Wall clock time and date at job start Mon Mar 30 2020 04:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48567 * 110.99386 * 2 1 4 4 C 1.54384 * 104.59085 * 200.95404 * 3 2 1 5 5 C 1.54255 * 105.06060 * 23.85535 * 4 3 2 6 6 H 1.09004 * 110.40854 * 241.05839 * 5 4 3 7 7 C 1.50700 * 110.32706 * 118.89090 * 5 4 3 8 8 H 1.07993 * 120.00355 * 244.36403 * 7 5 4 9 9 C 1.37881 * 119.99319 * 64.36114 * 7 5 4 10 10 N 1.31511 * 120.00681 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99456 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47296 * 60.00515 * 11 9 7 13 13 H 1.48503 * 109.46988 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47497 * 299.99925 * 11 9 7 15 15 C 1.48555 * 111.00632 * 244.57843 * 2 1 3 16 16 H 1.09010 * 110.40734 * 40.26247 * 15 2 1 17 17 C 1.52989 * 110.41360 * 277.82085 * 15 2 1 18 18 C 1.50701 * 109.47453 * 174.43736 * 17 15 2 19 19 C 1.38228 * 119.62269 * 123.67014 * 18 17 15 20 20 C 1.38624 * 119.16304 * 179.75693 * 19 18 17 21 21 C 1.38677 * 118.41816 * 0.50420 * 20 19 18 22 22 C 1.38180 * 119.16464 * 359.73697 * 21 20 19 23 23 N 1.31858 * 119.61386 * 303.94272 * 18 17 15 24 24 H 1.09005 * 109.47115 * 62.31082 * 1 2 3 25 25 H 1.09006 * 109.46510 * 182.30276 * 1 2 3 26 26 H 1.08993 * 109.47758 * 302.30444 * 1 2 3 27 27 H 1.08995 * 110.40943 * 319.73230 * 3 2 1 28 28 H 1.09004 * 110.40980 * 82.18124 * 3 2 1 29 29 H 1.09004 * 110.32068 * 142.74898 * 4 3 2 30 30 H 1.08993 * 110.32165 * 264.95763 * 4 3 2 31 31 H 0.96992 * 120.00346 * 179.97438 * 10 9 7 32 32 H 1.09000 * 109.47057 * 294.43532 * 17 15 2 33 33 H 1.09002 * 109.47830 * 54.43200 * 17 15 2 34 34 H 1.08004 * 120.41419 * 359.97438 * 19 18 17 35 35 H 1.07998 * 120.79158 * 180.21912 * 20 19 18 36 36 H 1.07995 * 120.41406 * 179.70931 * 21 20 19 37 37 H 1.07997 * 119.61495 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4433 1.2503 -0.5343 5 6 3.4434 -0.0537 -1.3583 6 1 4.1486 -0.7699 -0.9365 7 6 3.7896 0.2357 -2.7962 8 1 3.0617 0.0561 -3.5736 9 6 5.0356 0.7298 -3.1192 10 7 5.9221 0.9481 -2.1726 11 14 5.4650 1.0878 -4.9015 12 1 4.5254 2.1024 -5.4429 13 1 6.8542 1.6065 -4.9814 14 1 5.3571 -0.1613 -5.6973 15 6 2.0015 -0.5953 -1.2525 16 1 1.4100 -0.2713 -2.1089 17 6 2.0107 -2.1221 -1.1559 18 6 2.4241 -2.7071 -2.4818 19 6 3.5085 -3.5620 -2.5431 20 6 3.8773 -4.0986 -3.7669 21 6 3.1447 -3.7453 -4.8901 22 6 2.0758 -2.8806 -4.7524 23 7 1.7504 -2.3931 -3.5709 24 1 -0.3633 0.4775 -0.9100 25 1 -0.3632 -1.0269 0.0413 26 1 -0.3634 0.5491 0.8685 27 1 1.4097 2.0212 -0.6603 28 1 2.0077 1.7917 1.0121 29 1 3.6936 2.0997 -1.1698 30 1 4.1481 1.1750 0.2936 31 1 6.7988 1.2953 -2.3999 32 1 2.7165 -2.4332 -0.3857 33 1 1.0125 -2.4760 -0.8980 34 1 4.0593 -3.8116 -1.6482 35 1 4.7180 -4.7721 -3.8445 36 1 3.4068 -4.1406 -5.8604 37 1 1.5006 -2.6002 -5.6223 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:52 Heat of formation + Delta-G solvation = 15.439175 kcal Electronic energy + Delta-G solvation = -18389.026679 eV Core-core repulsion = 15744.016304 eV Total energy + Delta-G solvation = -2645.010376 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06917 -39.67152 -35.09285 -34.20706 -33.06414 -32.30160 -30.42855 -28.11553 -26.05917 -25.24512 -24.28377 -22.82241 -21.65851 -20.62324 -18.38721 -17.59707 -16.96855 -16.67134 -16.38611 -16.11878 -15.80990 -15.16853 -14.80107 -14.45257 -14.16476 -14.00602 -13.82062 -13.48455 -13.22102 -12.94250 -12.63832 -12.50777 -12.31314 -12.19475 -12.04076 -11.98201 -11.66458 -10.96424 -10.77165 -10.57997 -10.44642 -10.16155 -9.65213 -9.32023 -8.09498 -6.15155 0.38900 0.56902 1.35491 1.36129 1.43384 2.41740 2.97713 3.21651 3.30815 3.61585 4.01819 4.08309 4.13732 4.24203 4.34755 4.41134 4.44009 4.54105 4.65591 4.72517 4.73471 4.80028 4.88704 5.00207 5.05367 5.06783 5.10536 5.34806 5.36961 5.40507 5.49600 5.66530 5.79093 5.90566 6.00776 6.03039 6.32146 6.49521 6.93351 7.28104 7.49965 8.99636 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.012858 C = 0.007812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.435500 B = 2177.048513 C = 3583.254560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.523 5.523 3 C 0.041 3.959 4 C -0.093 4.093 5 C 0.056 3.944 6 H 0.003 0.997 7 C -0.501 4.501 8 H 0.044 0.956 9 C 0.018 3.982 10 N -0.917 5.917 11 Si 0.934 3.066 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.088 3.912 16 H 0.034 0.966 17 C -0.044 4.044 18 C 0.141 3.859 19 C -0.178 4.178 20 C -0.080 4.080 21 C -0.187 4.187 22 C 0.081 3.919 23 N -0.503 5.503 24 H 0.017 0.983 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.033 0.967 31 H 0.258 0.742 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 -7.845 -0.749 10.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.247 5.247 3 C -0.086 4.086 4 C -0.131 4.131 5 C 0.037 3.963 6 H 0.021 0.979 7 C -0.540 4.540 8 H 0.062 0.938 9 C -0.180 4.180 10 N -0.557 5.557 11 Si 0.761 3.239 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.198 1.198 15 C -0.020 4.020 16 H 0.052 0.948 17 C -0.082 4.082 18 C 0.003 3.997 19 C -0.198 4.198 20 C -0.106 4.106 21 C -0.206 4.206 22 C -0.076 4.076 23 N -0.213 5.213 24 H 0.036 0.964 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.051 0.949 28 H 0.105 0.895 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.177 0.823 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.470 -7.509 -0.164 10.593 hybrid contribution 1.111 0.454 -1.756 2.126 sum -6.359 -7.055 -1.919 9.690 Atomic orbital electron populations 1.22534 0.87487 1.02578 1.00578 1.65263 1.08728 1.15222 1.35484 1.23066 0.95498 0.89769 1.00314 1.22079 0.93891 0.99700 0.97465 1.19293 0.90520 0.92401 0.94070 0.97925 1.21274 0.98101 1.41660 0.92930 0.93809 1.25544 0.96606 0.96030 0.99839 1.70072 1.05949 1.46404 1.33257 0.85971 0.77091 0.78570 0.82259 1.20173 1.21018 1.19839 1.22528 0.96622 0.93382 0.89458 0.94763 1.20323 1.01842 0.94220 0.91801 1.21125 0.91981 0.92295 0.94256 1.22117 0.98061 0.99555 1.00059 1.21863 0.98748 0.97876 0.92078 1.22354 0.97176 1.00451 1.00636 1.23079 0.95862 0.93459 0.95178 1.67345 1.31893 1.22622 0.99458 0.96393 0.90608 0.89982 0.94889 0.89518 0.94566 0.94832 0.93331 0.90364 0.89948 0.84494 0.82558 0.82323 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.41 127.69 1.20 1.71 16 2 N -0.52 -19.78 5.34 -882.66 -4.71 -24.49 16 3 C 0.04 1.62 6.49 86.45 0.56 2.19 16 4 C -0.09 -4.50 5.86 31.49 0.18 -4.32 16 5 C 0.06 2.86 2.23 -10.65 -0.02 2.83 16 6 H 0.00 0.14 7.73 -2.38 -0.02 0.13 16 7 C -0.50 -27.75 7.84 25.60 0.20 -27.55 16 8 H 0.04 2.50 7.56 -2.91 -0.02 2.47 16 9 C 0.02 1.03 5.14 84.66 0.44 1.46 16 10 N -0.92 -53.76 12.59 21.45 0.27 -53.48 16 11 Si 0.93 44.72 29.54 68.60 2.03 46.75 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 14 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 15 C 0.09 3.78 1.78 45.06 0.08 3.86 16 16 H 0.03 1.63 7.07 -2.38 -0.02 1.61 16 17 C -0.04 -1.64 5.28 29.84 0.16 -1.48 16 18 C 0.14 5.43 5.39 42.55 0.23 5.66 16 19 C -0.18 -6.20 9.71 22.36 0.22 -5.98 16 20 C -0.08 -2.39 10.18 22.47 0.23 -2.16 16 21 C -0.19 -5.38 10.11 22.36 0.23 -5.16 16 22 C 0.08 2.68 11.18 84.67 0.95 3.63 16 23 N -0.50 -19.67 9.80 -183.88 -1.80 -21.47 16 24 H 0.02 0.55 7.95 -2.38 -0.02 0.53 16 25 H 0.08 2.06 7.47 -2.38 -0.02 2.04 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.03 1.28 7.99 -2.39 -0.02 1.26 16 28 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.04 1.92 7.43 -2.39 -0.02 1.90 16 30 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.08 2.88 7.68 -2.39 -0.02 2.86 16 33 H 0.08 2.75 7.41 -2.39 -0.02 2.73 16 34 H 0.14 4.33 7.95 -2.91 -0.02 4.30 16 35 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 36 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.17 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -64.88 302.34 1.46 -63.42 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 1.03 Total: 14.58 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 4.65 Total: -25.30 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -6.25 Total: -99.45 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.88 1.46 -63.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.862 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds