Wall clock time and date at job start Mon Mar 30 2020 04:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48527 * 110.99867 * 2 1 4 4 C 1.54944 * 103.37628 * 200.36426 * 3 2 1 5 5 C 1.54601 * 102.91995 * 37.32905 * 4 3 2 6 6 H 1.08997 * 110.30206 * 97.05728 * 5 4 3 7 7 C 1.50691 * 110.30661 * 219.12576 * 5 4 3 8 8 H 1.08003 * 119.99886 * 114.23902 * 7 5 4 9 9 C 1.37878 * 120.00369 * 294.23297 * 7 5 4 10 10 N 1.31515 * 119.99698 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00124 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47310 * 90.00497 * 11 9 7 13 13 H 1.48501 * 109.47376 * 210.00246 * 11 9 7 14 14 H 1.48501 * 109.47410 * 330.00403 * 11 9 7 15 15 C 1.48065 * 111.16060 * 242.60265 * 2 1 3 16 16 H 1.09003 * 109.91935 * 26.22894 * 15 2 1 17 17 C 1.53000 * 109.99699 * 265.08130 * 15 2 1 18 18 C 1.50697 * 109.47066 * 173.05913 * 17 15 2 19 19 C 1.38231 * 119.62046 * 127.22410 * 18 17 15 20 20 C 1.38624 * 119.16281 * 179.75319 * 19 18 17 21 21 C 1.38681 * 118.42006 * 0.50707 * 20 19 18 22 22 C 1.38183 * 119.16072 * 359.72970 * 21 20 19 23 23 N 1.31861 * 119.61873 * 307.49274 * 18 17 15 24 24 H 1.08999 * 109.47348 * 61.75545 * 1 2 3 25 25 H 1.09004 * 109.47292 * 181.75809 * 1 2 3 26 26 H 1.08997 * 109.47114 * 301.75382 * 1 2 3 27 27 H 1.08998 * 110.66926 * 81.85118 * 3 2 1 28 28 H 1.09001 * 110.67018 * 318.87859 * 3 2 1 29 29 H 1.08998 * 110.72215 * 155.69111 * 4 3 2 30 30 H 1.09004 * 110.72173 * 278.79635 * 4 3 2 31 31 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.46721 * 293.05304 * 17 15 2 33 33 H 1.09000 * 109.47471 * 53.05624 * 17 15 2 34 34 H 1.08002 * 120.41542 * 359.97438 * 19 18 17 35 35 H 1.07994 * 120.79113 * 180.22078 * 20 19 18 36 36 H 1.07994 * 120.41852 * 179.71509 * 21 20 19 37 37 H 1.08002 * 119.61533 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4490 1.2149 -0.5246 5 6 3.3000 0.1091 -1.5947 6 1 3.2146 0.5521 -2.5869 7 6 4.4763 -0.8314 -1.5421 8 1 4.3318 -1.8609 -1.2493 9 6 5.7368 -0.3778 -1.8680 10 7 5.9128 0.8759 -2.2243 11 14 7.1947 -1.5439 -1.8035 12 1 7.3610 -2.2021 -3.1244 13 1 8.4249 -0.7806 -1.4726 14 1 6.9575 -2.5760 -0.7625 15 6 2.0035 -0.6354 -1.2259 16 1 1.2802 -0.5453 -2.0365 17 6 2.3073 -2.1112 -0.9605 18 6 2.6874 -2.7862 -2.2531 19 6 3.8666 -3.5036 -2.3283 20 6 4.2044 -4.1250 -3.5205 21 6 3.3449 -3.9923 -4.6007 22 6 2.1857 -3.2549 -4.4521 23 7 1.8939 -2.6813 -3.3010 24 1 -0.3634 0.4863 -0.9053 25 1 -0.3634 -1.0272 0.0315 26 1 -0.3633 0.5408 0.8738 27 1 2.0041 1.7976 1.0095 28 1 1.4219 2.0211 -0.6707 29 1 3.8088 2.1405 -0.9738 30 1 4.1139 0.8927 0.2769 31 1 6.7997 1.1951 -2.4532 32 1 3.1326 -2.1906 -0.2528 33 1 1.4237 -2.5950 -0.5441 34 1 4.5148 -3.5819 -1.4679 35 1 5.1176 -4.6950 -3.6074 36 1 3.5787 -4.4590 -5.5461 37 1 1.5113 -3.1464 -5.2886 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:51 Heat of formation + Delta-G solvation = 54.020348 kcal Electronic energy + Delta-G solvation = -18583.999271 eV Core-core repulsion = 15940.661900 eV Total energy + Delta-G solvation = -2643.337370 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.79991 -38.04297 -33.49679 -32.51449 -31.69826 -30.47784 -28.82918 -26.05529 -24.64002 -23.80810 -22.67673 -21.33994 -20.03414 -18.77762 -16.44088 -16.21919 -15.58170 -14.99250 -14.73742 -14.37662 -14.25945 -13.58421 -13.26774 -12.77513 -12.64547 -12.44434 -12.17544 -11.86783 -11.40984 -11.18678 -11.06939 -10.89647 -10.62254 -10.53306 -10.32518 -9.90316 -9.61579 -9.21294 -9.18054 -8.81705 -8.61833 -8.36806 -7.98972 -7.63893 -5.98078 -3.96266 1.79988 1.94585 3.28097 3.34271 3.36183 4.41178 4.44333 4.78800 5.01408 5.34841 5.36947 5.46036 5.65821 5.70088 5.77391 5.83721 5.92804 6.09266 6.17878 6.21030 6.26321 6.29174 6.35069 6.47545 6.53602 6.70221 6.78897 6.81860 7.01921 7.19151 7.26727 7.40022 7.54162 7.65890 7.89168 7.94600 8.09827 8.48022 8.68747 9.01210 9.65093 11.13046 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.012805 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.816750 B = 2186.150342 C = 3509.856324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.521 5.521 3 C 0.030 3.970 4 C -0.094 4.094 5 C 0.047 3.953 6 H 0.027 0.973 7 C -0.516 4.516 8 H 0.084 0.916 9 C 0.065 3.935 10 N -0.890 5.890 11 Si 0.874 3.126 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.081 3.919 16 H 0.044 0.956 17 C -0.044 4.044 18 C 0.179 3.821 19 C -0.139 4.139 20 C -0.086 4.086 21 C -0.192 4.192 22 C 0.091 3.909 23 N -0.489 5.489 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.028 0.972 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.257 0.743 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 -6.178 -0.031 8.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.245 5.245 3 C -0.098 4.098 4 C -0.132 4.132 5 C 0.028 3.972 6 H 0.045 0.955 7 C -0.554 4.554 8 H 0.101 0.899 9 C -0.137 4.137 10 N -0.529 5.529 11 Si 0.702 3.298 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.196 1.196 15 C -0.027 4.027 16 H 0.062 0.938 17 C -0.082 4.082 18 C 0.041 3.959 19 C -0.159 4.159 20 C -0.112 4.112 21 C -0.212 4.212 22 C -0.065 4.065 23 N -0.199 5.199 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.578 -5.853 0.451 8.816 hybrid contribution 1.557 -0.437 -1.023 1.913 sum -5.021 -6.290 -0.572 8.069 Atomic orbital electron populations 1.22436 0.89792 1.01148 0.99488 1.64535 1.06091 1.15230 1.38673 1.23306 0.98254 0.88968 0.99246 1.22431 0.91684 0.99869 0.99233 1.19469 0.90628 0.92814 0.94334 0.95455 1.21845 0.91424 0.97314 1.44784 0.89876 1.24937 0.98625 0.94710 0.95399 1.69983 1.22215 1.14478 1.46196 0.86873 0.83143 0.81457 0.78346 1.20708 1.21422 1.19650 1.22437 0.98031 0.93270 0.88948 0.93821 1.20449 1.01139 0.94586 0.92020 1.21094 0.89656 0.90951 0.94241 1.21895 0.97446 0.97714 0.98870 1.21407 0.98618 0.97913 0.93254 1.21862 0.96951 1.03081 0.99347 1.22480 0.95224 0.93737 0.95089 1.67405 1.33560 1.19356 0.99609 0.96229 0.92091 0.92442 0.91872 0.95389 0.92509 0.91984 0.93320 0.88608 0.92540 0.85127 0.85997 0.86032 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.43 60.06 0.57 0.90 16 2 N -0.52 -10.20 5.19 -230.65 -1.20 -11.39 16 3 C 0.03 0.59 6.55 -1.90 -0.01 0.58 16 4 C -0.09 -2.18 5.84 -24.86 -0.15 -2.33 16 5 C 0.05 1.15 2.74 -90.42 -0.25 0.90 16 6 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 7 C -0.52 -13.21 6.25 -34.44 -0.22 -13.43 16 8 H 0.08 2.00 1.77 -52.48 -0.09 1.90 16 9 C 0.06 1.74 5.35 -17.82 -0.10 1.64 16 10 N -0.89 -25.38 12.72 55.43 0.71 -24.67 16 11 Si 0.87 20.67 29.54 -169.99 -5.02 15.65 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 C 0.08 1.74 2.44 -66.55 -0.16 1.57 16 16 H 0.04 0.98 7.22 -51.93 -0.37 0.60 16 17 C -0.04 -0.87 5.00 -27.88 -0.14 -1.01 16 18 C 0.18 3.60 4.96 -82.58 -0.41 3.19 16 19 C -0.14 -2.67 7.86 -39.44 -0.31 -2.98 16 20 C -0.09 -1.48 10.18 -39.28 -0.40 -1.88 16 21 C -0.19 -3.07 10.11 -39.44 -0.40 -3.47 16 22 C 0.09 1.55 11.18 -17.55 -0.20 1.36 16 23 N -0.49 -9.71 9.66 -9.47 -0.09 -9.81 16 24 H 0.02 0.31 7.98 -51.93 -0.41 -0.10 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.03 0.53 8.01 -51.93 -0.42 0.12 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.06 1.53 7.86 -51.93 -0.41 1.12 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.10 1.99 6.17 -51.93 -0.32 1.67 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.13 2.44 7.07 -52.49 -0.37 2.07 16 35 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 293.75 15.07 4.43 4.43 Total: -1.00 -28.84 293.75 -8.68 -37.53 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.34 Total: 3.22 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -2.17 Total: -14.94 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.58 Total: -45.87 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.84 -8.68 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.546 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds