Wall clock time and date at job start Mon Mar 30 2020 04:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47959 * 110.99826 * 2 1 4 4 C 1.53939 * 86.17935 * 222.42087 * 3 2 1 5 5 C 1.50699 * 113.73238 * 138.07949 * 4 3 2 6 6 C 1.38261 * 120.00439 * 300.25370 * 5 4 3 7 7 C 1.38209 * 119.99991 * 180.27633 * 6 5 4 8 8 C 1.38256 * 120.00220 * 359.74607 * 7 6 5 9 9 C 1.38218 * 119.99993 * 359.97438 * 8 7 6 10 10 C 1.38217 * 119.99985 * 120.00326 * 5 4 3 11 11 C 1.50707 * 120.00080 * 359.97438 * 10 5 4 12 12 H 1.08997 * 109.46649 * 39.72805 * 11 10 5 13 13 N 1.46895 * 109.47234 * 159.73227 * 11 10 5 14 14 C 1.50695 * 109.47014 * 279.73262 * 11 10 5 15 15 H 1.08004 * 120.00546 * 0.27454 * 14 11 10 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47228 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46793 * 120.00131 * 18 16 14 21 21 H 1.48500 * 109.47000 * 240.00224 * 18 16 14 22 22 C 1.47958 * 110.99793 * 260.64220 * 2 1 3 23 23 H 1.09001 * 109.47510 * 59.99592 * 1 2 3 24 24 H 1.08996 * 109.47324 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46923 * 299.99774 * 1 2 3 26 26 H 1.08999 * 113.76055 * 108.10619 * 3 2 1 27 27 H 1.09001 * 113.76230 * 336.73347 * 3 2 1 28 28 H 1.09004 * 113.73238 * 269.25671 * 4 3 2 29 29 H 1.07999 * 119.99485 * 0.03854 * 6 5 4 30 30 H 1.07996 * 119.99874 * 179.76825 * 7 6 5 31 31 H 1.07995 * 119.99935 * 179.97438 * 8 7 6 32 32 H 1.07996 * 120.00063 * 180.02562 * 9 8 7 33 33 H 1.00907 * 110.99817 * 296.04438 * 13 11 10 34 34 H 1.00895 * 111.00026 * 59.99561 * 13 11 10 35 35 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 36 36 H 1.09004 * 113.76002 * 23.26396 * 22 2 1 37 37 H 1.09004 * 113.76245 * 251.89925 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8793 -1.0361 5 6 3.2573 1.8423 -2.1709 6 6 2.2064 2.2231 -2.9847 7 6 2.4244 3.1020 -4.0289 8 6 3.6921 3.6044 -4.2565 9 6 4.7415 3.2282 -3.4394 10 6 4.5235 2.3490 -2.3949 11 6 5.6678 1.9388 -1.5041 12 1 5.5849 0.8771 -1.2719 13 7 6.9401 2.1915 -2.1936 14 6 5.6214 2.7374 -0.2270 15 1 4.8387 3.4657 -0.0735 16 6 6.5745 2.5339 0.7484 17 7 7.5244 1.6433 0.5639 18 14 6.5174 3.5243 2.3312 19 1 5.3597 4.4534 2.2923 20 1 6.3732 2.6028 3.4867 21 1 7.7735 4.3035 2.4731 22 6 1.9992 -0.2246 -1.3629 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3009 2.1198 -0.3941 28 1 3.9458 0.5068 -0.5954 29 1 1.2161 1.8308 -2.8067 30 1 1.6043 3.3965 -4.6669 31 1 3.8624 4.2908 -5.0727 32 1 5.7318 3.6210 -3.6169 33 1 7.0234 1.6187 -3.0201 34 1 7.0407 3.1696 -2.4198 35 1 8.1951 1.5004 1.2499 36 1 1.3009 0.0441 -2.1556 37 1 2.4459 -1.2089 -1.5038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260156117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:02 Heat of formation + Delta-G solvation = 66.542939 kcal Electronic energy + Delta-G solvation = -18147.526202 eV Core-core repulsion = 15504.731851 eV Total energy + Delta-G solvation = -2642.794350 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16277 -38.15565 -34.57709 -31.89735 -31.66719 -29.16214 -28.73586 -26.06729 -25.71151 -23.99769 -23.01292 -21.29541 -19.77180 -18.89562 -16.49414 -16.42489 -15.56386 -14.97743 -14.64177 -14.53187 -14.37116 -13.89190 -13.75758 -12.93245 -12.72998 -12.44638 -12.42710 -12.13222 -11.91674 -11.42635 -11.32431 -10.98745 -10.87238 -10.53538 -10.50256 -10.29723 -9.99663 -9.65493 -9.24975 -8.57436 -8.43273 -8.22210 -7.79788 -7.08515 -5.86417 -4.00870 1.89586 2.03821 3.34018 3.42677 3.45729 4.22879 4.28731 4.52433 5.02138 5.12469 5.31286 5.36467 5.40488 5.44768 5.49159 5.55131 5.67181 5.76633 5.84348 5.89151 6.00391 6.05085 6.20328 6.26071 6.30667 6.52026 6.55493 6.65698 6.79615 6.99427 7.07465 7.24421 7.31221 7.55810 7.62908 7.92447 8.19908 8.64497 9.00162 9.15981 9.67719 11.17716 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.009736 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.438095 B = 2875.266178 C = 3981.930658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.484 5.484 3 C 0.016 3.984 4 C -0.064 4.064 5 C -0.074 4.074 6 C -0.121 4.121 7 C -0.148 4.148 8 C -0.124 4.124 9 C -0.133 4.133 10 C -0.062 4.062 11 C 0.253 3.747 12 H 0.052 0.948 13 N -0.812 5.812 14 C -0.523 4.523 15 H 0.053 0.947 16 C 0.085 3.915 17 N -0.846 5.846 18 Si 0.880 3.120 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.001 3.999 23 H 0.029 0.971 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.298 0.702 34 H 0.318 0.682 35 H 0.255 0.745 36 H 0.067 0.933 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 -0.448 -6.252 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.206 5.206 3 C -0.112 4.112 4 C -0.083 4.083 5 C -0.075 4.075 6 C -0.139 4.139 7 C -0.166 4.166 8 C -0.142 4.142 9 C -0.151 4.151 10 C -0.065 4.065 11 C 0.143 3.857 12 H 0.070 0.930 13 N -0.338 5.338 14 C -0.562 4.562 15 H 0.071 0.929 16 C -0.122 4.122 17 N -0.480 5.480 18 Si 0.708 3.292 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.127 4.127 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.068 -1.274 -4.942 11.287 hybrid contribution -1.074 1.578 -0.605 2.002 sum -11.141 0.304 -5.547 12.449 Atomic orbital electron populations 1.22834 0.90599 1.01787 1.00643 1.68476 1.08101 1.19599 1.24463 1.23970 0.96186 0.90194 1.00896 1.21915 0.99395 0.93434 0.93533 1.19523 0.93063 0.98573 0.96318 1.20855 0.97982 0.98880 0.96231 1.20824 0.96741 0.99978 0.99044 1.20989 0.93326 1.00293 0.99613 1.21023 0.98848 0.99067 0.96190 1.21688 0.97377 0.93166 0.94251 1.18255 0.80141 0.97317 0.89995 0.93041 1.59171 1.38256 1.08641 1.27757 1.20763 1.12665 1.23366 0.99394 0.92898 1.24923 0.95115 0.94697 0.97440 1.70106 1.13426 1.31900 1.32618 0.86749 0.77851 0.80388 0.84208 1.19911 1.21043 1.21146 1.24195 0.97300 1.00531 0.90698 0.95211 0.91592 0.91653 0.88729 0.91831 0.85676 0.87563 0.87359 0.87259 0.86639 0.89156 0.86929 0.93516 0.91512 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 9.64 60.06 0.58 0.46 16 2 N -0.48 -7.59 6.56 -246.66 -1.62 -9.20 16 3 C 0.02 0.27 7.45 -2.77 -0.02 0.25 16 4 C -0.06 -1.16 3.70 -90.84 -0.34 -1.50 16 5 C -0.07 -1.37 5.29 -104.62 -0.55 -1.92 16 6 C -0.12 -1.98 8.62 -39.58 -0.34 -2.32 16 7 C -0.15 -2.28 10.05 -39.59 -0.40 -2.68 16 8 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 9 C -0.13 -2.45 9.25 -39.58 -0.37 -2.82 16 10 C -0.06 -1.27 5.01 -104.62 -0.52 -1.80 16 11 C 0.25 5.97 2.19 -70.02 -0.15 5.82 16 12 H 0.05 1.34 6.54 -51.93 -0.34 1.01 16 13 N -0.81 -18.51 8.02 -6.65 -0.05 -18.56 16 14 C -0.52 -13.77 8.40 -34.44 -0.29 -14.06 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 16 C 0.09 2.31 5.39 -17.82 -0.10 2.22 16 17 N -0.85 -24.10 12.77 55.43 0.71 -23.39 16 18 Si 0.88 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C 0.00 0.02 7.34 -2.77 -0.02 0.00 16 23 H 0.03 0.34 7.62 -51.93 -0.40 -0.05 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 27 H 0.06 1.00 7.52 -51.93 -0.39 0.61 16 28 H 0.13 2.65 5.90 -51.93 -0.31 2.35 16 29 H 0.11 1.51 6.66 -52.49 -0.35 1.16 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 2.04 6.25 -52.49 -0.33 1.71 16 33 H 0.30 6.10 9.06 -39.29 -0.36 5.74 16 34 H 0.32 6.93 7.28 -39.29 -0.29 6.65 16 35 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.07 0.92 5.79 -51.93 -0.30 0.62 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 297.92 15.07 4.49 4.49 Total: -1.00 -28.54 297.92 -9.54 -38.08 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.13 Total: 13.24 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -2.92 Total: -20.76 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.96 Total: -51.15 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.54 -9.54 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.619 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds