Wall clock time and date at job start Mon Mar 30 2020 04:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47959 * 110.99826 * 2 1 4 4 C 1.53939 * 86.17935 * 222.42087 * 3 2 1 5 5 C 1.50699 * 113.73238 * 138.07949 * 4 3 2 6 6 C 1.38261 * 120.00439 * 300.25370 * 5 4 3 7 7 C 1.38209 * 119.99991 * 180.27633 * 6 5 4 8 8 C 1.38256 * 120.00220 * 359.74607 * 7 6 5 9 9 C 1.38218 * 119.99993 * 359.97438 * 8 7 6 10 10 C 1.38217 * 119.99985 * 120.00326 * 5 4 3 11 11 C 1.50707 * 120.00080 * 359.97438 * 10 5 4 12 12 H 1.08997 * 109.46649 * 39.72805 * 11 10 5 13 13 N 1.46895 * 109.47234 * 159.73227 * 11 10 5 14 14 C 1.50695 * 109.47014 * 279.73262 * 11 10 5 15 15 H 1.08004 * 120.00546 * 0.27454 * 14 11 10 16 16 C 1.37885 * 119.99721 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00035 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99853 * 179.97438 * 16 14 11 19 19 H 1.48494 * 109.47228 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46793 * 120.00131 * 18 16 14 21 21 H 1.48500 * 109.47000 * 240.00224 * 18 16 14 22 22 C 1.47958 * 110.99793 * 260.64220 * 2 1 3 23 23 H 1.09001 * 109.47510 * 59.99592 * 1 2 3 24 24 H 1.08996 * 109.47324 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46923 * 299.99774 * 1 2 3 26 26 H 1.08999 * 113.76055 * 108.10619 * 3 2 1 27 27 H 1.09001 * 113.76230 * 336.73347 * 3 2 1 28 28 H 1.09004 * 113.73238 * 269.25671 * 4 3 2 29 29 H 1.07999 * 119.99485 * 0.03854 * 6 5 4 30 30 H 1.07996 * 119.99874 * 179.76825 * 7 6 5 31 31 H 1.07995 * 119.99935 * 179.97438 * 8 7 6 32 32 H 1.07996 * 120.00063 * 180.02562 * 9 8 7 33 33 H 1.00907 * 110.99817 * 296.04438 * 13 11 10 34 34 H 1.00895 * 111.00026 * 59.99561 * 13 11 10 35 35 H 0.97000 * 119.99706 * 179.97438 * 17 16 14 36 36 H 1.09004 * 113.76002 * 23.26396 * 22 2 1 37 37 H 1.09004 * 113.76245 * 251.89925 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3813 0.0000 4 6 3.0210 0.8793 -1.0361 5 6 3.2573 1.8423 -2.1709 6 6 2.2064 2.2231 -2.9847 7 6 2.4244 3.1020 -4.0289 8 6 3.6921 3.6044 -4.2565 9 6 4.7415 3.2282 -3.4394 10 6 4.5235 2.3490 -2.3949 11 6 5.6678 1.9388 -1.5041 12 1 5.5849 0.8771 -1.2719 13 7 6.9401 2.1915 -2.1936 14 6 5.6214 2.7374 -0.2270 15 1 4.8387 3.4657 -0.0735 16 6 6.5745 2.5339 0.7484 17 7 7.5244 1.6433 0.5639 18 14 6.5174 3.5243 2.3312 19 1 5.3597 4.4534 2.2923 20 1 6.3732 2.6028 3.4867 21 1 7.7735 4.3035 2.4731 22 6 1.9992 -0.2246 -1.3629 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.4460 1.6802 0.9482 27 1 1.3009 2.1198 -0.3941 28 1 3.9458 0.5068 -0.5954 29 1 1.2161 1.8308 -2.8067 30 1 1.6043 3.3965 -4.6669 31 1 3.8624 4.2908 -5.0727 32 1 5.7318 3.6210 -3.6169 33 1 7.0234 1.6187 -3.0201 34 1 7.0407 3.1696 -2.4198 35 1 8.1951 1.5004 1.2499 36 1 1.3009 0.0441 -2.1556 37 1 2.4459 -1.2089 -1.5038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156117.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:02 Heat of formation + Delta-G solvation = 46.421630 kcal Electronic energy + Delta-G solvation = -18148.398727 eV Core-core repulsion = 15504.731851 eV Total energy + Delta-G solvation = -2643.666876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.48089 -39.49641 -36.32690 -33.64468 -33.17796 -30.64060 -29.97692 -27.99322 -27.01118 -25.21368 -24.69594 -22.63342 -21.31301 -20.22514 -18.47225 -17.80879 -16.93905 -16.60966 -16.15574 -15.96764 -15.77350 -15.45873 -15.11336 -14.41419 -14.25850 -13.97122 -13.64697 -13.56957 -13.28169 -13.08405 -12.78710 -12.70189 -12.42135 -12.21296 -11.92228 -11.78891 -11.39583 -11.28343 -11.17283 -10.53333 -9.75276 -9.56619 -9.26350 -8.86795 -7.94973 -6.14373 0.57168 0.67524 1.40126 1.43266 1.52364 2.47114 2.97329 3.01096 3.28824 3.73408 3.91272 4.08778 4.19964 4.24146 4.30967 4.36350 4.42667 4.48305 4.51655 4.60123 4.67333 4.82719 4.88586 4.91399 4.98528 5.18362 5.29148 5.35297 5.37414 5.42627 5.69284 5.74337 5.82650 5.97916 6.14490 6.21391 6.32350 6.71275 7.13726 7.28918 7.56929 9.08168 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.009736 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.438095 B = 2875.266178 C = 3981.930658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.502 5.502 3 C 0.021 3.979 4 C -0.074 4.074 5 C -0.084 4.084 6 C -0.120 4.120 7 C -0.136 4.136 8 C -0.124 4.124 9 C -0.144 4.144 10 C -0.096 4.096 11 C 0.262 3.738 12 H 0.015 0.985 13 N -0.823 5.823 14 C -0.522 4.522 15 H 0.040 0.960 16 C 0.037 3.963 17 N -0.880 5.880 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.017 3.983 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.115 0.885 33 H 0.310 0.690 34 H 0.323 0.677 35 H 0.253 0.747 36 H 0.091 0.909 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 0.484 -7.682 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.224 5.224 3 C -0.107 4.107 4 C -0.092 4.092 5 C -0.085 4.085 6 C -0.138 4.138 7 C -0.154 4.154 8 C -0.141 4.141 9 C -0.162 4.162 10 C -0.098 4.098 11 C 0.152 3.848 12 H 0.033 0.967 13 N -0.351 5.351 14 C -0.561 4.561 15 H 0.059 0.941 16 C -0.166 4.166 17 N -0.516 5.516 18 Si 0.764 3.236 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.112 4.112 23 H 0.064 0.936 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.151 0.849 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.133 0.867 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.687 -0.337 -6.375 14.203 hybrid contribution -0.330 1.276 -0.229 1.338 sum -13.017 0.939 -6.604 14.627 Atomic orbital electron populations 1.22911 0.88255 1.03040 1.01707 1.68422 1.10564 1.18538 1.24905 1.23872 0.96162 0.91391 0.99307 1.21756 0.98385 0.94978 0.94127 1.19646 0.93216 0.98753 0.96923 1.21114 0.98245 0.98731 0.95703 1.21305 0.97474 0.98187 0.98437 1.21338 0.92895 1.00263 0.99641 1.21124 0.99919 0.98963 0.96241 1.21370 0.97129 0.95825 0.95490 1.17828 0.82034 0.94796 0.90157 0.96746 1.58988 1.38435 1.09192 1.28478 1.20966 1.11672 1.22660 1.00811 0.94130 1.25586 0.95075 0.95694 1.00234 1.70224 1.14300 1.33527 1.33566 0.85843 0.77749 0.79075 0.80897 1.19536 1.20916 1.20924 1.24145 0.96434 0.99384 0.91211 0.93590 0.90267 0.91108 0.91202 0.90157 0.90235 0.84878 0.83466 0.84136 0.86714 0.87844 0.86417 0.93767 0.89085 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.23 9.64 127.69 1.23 1.00 16 2 N -0.50 -15.17 6.56 -934.30 -6.13 -21.30 16 3 C 0.02 0.71 7.45 86.41 0.64 1.36 16 4 C -0.07 -2.71 3.70 -10.89 -0.04 -2.75 16 5 C -0.08 -3.09 5.29 -19.86 -0.11 -3.20 16 6 C -0.12 -3.51 8.62 22.27 0.19 -3.32 16 7 C -0.14 -3.60 10.05 22.27 0.22 -3.38 16 8 C -0.12 -3.58 10.05 22.27 0.22 -3.35 16 9 C -0.14 -5.19 9.25 22.27 0.21 -4.99 16 10 C -0.10 -3.97 5.01 -19.86 -0.10 -4.07 16 11 C 0.26 12.97 2.19 43.42 0.09 13.07 16 12 H 0.01 0.83 6.54 -2.39 -0.02 0.82 16 13 N -0.82 -38.94 8.02 -174.96 -1.40 -40.34 16 14 C -0.52 -28.58 8.40 25.60 0.22 -28.37 16 15 H 0.04 2.27 7.74 -2.91 -0.02 2.24 16 16 C 0.04 2.10 5.39 84.66 0.46 2.55 16 17 N -0.88 -52.03 12.77 21.45 0.27 -51.76 16 18 Si 0.94 44.57 29.54 68.60 2.03 46.60 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 C 0.02 0.48 7.34 86.40 0.63 1.11 16 23 H 0.05 0.88 7.62 -2.39 -0.02 0.86 16 24 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.08 2.37 7.52 -2.39 -0.02 2.36 16 28 H 0.08 3.65 5.90 -2.39 -0.01 3.64 16 29 H 0.13 3.14 6.66 -2.91 -0.02 3.13 16 30 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.11 4.02 6.25 -2.91 -0.02 4.00 16 33 H 0.31 13.17 9.06 -89.69 -0.81 12.35 16 34 H 0.32 14.48 7.28 -89.70 -0.65 13.83 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.09 2.18 5.79 -2.39 -0.01 2.17 16 37 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -63.46 297.92 -1.73 -65.19 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.38 Total: 35.94 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 3.88 Total: -34.33 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -7.25 Total: -113.40 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.46 -1.73 -65.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156117.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.609 kcal (2) G-P(sol) polarization free energy of solvation -63.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds