Wall clock time and date at job start Mon Mar 30 2020 04:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48804 * 111.18252 * 2 1 4 4 C 1.54944 * 103.34559 * 159.50545 * 3 2 1 5 5 C 1.54591 * 102.92325 * 322.68768 * 4 3 2 6 6 H 1.09002 * 110.30796 * 140.87093 * 5 4 3 7 7 C 1.50695 * 110.39323 * 263.00231 * 5 4 3 8 8 H 1.07991 * 120.00494 * 115.76867 * 7 5 4 9 9 C 1.37886 * 119.99555 * 295.76236 * 7 5 4 10 10 N 1.31515 * 119.99953 * 359.97438 * 9 7 5 11 11 Si 1.86803 * 119.99701 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47017 * 90.00199 * 11 9 7 13 13 H 1.48500 * 109.47111 * 209.99702 * 11 9 7 14 14 H 1.48495 * 109.46996 * 330.00191 * 11 9 7 15 15 C 1.47901 * 110.99826 * 117.33604 * 2 1 3 16 16 H 1.09000 * 109.92159 * 333.70452 * 15 2 1 17 17 C 1.53004 * 109.91893 * 94.80391 * 15 2 1 18 18 C 1.50703 * 109.47094 * 293.19658 * 17 15 2 19 19 C 1.38220 * 119.62033 * 124.97257 * 18 17 15 20 20 C 1.38627 * 119.16050 * 180.02562 * 19 18 17 21 21 C 1.38678 * 118.42399 * 0.02562 * 20 19 18 22 22 C 1.38176 * 119.15893 * 0.02562 * 21 20 19 23 23 N 1.31860 * 119.61682 * 304.99869 * 18 17 15 24 24 H 1.08995 * 109.46742 * 302.66550 * 1 2 3 25 25 H 1.08996 * 109.46793 * 62.66275 * 1 2 3 26 26 H 1.09001 * 109.46774 * 182.66525 * 1 2 3 27 27 H 1.08996 * 110.52748 * 41.07414 * 3 2 1 28 28 H 1.09006 * 110.84433 * 278.08622 * 3 2 1 29 29 H 1.08996 * 110.72115 * 204.32497 * 4 3 2 30 30 H 1.09004 * 110.87584 * 81.12217 * 4 3 2 31 31 H 0.96995 * 119.99471 * 179.97438 * 10 9 7 32 32 H 1.08993 * 109.47207 * 173.19318 * 17 15 2 33 33 H 1.09002 * 109.46864 * 53.19235 * 17 15 2 34 34 H 1.08000 * 120.42111 * 0.02562 * 19 18 17 35 35 H 1.08007 * 120.78745 * 180.02562 * 20 19 18 36 36 H 1.07995 * 120.42098 * 179.97438 * 21 20 19 37 37 H 1.07995 * 119.61795 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0068 1.3875 0.0000 4 6 3.4528 1.2107 0.5278 5 6 3.2975 0.1059 1.5980 6 1 4.1459 -0.5775 1.5621 7 6 3.1769 0.7172 2.9701 8 1 2.2653 0.5974 3.5365 9 6 4.2308 1.4295 3.5025 10 7 5.3412 1.5749 2.8130 11 14 4.0816 2.1866 5.2037 12 1 4.5496 1.2122 6.2219 13 1 4.9143 3.4142 5.2738 14 1 2.6625 2.5352 5.4676 15 6 1.9991 -0.6341 1.2266 16 1 1.2744 -0.5412 2.0355 17 6 2.2983 -2.1111 0.9623 18 6 1.0080 -2.8479 0.7109 19 6 0.8544 -3.5795 -0.4517 20 6 -0.3367 -4.2532 -0.6736 21 6 -1.3336 -4.1649 0.2864 22 6 -1.1084 -3.4134 1.4238 23 7 0.0383 -2.7868 1.6023 24 1 -0.3632 0.5547 0.8651 25 1 -0.3633 0.4719 -0.9129 26 1 -0.3633 -1.0266 0.0478 27 1 1.4274 2.0219 0.6707 28 1 2.0133 1.8009 -1.0086 29 1 3.8149 2.1352 0.9775 30 1 4.1202 0.8842 -0.2697 31 1 6.0823 2.0762 3.1874 32 1 2.7993 -2.5411 1.8295 33 1 2.9438 -2.2003 0.0885 34 1 1.6523 -3.6258 -1.1782 35 1 -0.4848 -4.8330 -1.5727 36 1 -2.2744 -4.6764 0.1464 37 1 -1.8795 -3.3399 2.1764 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:54 Heat of formation + Delta-G solvation = 17.396165 kcal Electronic energy + Delta-G solvation = -18099.331430 eV Core-core repulsion = 15454.405916 eV Total energy + Delta-G solvation = -2644.925514 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.23834 -39.66221 -35.11764 -34.12223 -33.13964 -32.37280 -30.46585 -28.25333 -25.96054 -25.41066 -24.28957 -22.79799 -21.72808 -20.66353 -18.47463 -17.51509 -17.07341 -16.74417 -16.32967 -16.04613 -15.92661 -15.48392 -14.53375 -14.41653 -14.16981 -14.01629 -13.85030 -13.74501 -13.12314 -12.91300 -12.63860 -12.50817 -12.27749 -12.18185 -12.06000 -11.98705 -11.69998 -11.09504 -10.84281 -10.66511 -10.45233 -10.17141 -9.73971 -9.25846 -8.12899 -6.23284 0.31544 0.50755 1.38407 1.39363 1.49289 2.41560 2.98478 3.16795 3.21212 3.52865 3.88992 4.11815 4.19273 4.21595 4.32681 4.36393 4.44904 4.54411 4.58326 4.68717 4.74489 4.79176 4.89396 4.91123 5.00637 5.03784 5.14901 5.30089 5.36567 5.41044 5.46201 5.59935 5.83165 5.87360 5.94322 6.03098 6.29374 6.43648 6.85914 7.24307 7.43635 8.94799 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030315 B = 0.006403 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.411807 B = 4372.124874 C = 4697.719270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.515 5.515 3 C 0.047 3.953 4 C -0.094 4.094 5 C 0.041 3.959 6 H 0.008 0.992 7 C -0.527 4.527 8 H 0.041 0.959 9 C 0.018 3.982 10 N -0.913 5.913 11 Si 0.948 3.052 12 H -0.275 1.275 13 H -0.279 1.279 14 H -0.274 1.274 15 C 0.094 3.906 16 H 0.031 0.969 17 C -0.051 4.051 18 C 0.132 3.868 19 C -0.173 4.173 20 C -0.072 4.072 21 C -0.178 4.178 22 C 0.082 3.918 23 N -0.519 5.519 24 H 0.008 0.992 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.025 0.975 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 -9.575 -8.104 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.239 5.239 3 C -0.081 4.081 4 C -0.133 4.133 5 C 0.022 3.978 6 H 0.026 0.974 7 C -0.566 4.566 8 H 0.059 0.941 9 C -0.181 4.181 10 N -0.552 5.552 11 Si 0.774 3.226 12 H -0.201 1.201 13 H -0.205 1.205 14 H -0.198 1.198 15 C -0.015 4.015 16 H 0.049 0.951 17 C -0.089 4.089 18 C -0.005 4.005 19 C -0.193 4.193 20 C -0.098 4.098 21 C -0.198 4.198 22 C -0.075 4.075 23 N -0.230 5.230 24 H 0.026 0.974 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.162 0.838 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.406 -9.296 -7.804 16.656 hybrid contribution -0.087 0.611 1.212 1.360 sum -11.493 -8.685 -6.592 15.842 Atomic orbital electron populations 1.22442 0.88340 1.01317 0.99953 1.64720 1.07649 1.14788 1.36788 1.23162 0.95595 0.89509 0.99804 1.22212 0.94092 1.00244 0.96738 1.19479 0.91805 0.93038 0.93525 0.97353 1.21465 0.99738 1.33539 1.01811 0.94056 1.25646 0.95006 0.96700 1.00737 1.70074 1.04686 1.41776 1.38674 0.85711 0.77965 0.78163 0.80768 1.20121 1.20477 1.19848 1.22239 0.96551 0.93065 0.89609 0.95083 1.20504 0.92980 0.93527 1.01932 1.21190 0.94443 0.94006 0.90834 1.22154 1.00191 0.98894 0.98063 1.21951 0.91917 0.96254 0.99681 1.22420 1.01604 1.00913 0.94834 1.23155 0.93893 0.92870 0.97576 1.67465 1.02088 1.21000 1.32403 0.97354 0.90470 0.91882 0.95638 0.89411 0.93303 0.94000 0.92919 0.91689 0.89636 0.83840 0.81759 0.81751 0.81543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.22 127.69 1.18 2.16 16 2 N -0.52 -20.29 5.10 -883.28 -4.50 -24.80 16 3 C 0.05 1.92 6.58 86.60 0.57 2.49 16 4 C -0.09 -4.56 6.17 31.80 0.20 -4.37 16 5 C 0.04 2.11 2.50 -10.66 -0.03 2.08 16 6 H 0.01 0.47 7.69 -2.39 -0.02 0.45 16 7 C -0.53 -30.14 8.49 25.60 0.22 -29.92 16 8 H 0.04 2.41 7.34 -2.92 -0.02 2.39 16 9 C 0.02 1.04 5.10 84.66 0.43 1.47 16 10 N -0.91 -53.45 12.15 21.45 0.26 -53.19 16 11 Si 0.95 44.83 29.54 68.60 2.03 46.85 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 15 C 0.09 4.16 2.18 45.06 0.10 4.26 16 16 H 0.03 1.54 6.64 -2.39 -0.02 1.53 16 17 C -0.05 -1.96 5.07 29.85 0.15 -1.81 16 18 C 0.13 4.34 4.28 42.55 0.18 4.53 16 19 C -0.17 -4.46 9.71 22.36 0.22 -4.24 16 20 C -0.07 -1.40 10.18 22.47 0.23 -1.18 16 21 C -0.18 -3.38 10.11 22.36 0.23 -3.15 16 22 C 0.08 2.06 11.14 84.67 0.94 3.01 16 23 N -0.52 -17.52 8.96 -183.89 -1.65 -19.16 16 24 H 0.01 0.29 8.01 -2.39 -0.02 0.28 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.06 2.12 5.42 -2.39 -0.01 2.11 16 27 H 0.03 1.09 7.97 -2.39 -0.02 1.07 16 28 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 29 H 0.05 2.63 6.78 -2.39 -0.02 2.61 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.09 3.08 7.87 -2.39 -0.02 3.06 16 34 H 0.14 3.24 7.95 -2.91 -0.02 3.21 16 35 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 36 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -65.46 298.52 1.78 -63.68 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.04 Total: 11.29 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 4.61 Total: -24.67 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -5.89 Total: -97.15 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.46 1.78 -63.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.076 kcal (2) G-P(sol) polarization free energy of solvation -65.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds