04 1.90 4.26 86.30 0.37 2.27 16 18 N -0.84 -31.81 7.54 -186.72 -1.41 -33.22 16 19 C -0.12 -5.18 4.66 30.69 0.14 -5.04 16 20 C 0.14 5.45 7.01 86.44 0.61 6.05 16 21 N -0.75 -27.02 5.80 -337.68 -1.96 -28.98 16 22 H 0.05 1.78 7.96 -2.38 -0.02 1.77 16 23 H 0.06 2.76 5.30 -2.39 -0.01 2.75 16 24 H 0.09 3.29 5.49 -2.38 -0.01 3.28 16 25 H 0.12 3.78 8.01 -2.91 -0.02 3.76 16 26 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 27 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.26 13.06 8.31 -92.71 -0.77 12.28 16 29 H 0.09 3.91 3.35 -4.90 -0.02 3.89 16 30 H 0.03 1.32 6.17 -2.39 -0.01 1.30 16 31 H 0.33 10.86 9.08 -89.69 -0.81 10.05 16 32 H 0.33 12.39 7.22 -89.69 -0.65 11.74 16 33 H 0.07 3.57 6.11 -2.39 -0.01 3.56 16 34 H 0.03 1.21 6.48 -2.39 -0.02 1.20 16 35 H 0.04 1.58 7.39 -2.38 -0.02 1.57 16 36 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.40 11.69 8.86 -92.71 -0.82 10.87 16 Total: -1.00 -56.01 275.62 0.65 -55.36 By element: Atomic # 1 Polarization: 44.66 SS G_CDS: -1.17 Total: 43.49 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 2.96 Total: -34.24 kcal Atomic # 7 Polarization: -105.69 SS G_CDS: -3.16 Total: -108.86 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -56.01 0.65 -55.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122388.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.116 kcal (2) G-P(sol) polarization free energy of solvation -56.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds