Wall clock time and date at job start Mon Mar 30 2020 04:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48804 * 111.18252 * 2 1 4 4 C 1.54944 * 103.34559 * 159.50545 * 3 2 1 5 5 C 1.54591 * 102.92325 * 322.68768 * 4 3 2 6 6 H 1.09002 * 110.30796 * 140.87093 * 5 4 3 7 7 C 1.50695 * 110.39323 * 263.00231 * 5 4 3 8 8 H 1.07991 * 120.00494 * 115.76867 * 7 5 4 9 9 C 1.37886 * 119.99555 * 295.76236 * 7 5 4 10 10 N 1.31515 * 119.99953 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99701 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47017 * 90.00199 * 11 9 7 13 13 H 1.48500 * 109.47111 * 209.99702 * 11 9 7 14 14 H 1.48495 * 109.46996 * 330.00191 * 11 9 7 15 15 C 1.47901 * 110.99826 * 117.33604 * 2 1 3 16 16 H 1.09000 * 109.92159 * 333.70452 * 15 2 1 17 17 C 1.53004 * 109.91893 * 94.80391 * 15 2 1 18 18 C 1.50703 * 109.47094 * 293.19658 * 17 15 2 19 19 C 1.38220 * 119.62033 * 124.97257 * 18 17 15 20 20 C 1.38627 * 119.16050 * 180.02562 * 19 18 17 21 21 C 1.38678 * 118.42399 * 0.02562 * 20 19 18 22 22 C 1.38176 * 119.15893 * 0.02562 * 21 20 19 23 23 N 1.31860 * 119.61682 * 304.99869 * 18 17 15 24 24 H 1.08995 * 109.46742 * 302.66550 * 1 2 3 25 25 H 1.08996 * 109.46793 * 62.66275 * 1 2 3 26 26 H 1.09001 * 109.46774 * 182.66525 * 1 2 3 27 27 H 1.08996 * 110.52748 * 41.07414 * 3 2 1 28 28 H 1.09006 * 110.84433 * 278.08622 * 3 2 1 29 29 H 1.08996 * 110.72115 * 204.32497 * 4 3 2 30 30 H 1.09004 * 110.87584 * 81.12217 * 4 3 2 31 31 H 0.96995 * 119.99471 * 179.97438 * 10 9 7 32 32 H 1.08993 * 109.47207 * 173.19318 * 17 15 2 33 33 H 1.09002 * 109.46864 * 53.19235 * 17 15 2 34 34 H 1.08000 * 120.42111 * 0.02562 * 19 18 17 35 35 H 1.08007 * 120.78745 * 180.02562 * 20 19 18 36 36 H 1.07995 * 120.42098 * 179.97438 * 21 20 19 37 37 H 1.07995 * 119.61795 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0068 1.3875 0.0000 4 6 3.4528 1.2107 0.5278 5 6 3.2975 0.1059 1.5980 6 1 4.1459 -0.5775 1.5621 7 6 3.1769 0.7172 2.9701 8 1 2.2653 0.5974 3.5365 9 6 4.2308 1.4295 3.5025 10 7 5.3412 1.5749 2.8130 11 14 4.0816 2.1866 5.2037 12 1 4.5496 1.2122 6.2219 13 1 4.9143 3.4142 5.2738 14 1 2.6625 2.5352 5.4676 15 6 1.9991 -0.6341 1.2266 16 1 1.2744 -0.5412 2.0355 17 6 2.2983 -2.1111 0.9623 18 6 1.0080 -2.8479 0.7109 19 6 0.8544 -3.5795 -0.4517 20 6 -0.3367 -4.2532 -0.6736 21 6 -1.3336 -4.1649 0.2864 22 6 -1.1084 -3.4134 1.4238 23 7 0.0383 -2.7868 1.6023 24 1 -0.3632 0.5547 0.8651 25 1 -0.3633 0.4719 -0.9129 26 1 -0.3633 -1.0266 0.0478 27 1 1.4274 2.0219 0.6707 28 1 2.0133 1.8009 -1.0086 29 1 3.8149 2.1352 0.9775 30 1 4.1202 0.8842 -0.2697 31 1 6.0823 2.0762 3.1874 32 1 2.7993 -2.5411 1.8295 33 1 2.9438 -2.2003 0.0885 34 1 1.6523 -3.6258 -1.1782 35 1 -0.4848 -4.8330 -1.5727 36 1 -2.2744 -4.6764 0.1464 37 1 -1.8795 -3.3399 2.1764 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:54 Heat of formation + Delta-G solvation = 35.564359 kcal Electronic energy + Delta-G solvation = -18098.543598 eV Core-core repulsion = 15454.405916 eV Total energy + Delta-G solvation = -2644.137682 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.08538 -38.02225 -33.13708 -32.83435 -32.06895 -30.51608 -29.03777 -26.43640 -24.47816 -23.55998 -23.25097 -21.55424 -19.92958 -18.90464 -16.78618 -16.15255 -15.94306 -15.16969 -14.73665 -14.60902 -14.24828 -13.87954 -13.18708 -13.09979 -12.78663 -12.60081 -12.24748 -12.13154 -11.52106 -11.35796 -10.98287 -10.71814 -10.57168 -10.45462 -10.35089 -10.13963 -9.80156 -9.63789 -9.32409 -9.02537 -8.76117 -8.60266 -8.32692 -7.61138 -5.98642 -4.02269 1.35321 1.48928 3.32496 3.39184 3.43026 4.04772 4.45707 4.59302 4.85871 4.94753 5.01261 5.24297 5.32960 5.36712 5.73429 5.74628 5.88172 5.92066 6.05352 6.06814 6.16206 6.29969 6.31685 6.35262 6.40637 6.47413 6.60273 6.79554 6.83779 6.96426 7.20017 7.30130 7.70121 7.70848 7.89611 7.94202 7.99110 8.31101 8.50353 9.00669 9.61671 11.09670 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030315 B = 0.006403 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.411807 B = 4372.124874 C = 4697.719270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.523 5.523 3 C 0.039 3.961 4 C -0.099 4.099 5 C 0.048 3.952 6 H 0.036 0.964 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.063 3.937 10 N -0.888 5.888 11 Si 0.888 3.112 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.080 3.920 16 H 0.059 0.941 17 C -0.057 4.057 18 C 0.159 3.841 19 C -0.170 4.170 20 C -0.077 4.077 21 C -0.195 4.195 22 C 0.099 3.901 23 N -0.480 5.480 24 H 0.021 0.979 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.260 0.740 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.829 -8.513 -6.789 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.247 5.247 3 C -0.089 4.089 4 C -0.138 4.138 5 C 0.029 3.971 6 H 0.054 0.946 7 C -0.548 4.548 8 H 0.072 0.928 9 C -0.139 4.139 10 N -0.527 5.527 11 Si 0.716 3.284 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.029 4.029 16 H 0.077 0.923 17 C -0.096 4.096 18 C 0.022 3.978 19 C -0.190 4.190 20 C -0.104 4.104 21 C -0.215 4.215 22 C -0.059 4.059 23 N -0.189 5.189 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.367 -8.229 -6.485 14.054 hybrid contribution -0.659 0.349 0.812 1.102 sum -10.026 -7.881 -5.673 13.958 Atomic orbital electron populations 1.22432 0.90034 1.00804 0.99357 1.64663 1.06156 1.15695 1.38194 1.23227 0.97967 0.89017 0.98653 1.22389 0.91985 1.02232 0.97204 1.19507 0.90927 0.92814 0.93892 0.94585 1.21236 1.00069 1.33032 1.00481 0.92752 1.24949 0.95335 0.96337 0.97267 1.69973 1.04184 1.41287 1.37220 0.86661 0.77986 0.78778 0.85003 1.20676 1.21299 1.20017 1.22561 0.99248 0.91331 0.89727 0.92258 1.20722 0.91109 0.95204 1.02531 1.21563 0.95212 0.91941 0.89110 1.22009 0.98683 0.99264 0.99027 1.21510 0.93189 0.97149 0.98503 1.22003 1.00372 1.02733 0.96383 1.22719 0.94541 0.92685 0.95938 1.67595 1.00720 1.19302 1.31313 0.96024 0.92989 0.92481 0.94520 0.92385 0.90384 0.94303 0.93066 0.89711 0.90256 0.85019 0.85483 0.85554 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.22 60.07 0.55 0.97 16 2 N -0.52 -10.41 5.10 -230.53 -1.18 -11.59 16 3 C 0.04 0.80 6.58 -1.74 -0.01 0.79 16 4 C -0.10 -2.34 6.17 -24.87 -0.15 -2.50 16 5 C 0.05 1.18 2.50 -90.42 -0.23 0.95 16 6 H 0.04 0.96 7.69 -51.93 -0.40 0.56 16 7 C -0.51 -13.98 8.49 -34.44 -0.29 -14.27 16 8 H 0.05 1.51 7.34 -52.49 -0.39 1.13 16 9 C 0.06 1.73 5.10 -17.82 -0.09 1.64 16 10 N -0.89 -25.29 12.15 55.43 0.67 -24.62 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.08 1.71 2.18 -66.64 -0.15 1.56 16 16 H 0.06 1.40 6.64 -51.93 -0.34 1.06 16 17 C -0.06 -1.07 5.07 -27.88 -0.14 -1.21 16 18 C 0.16 2.65 4.28 -82.58 -0.35 2.30 16 19 C -0.17 -2.37 9.71 -39.44 -0.38 -2.76 16 20 C -0.08 -0.91 10.18 -39.28 -0.40 -1.31 16 21 C -0.19 -2.24 10.11 -39.44 -0.40 -2.64 16 22 C 0.10 1.34 11.14 -17.55 -0.20 1.14 16 23 N -0.48 -8.17 8.96 -9.48 -0.08 -8.25 16 24 H 0.02 0.40 8.01 -51.93 -0.42 -0.01 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.00 5.42 -51.93 -0.28 0.72 16 27 H 0.04 0.79 7.97 -51.93 -0.41 0.37 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 2.03 6.78 -51.93 -0.35 1.68 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.08 1.39 7.87 -51.93 -0.41 0.99 16 34 H 0.13 1.63 7.95 -52.49 -0.42 1.22 16 35 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -29.32 298.52 -8.86 -38.17 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.51 Total: 0.71 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -2.24 Total: -15.33 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.59 Total: -44.46 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.32 -8.86 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.739 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds