Wall clock time and date at job start Mon Mar 30 2020 04:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.48527 * 110.99867 * 2 1 4 4 C 1.54944 * 103.37628 * 200.36426 * 3 2 1 5 5 C 1.54601 * 102.91995 * 37.32905 * 4 3 2 6 6 H 1.08997 * 110.30206 * 97.05728 * 5 4 3 7 7 C 1.50691 * 110.30661 * 219.12576 * 5 4 3 8 8 H 1.08003 * 119.99886 * 114.23902 * 7 5 4 9 9 C 1.37878 * 120.00369 * 294.23297 * 7 5 4 10 10 N 1.31515 * 119.99698 * 0.02562 * 9 7 5 11 11 Si 1.86797 * 120.00124 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47310 * 90.00497 * 11 9 7 13 13 H 1.48501 * 109.47376 * 210.00246 * 11 9 7 14 14 H 1.48501 * 109.47410 * 330.00403 * 11 9 7 15 15 C 1.48065 * 111.16060 * 242.60265 * 2 1 3 16 16 H 1.09003 * 109.91935 * 26.22894 * 15 2 1 17 17 C 1.53000 * 109.99699 * 265.08130 * 15 2 1 18 18 C 1.50697 * 109.47066 * 173.05913 * 17 15 2 19 19 C 1.38231 * 119.62046 * 127.22410 * 18 17 15 20 20 C 1.38624 * 119.16281 * 179.75319 * 19 18 17 21 21 C 1.38681 * 118.42006 * 0.50707 * 20 19 18 22 22 C 1.38183 * 119.16072 * 359.72970 * 21 20 19 23 23 N 1.31861 * 119.61873 * 307.49274 * 18 17 15 24 24 H 1.08999 * 109.47348 * 61.75545 * 1 2 3 25 25 H 1.09004 * 109.47292 * 181.75809 * 1 2 3 26 26 H 1.08997 * 109.47114 * 301.75382 * 1 2 3 27 27 H 1.08998 * 110.66926 * 81.85118 * 3 2 1 28 28 H 1.09001 * 110.67018 * 318.87859 * 3 2 1 29 29 H 1.08998 * 110.72215 * 155.69111 * 4 3 2 30 30 H 1.09004 * 110.72173 * 278.79635 * 4 3 2 31 31 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.46721 * 293.05304 * 17 15 2 33 33 H 1.09000 * 109.47471 * 53.05624 * 17 15 2 34 34 H 1.08002 * 120.41542 * 359.97438 * 19 18 17 35 35 H 1.07994 * 120.79113 * 180.22078 * 20 19 18 36 36 H 1.07994 * 120.41852 * 179.71509 * 21 20 19 37 37 H 1.08002 * 119.61533 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3866 0.0000 4 6 3.4490 1.2149 -0.5246 5 6 3.3000 0.1091 -1.5947 6 1 3.2146 0.5521 -2.5869 7 6 4.4763 -0.8314 -1.5421 8 1 4.3318 -1.8609 -1.2493 9 6 5.7368 -0.3778 -1.8680 10 7 5.9128 0.8759 -2.2243 11 14 7.1947 -1.5439 -1.8035 12 1 7.3610 -2.2021 -3.1244 13 1 8.4249 -0.7806 -1.4726 14 1 6.9575 -2.5760 -0.7625 15 6 2.0035 -0.6354 -1.2259 16 1 1.2802 -0.5453 -2.0365 17 6 2.3073 -2.1112 -0.9605 18 6 2.6874 -2.7862 -2.2531 19 6 3.8666 -3.5036 -2.3283 20 6 4.2044 -4.1250 -3.5205 21 6 3.3449 -3.9923 -4.6007 22 6 2.1857 -3.2549 -4.4521 23 7 1.8939 -2.6813 -3.3010 24 1 -0.3634 0.4863 -0.9053 25 1 -0.3634 -1.0272 0.0315 26 1 -0.3633 0.5408 0.8738 27 1 2.0041 1.7976 1.0095 28 1 1.4219 2.0211 -0.6707 29 1 3.8088 2.1405 -0.9738 30 1 4.1139 0.8927 0.2769 31 1 6.7997 1.1951 -2.4532 32 1 3.1326 -2.1906 -0.2528 33 1 1.4237 -2.5950 -0.5441 34 1 4.5148 -3.5819 -1.4679 35 1 5.1176 -4.6950 -3.6074 36 1 3.5787 -4.4590 -5.5461 37 1 1.5113 -3.1464 -5.2886 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:50 Heat of formation + Delta-G solvation = 36.035141 kcal Electronic energy + Delta-G solvation = -18584.779168 eV Core-core repulsion = 15940.661900 eV Total energy + Delta-G solvation = -2644.117268 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.25717 -39.66234 -35.24121 -34.15931 -33.12057 -32.26436 -30.36214 -27.82874 -26.21437 -25.45783 -24.14116 -22.81377 -21.77729 -20.54693 -18.25864 -17.62369 -17.14539 -16.64400 -16.19903 -16.15671 -15.86428 -15.06113 -14.84404 -14.47285 -14.08058 -13.97257 -13.60833 -13.50362 -13.18794 -12.80630 -12.74708 -12.56317 -12.40644 -12.02077 -11.99933 -11.72755 -11.50607 -11.03172 -10.71486 -10.44506 -10.42142 -10.14732 -9.50300 -9.21243 -8.03576 -6.05797 0.42889 0.58103 1.39957 1.41966 1.49234 2.47659 2.99121 3.28389 3.31232 3.65812 4.05724 4.12980 4.14860 4.25817 4.36603 4.42767 4.45640 4.52408 4.66941 4.73058 4.77126 4.86795 4.89637 5.02324 5.06435 5.07504 5.16041 5.34203 5.37964 5.43473 5.54683 5.67035 5.74151 5.93345 6.02813 6.22089 6.34949 6.48427 6.99609 7.29390 7.58612 9.08102 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015943 B = 0.012805 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.816750 B = 2186.150342 C = 3509.856324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.526 5.526 3 C 0.040 3.960 4 C -0.088 4.088 5 C 0.041 3.959 6 H -0.020 1.020 7 C -0.511 4.511 8 H 0.102 0.898 9 C 0.011 3.989 10 N -0.930 5.930 11 Si 0.927 3.073 12 H -0.276 1.276 13 H -0.297 1.297 14 H -0.252 1.252 15 C 0.093 3.907 16 H 0.031 0.969 17 C -0.037 4.037 18 C 0.154 3.846 19 C -0.161 4.161 20 C -0.092 4.092 21 C -0.184 4.184 22 C 0.079 3.921 23 N -0.514 5.514 24 H 0.018 0.982 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.252 0.748 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 -8.033 0.011 10.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.250 5.250 3 C -0.088 4.088 4 C -0.127 4.127 5 C 0.022 3.978 6 H -0.002 1.002 7 C -0.549 4.549 8 H 0.119 0.881 9 C -0.186 4.186 10 N -0.571 5.571 11 Si 0.753 3.247 12 H -0.202 1.202 13 H -0.223 1.223 14 H -0.175 1.175 15 C -0.015 4.015 16 H 0.049 0.951 17 C -0.075 4.075 18 C 0.016 3.984 19 C -0.181 4.181 20 C -0.117 4.117 21 C -0.204 4.204 22 C -0.077 4.077 23 N -0.225 5.225 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.166 0.834 36 H 0.178 0.822 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.308 -7.730 0.510 10.650 hybrid contribution 1.703 0.125 -1.124 2.045 sum -5.605 -7.605 -0.614 9.467 Atomic orbital electron populations 1.22529 0.87254 1.02421 1.00602 1.64574 1.08467 1.14689 1.37279 1.23223 0.95446 0.89575 1.00515 1.22219 0.94039 0.98249 0.98186 1.19420 0.92654 0.93469 0.92287 1.00232 1.22291 0.91434 0.98250 1.42909 0.88088 1.25677 1.01346 0.95930 0.95695 1.70145 1.22297 1.16398 1.48282 0.86005 0.79684 0.80026 0.78991 1.20160 1.22326 1.17514 1.22191 0.95841 0.94066 0.89442 0.95108 1.20331 1.01339 0.93581 0.92261 1.21116 0.90621 0.92163 0.94474 1.21988 0.97389 0.98783 0.99921 1.21823 0.99714 0.97453 0.92748 1.22300 0.95786 1.01800 1.00510 1.23098 0.96379 0.93227 0.95020 1.67373 1.34283 1.20299 1.00507 0.96339 0.90920 0.89901 0.89388 0.94776 0.94859 0.93717 0.93903 0.89754 0.90914 0.85279 0.83370 0.82186 0.80980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.43 127.69 1.20 1.81 16 2 N -0.53 -19.89 5.19 -883.66 -4.59 -24.47 16 3 C 0.04 1.54 6.55 86.65 0.57 2.11 16 4 C -0.09 -4.24 5.84 31.80 0.19 -4.06 16 5 C 0.04 2.08 2.74 -10.66 -0.03 2.05 16 6 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 7 C -0.51 -26.60 6.25 25.60 0.16 -26.44 16 8 H 0.10 4.85 1.77 -2.91 -0.01 4.84 16 9 C 0.01 0.58 5.35 84.65 0.45 1.03 16 10 N -0.93 -55.00 12.72 21.45 0.27 -54.72 16 11 Si 0.93 42.42 29.54 68.60 2.03 44.45 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 13 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 14 H -0.25 -10.58 7.11 99.48 0.71 -9.88 16 15 C 0.09 3.98 2.44 45.03 0.11 4.09 16 16 H 0.03 1.39 7.22 -2.39 -0.02 1.37 16 17 C -0.04 -1.46 5.00 29.85 0.15 -1.31 16 18 C 0.15 6.10 4.96 42.55 0.21 6.31 16 19 C -0.16 -5.95 7.86 22.36 0.18 -5.78 16 20 C -0.09 -2.91 10.18 22.47 0.23 -2.68 16 21 C -0.18 -5.30 10.11 22.36 0.23 -5.08 16 22 C 0.08 2.53 11.18 84.67 0.95 3.47 16 23 N -0.51 -19.96 9.66 -183.88 -1.78 -21.74 16 24 H 0.02 0.55 7.98 -2.39 -0.02 0.54 16 25 H 0.07 2.01 8.14 -2.38 -0.02 2.00 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.03 1.27 8.01 -2.39 -0.02 1.25 16 29 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 2.26 7.86 -2.38 -0.02 2.24 16 31 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 32 H 0.08 3.47 6.17 -2.39 -0.01 3.46 16 33 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 34 H 0.13 4.68 7.07 -2.91 -0.02 4.66 16 35 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 36 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -63.80 293.75 1.57 -62.23 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 1.05 Total: 18.70 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 4.59 Total: -24.44 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -6.09 Total: -100.93 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -63.80 1.57 -62.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.262 kcal (2) G-P(sol) polarization free energy of solvation -63.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds