Wall clock time and date at job start Mon Mar 30 2020 04:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47956 * 110.99925 * 2 1 4 4 C 1.53940 * 86.18326 * 222.41761 * 3 2 1 5 5 C 1.50696 * 113.73420 * 138.08170 * 4 3 2 6 6 C 1.38258 * 119.99916 * 300.02348 * 5 4 3 7 7 C 1.38216 * 119.99983 * 180.02562 * 6 5 4 8 8 C 1.38256 * 119.99979 * 359.97438 * 7 6 5 9 9 C 1.38211 * 119.99857 * 359.74150 * 8 7 6 10 10 C 1.38207 * 120.00300 * 119.99984 * 5 4 3 11 11 C 1.50707 * 119.99948 * 0.02562 * 10 5 4 12 12 H 1.09005 * 109.46877 * 324.99632 * 11 10 5 13 13 N 1.46900 * 109.47130 * 204.99968 * 11 10 5 14 14 C 1.50696 * 109.47007 * 84.99355 * 11 10 5 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 11 10 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47962 * 110.99900 * 260.64170 * 2 1 3 23 23 H 1.09010 * 109.47293 * 59.99998 * 1 2 3 24 24 H 1.09002 * 109.47218 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47600 * 299.99779 * 1 2 3 26 26 H 1.09007 * 113.75782 * 108.10066 * 3 2 1 27 27 H 1.09002 * 113.75976 * 336.73745 * 3 2 1 28 28 H 1.09004 * 113.72916 * 269.26109 * 4 3 2 29 29 H 1.07997 * 119.99961 * 359.97438 * 6 5 4 30 30 H 1.07998 * 119.99807 * 179.97438 * 7 6 5 31 31 H 1.08000 * 119.99477 * 179.97438 * 8 7 6 32 32 H 1.08006 * 120.00069 * 180.27773 * 9 8 7 33 33 H 1.00899 * 110.99700 * 299.99445 * 13 11 10 34 34 H 1.00893 * 110.99909 * 63.95117 * 13 11 10 35 35 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 36 36 H 1.08998 * 113.75801 * 23.26775 * 22 2 1 37 37 H 1.09000 * 113.75954 * 251.89861 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0211 0.8793 -1.0361 5 6 3.2575 1.8424 -2.1708 6 6 2.2076 2.2194 -2.9875 7 6 2.4245 3.1023 -4.0286 8 6 3.6912 3.6088 -4.2528 9 6 4.7396 3.2364 -3.4327 10 6 4.5236 2.3491 -2.3947 11 6 5.6681 1.9381 -1.5044 12 1 5.3052 1.8022 -0.4856 13 7 6.7009 2.9825 -1.5210 14 6 6.2545 0.6435 -2.0056 15 1 5.8402 0.1663 -2.8814 16 6 7.3199 0.0683 -1.3460 17 7 7.8320 -1.0612 -1.7837 18 14 8.0359 0.8934 0.1693 19 1 9.1144 1.8288 -0.2394 20 1 6.9678 1.6468 0.8740 21 1 8.5948 -0.1398 1.0779 22 6 1.9992 -0.2246 -1.3630 23 1 -0.3634 0.5139 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 2.4459 1.6802 0.9483 27 1 1.3009 2.1197 -0.3940 28 1 3.9458 0.5068 -0.5952 29 1 1.2182 1.8234 -2.8126 30 1 1.6045 3.3965 -4.6668 31 1 3.8607 4.2984 -5.0666 32 1 5.7282 3.6356 -3.6051 33 1 7.0537 3.1274 -2.4552 34 1 6.3506 3.8437 -1.1292 35 1 8.5818 -1.4657 -1.3198 36 1 1.3009 0.0442 -2.1556 37 1 2.4459 -1.2089 -1.5037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:00 Heat of formation + Delta-G solvation = 41.715355 kcal Electronic energy + Delta-G solvation = -18143.119971 eV Core-core repulsion = 15499.249016 eV Total energy + Delta-G solvation = -2643.870955 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.53919 -39.57130 -36.53912 -33.98565 -33.22191 -30.86397 -30.02247 -28.32217 -27.06829 -25.26066 -24.58146 -22.68720 -21.25557 -20.26469 -18.99403 -17.85943 -17.02049 -16.70273 -16.29787 -16.01628 -15.78151 -15.44482 -15.21959 -14.79283 -14.29116 -13.92316 -13.78170 -13.69936 -13.51070 -13.16921 -12.74023 -12.65527 -12.45482 -12.04413 -11.93927 -11.82330 -11.54599 -11.37325 -11.27456 -10.74023 -9.77364 -9.61687 -9.39084 -9.25384 -8.23180 -6.34903 0.53713 0.61954 1.50310 1.56096 1.69959 2.52323 2.90557 2.97829 3.11606 3.70485 3.83022 4.04901 4.14609 4.19064 4.20681 4.26739 4.35205 4.38034 4.49063 4.58073 4.62059 4.77517 4.82716 4.86949 4.98035 5.03247 5.18901 5.25083 5.30908 5.35095 5.52388 5.66763 5.73668 5.93720 6.11760 6.13924 6.24763 6.50631 6.78192 6.99106 7.41055 8.89990 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.009414 C = 0.007090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.984231 B = 2973.590322 C = 3948.105288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.502 5.502 3 C 0.021 3.979 4 C -0.085 4.085 5 C -0.082 4.082 6 C -0.121 4.121 7 C -0.133 4.133 8 C -0.124 4.124 9 C -0.139 4.139 10 C -0.091 4.091 11 C 0.226 3.774 12 H 0.042 0.958 13 N -0.846 5.846 14 C -0.501 4.501 15 H 0.026 0.974 16 C 0.028 3.972 17 N -0.947 5.947 18 Si 0.996 3.004 19 H -0.277 1.277 20 H -0.262 1.262 21 H -0.326 1.326 22 C 0.015 3.985 23 H 0.045 0.955 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.120 0.880 33 H 0.340 0.660 34 H 0.333 0.667 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.838 9.890 -0.461 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.225 5.225 3 C -0.107 4.107 4 C -0.104 4.104 5 C -0.083 4.083 6 C -0.139 4.139 7 C -0.151 4.151 8 C -0.142 4.142 9 C -0.157 4.157 10 C -0.093 4.093 11 C 0.116 3.884 12 H 0.060 0.940 13 N -0.378 5.378 14 C -0.539 4.539 15 H 0.044 0.956 16 C -0.171 4.171 17 N -0.587 5.587 18 Si 0.826 3.174 19 H -0.203 1.203 20 H -0.186 1.186 21 H -0.256 1.256 22 C -0.113 4.113 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.151 0.849 30 H 0.166 0.834 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.167 8.834 0.585 16.706 hybrid contribution -0.019 0.662 -0.774 1.018 sum -14.186 9.496 -0.189 17.072 Atomic orbital electron populations 1.22915 0.88136 1.02937 1.01932 1.68422 1.10681 1.18865 1.24486 1.24000 0.96074 0.91443 0.99187 1.21891 0.98709 0.95084 0.94678 1.19636 0.93235 0.97893 0.97551 1.21114 0.98424 0.98628 0.95691 1.21338 0.97638 0.97900 0.98175 1.21354 0.92874 1.00545 0.99414 1.21126 0.99765 0.99024 0.95773 1.20918 0.95581 0.95447 0.97404 1.18340 0.86137 0.89853 0.94091 0.94044 1.59052 1.39241 1.11383 1.28114 1.20850 1.15410 1.05071 1.12596 0.95595 1.25804 0.96349 0.94396 1.00521 1.70086 1.25681 1.20329 1.42624 0.84908 0.78797 0.75776 0.77897 1.20283 1.18641 1.25632 1.24057 0.96475 0.99312 0.91454 0.93621 0.90819 0.90382 0.89697 0.89428 0.89842 0.84854 0.83435 0.83996 0.86220 0.84511 0.85431 0.92819 0.89238 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.22 9.64 127.69 1.23 1.01 16 2 N -0.50 -14.47 6.56 -934.21 -6.12 -20.60 16 3 C 0.02 0.60 7.45 86.41 0.64 1.25 16 4 C -0.08 -3.00 3.71 -10.89 -0.04 -3.04 16 5 C -0.08 -2.89 5.30 -19.87 -0.11 -2.99 16 6 C -0.12 -3.41 8.63 22.27 0.19 -3.21 16 7 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 8 C -0.12 -3.42 10.05 22.27 0.22 -3.20 16 9 C -0.14 -4.70 9.27 22.27 0.21 -4.49 16 10 C -0.09 -3.58 4.98 -19.87 -0.10 -3.68 16 11 C 0.23 10.22 1.65 43.42 0.07 10.29 16 12 H 0.04 1.98 5.70 -2.38 -0.01 1.97 16 13 N -0.85 -34.04 6.36 -174.94 -1.11 -35.15 16 14 C -0.50 -28.34 8.90 25.60 0.23 -28.11 16 15 H 0.03 1.66 7.98 -2.91 -0.02 1.63 16 16 C 0.03 1.66 5.47 84.66 0.46 2.12 16 17 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 18 Si 1.00 49.91 26.03 68.60 1.79 51.69 16 19 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.26 -12.43 6.54 99.48 0.65 -11.78 16 21 H -0.33 -16.59 7.11 99.48 0.71 -15.88 16 22 C 0.02 0.48 7.34 86.41 0.63 1.11 16 23 H 0.05 0.82 7.62 -2.38 -0.02 0.81 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 27 H 0.09 2.08 7.52 -2.39 -0.02 2.06 16 28 H 0.08 3.68 5.89 -2.38 -0.01 3.67 16 29 H 0.13 3.05 6.64 -2.91 -0.02 3.03 16 30 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 32 H 0.12 3.84 6.29 -2.91 -0.02 3.82 16 33 H 0.34 13.15 7.20 -89.70 -0.65 12.50 16 34 H 0.33 11.20 9.06 -89.70 -0.81 10.39 16 35 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 36 H 0.09 2.33 5.78 -2.39 -0.01 2.32 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -68.25 292.78 -1.71 -69.96 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.43 Total: 30.08 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 3.87 Total: -36.08 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -6.94 Total: -115.65 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 1.79 Total: 51.69 kcal Total: -68.25 -1.71 -69.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.671 kcal (2) G-P(sol) polarization free energy of solvation -68.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds