Wall clock time and date at job start Mon Mar 30 2020 04:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46420 * 111.00115 * 2 1 4 4 C 1.53389 * 108.65375 * 178.86101 * 3 2 1 5 5 C 1.53048 * 107.91601 * 291.71737 * 4 3 2 6 6 C 1.50699 * 109.44046 * 287.29149 * 5 4 3 7 7 H 1.07996 * 120.00433 * 117.52832 * 6 5 4 8 8 C 1.37883 * 120.00022 * 297.53001 * 6 5 4 9 9 N 1.31516 * 120.00077 * 3.78886 * 8 6 5 10 10 Si 1.86800 * 119.99745 * 183.78875 * 8 6 5 11 11 H 1.48502 * 109.47093 * 90.00319 * 10 8 6 12 12 H 1.48504 * 109.46827 * 209.99608 * 10 8 6 13 13 H 1.48494 * 109.47374 * 329.99874 * 10 8 6 14 14 C 1.52993 * 109.44203 * 167.36421 * 5 4 3 15 15 N 1.46904 * 109.47098 * 295.92056 * 14 5 4 16 16 C 1.50797 * 109.64946 * 47.30787 * 5 4 3 17 17 C 1.38607 * 118.12257 * 164.53690 * 16 5 4 18 18 C 1.38058 * 120.49271 * 179.76336 * 17 16 5 19 19 C 1.38307 * 119.88179 * 359.94448 * 18 17 16 20 20 C 1.37806 * 119.95995 * 0.14280 * 19 18 17 21 21 C 1.38379 * 122.01754 * 344.48346 * 16 5 4 22 22 H 1.09001 * 109.47146 * 52.16083 * 1 2 3 23 23 H 1.09002 * 109.47167 * 172.16453 * 1 2 3 24 24 H 1.08998 * 109.46844 * 292.16281 * 1 2 3 25 25 H 1.08996 * 109.60586 * 59.10706 * 3 2 1 26 26 H 1.09008 * 109.60539 * 298.61002 * 3 2 1 27 27 H 1.09007 * 109.76619 * 172.11501 * 4 3 2 28 28 H 1.08991 * 109.77557 * 51.32448 * 4 3 2 29 29 H 0.96994 * 119.99919 * 180.02562 * 9 8 6 30 30 H 1.08999 * 109.47288 * 175.92183 * 14 5 4 31 31 H 1.09001 * 109.47082 * 55.91533 * 14 5 4 32 32 H 1.00902 * 110.99760 * 173.42953 * 15 14 5 33 33 H 1.00901 * 110.99821 * 297.38860 * 15 14 5 34 34 H 1.08001 * 119.75611 * 359.73233 * 17 16 5 35 35 H 1.07991 * 120.06019 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.02177 * 180.12221 * 19 18 17 37 37 H 1.08001 * 119.79181 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3669 0.0000 4 6 3.5261 1.3042 0.0289 5 6 3.9492 0.7562 1.3938 6 6 3.7246 1.8089 2.4485 7 1 3.0252 1.6283 3.2514 8 6 4.4119 3.0027 2.3885 9 7 5.2071 3.2532 1.3713 10 14 4.2135 4.2642 3.7518 11 1 5.2301 4.0178 4.8059 12 1 4.3987 5.6283 3.1948 13 1 2.8542 4.1494 4.3385 14 6 5.4323 0.3826 1.3551 15 7 5.6370 -0.7106 0.3953 16 6 3.1319 -0.4671 1.7246 17 6 3.5748 -1.2921 2.7466 18 6 2.8618 -2.4222 3.0935 19 6 1.6958 -2.7355 2.4187 20 6 1.2501 -1.9211 1.4003 21 6 1.9686 -0.7786 1.0430 22 1 -0.3633 0.6304 -0.8116 23 1 -0.3633 -1.0181 -0.1401 24 1 -0.3633 0.3877 0.9517 25 1 1.6327 1.8973 0.8811 26 1 1.6658 1.8846 -0.9015 27 1 3.9387 2.3034 -0.1113 28 1 3.8831 0.6431 -0.7606 29 1 5.6908 4.0929 1.3293 30 1 5.7519 0.0605 2.3461 31 1 6.0175 1.2495 1.0484 32 1 6.6195 -0.9039 0.2715 33 1 5.1383 -1.5402 0.6804 34 1 4.4848 -1.0493 3.2752 35 1 3.2135 -3.0603 3.8906 36 1 1.1352 -3.6180 2.6895 37 1 0.3395 -2.1685 0.8750 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260171435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:21 Heat of formation + Delta-G solvation = 37.492048 kcal Electronic energy + Delta-G solvation = -18917.557365 eV Core-core repulsion = 16273.503273 eV Total energy + Delta-G solvation = -2644.054091 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90787 -36.05391 -35.79042 -32.29951 -31.11477 -29.36629 -29.02381 -27.14514 -24.61085 -23.71032 -22.25868 -21.94150 -19.93187 -18.35602 -16.47136 -16.14325 -15.24388 -15.01818 -14.55548 -14.49311 -13.78893 -13.67136 -13.20709 -12.99392 -12.81589 -12.20011 -12.04946 -11.80609 -11.47077 -11.26855 -11.02950 -10.90029 -10.67116 -10.59413 -10.39774 -10.11642 -9.54607 -9.24279 -9.16008 -8.84817 -8.46966 -7.87700 -7.52219 -6.86135 -6.05150 -4.16084 2.13855 2.23808 3.23998 3.31865 3.35397 4.30711 4.39471 4.75587 5.16274 5.41805 5.55964 5.65983 5.73412 5.79796 5.83758 6.06792 6.13127 6.13999 6.27320 6.29900 6.45555 6.62052 6.69734 6.81314 6.99804 7.05260 7.12322 7.26422 7.32907 7.46435 7.61452 7.64471 7.84300 7.94289 8.05698 8.11243 8.22863 8.43224 8.48319 8.85866 9.49042 10.94250 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.009830 C = 0.009145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.245786 B = 2847.746224 C = 3061.035264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.497 5.497 3 C 0.062 3.938 4 C -0.101 4.101 5 C 0.114 3.886 6 C -0.502 4.502 7 H 0.054 0.946 8 C 0.068 3.932 9 N -0.882 5.882 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.075 3.925 15 N -0.851 5.851 16 C -0.060 4.060 17 C -0.100 4.100 18 C -0.162 4.162 19 C -0.120 4.120 20 C -0.173 4.173 21 C 0.124 3.876 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.032 0.968 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.262 0.738 30 H 0.001 0.999 31 H 0.103 0.897 32 H 0.319 0.681 33 H 0.324 0.676 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 -6.515 -0.480 7.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.211 5.211 3 C -0.064 4.064 4 C -0.139 4.139 5 C 0.114 3.886 6 C -0.540 4.540 7 H 0.073 0.927 8 C -0.134 4.134 9 N -0.520 5.520 10 Si 0.718 3.282 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C -0.055 4.055 15 N -0.379 5.379 16 C -0.063 4.063 17 C -0.119 4.119 18 C -0.181 4.181 19 C -0.139 4.139 20 C -0.194 4.194 21 C 0.025 3.975 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.019 0.981 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.705 -5.984 -1.570 7.773 hybrid contribution 0.059 0.436 2.279 2.321 sum -4.646 -5.548 0.710 7.271 Atomic orbital electron populations 1.22450 0.86961 1.01933 1.00626 1.58191 1.06948 1.14954 1.40966 1.22259 0.98912 0.85200 0.99981 1.21696 0.90528 1.03952 0.97697 1.17196 0.89506 0.88079 0.93861 1.21062 1.24205 0.99315 1.09466 0.92744 1.24913 0.95153 0.97770 0.95560 1.69801 1.28806 1.24587 1.28837 0.86626 0.78534 0.80759 0.82324 1.20681 1.21177 1.20039 1.22022 0.99588 0.93430 0.90482 1.58910 1.13633 1.11272 1.54078 1.20161 0.95012 0.97302 0.93823 1.21015 0.99757 0.94011 0.97122 1.20847 0.96908 0.98774 1.01553 1.20630 0.96981 0.99211 0.97095 1.20987 1.01221 0.96684 1.00511 1.18653 0.95101 0.93929 0.89842 0.91496 0.91353 0.94983 0.93246 0.92240 0.88216 0.92925 0.92796 0.98060 0.87855 0.87068 0.86414 0.86702 0.87545 0.87446 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 8.88 60.07 0.53 0.95 16 2 N -0.50 -9.74 4.78 -179.12 -0.86 -10.60 16 3 C 0.06 1.31 5.44 -3.88 -0.02 1.29 16 4 C -0.10 -2.36 4.78 -26.51 -0.13 -2.49 16 5 C 0.11 2.69 0.20 -156.74 -0.03 2.66 16 6 C -0.50 -12.95 7.04 -34.44 -0.24 -13.19 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.07 1.74 5.09 -17.82 -0.09 1.65 16 9 N -0.88 -23.02 9.40 55.43 0.52 -22.50 16 10 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.07 1.71 4.95 -3.83 -0.02 1.69 16 15 N -0.85 -16.99 8.74 -10.37 -0.09 -17.09 16 16 C -0.06 -1.31 3.71 -104.39 -0.39 -1.70 16 17 C -0.10 -2.01 8.22 -39.51 -0.32 -2.34 16 18 C -0.16 -2.83 10.05 -39.62 -0.40 -3.23 16 19 C -0.12 -2.01 10.03 -39.71 -0.40 -2.41 16 20 C -0.17 -3.10 9.02 -39.23 -0.35 -3.46 16 21 C 0.12 2.54 5.83 -83.85 -0.49 2.05 16 22 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 23 H 0.07 0.94 6.14 -51.93 -0.32 0.62 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 1.13 7.36 -51.93 -0.38 0.74 16 26 H 0.06 1.14 8.14 -51.92 -0.42 0.71 16 27 H 0.10 2.56 5.94 -51.92 -0.31 2.25 16 28 H 0.05 1.27 7.44 -51.93 -0.39 0.88 16 29 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.00 0.03 6.71 -51.93 -0.35 -0.32 16 31 H 0.10 2.62 6.14 -51.93 -0.32 2.31 16 32 H 0.32 5.59 9.08 -39.29 -0.36 5.24 16 33 H 0.32 6.33 7.37 -39.29 -0.29 6.04 16 34 H 0.12 2.32 6.58 -52.49 -0.35 1.98 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.11 1.77 5.92 -52.49 -0.31 1.46 16 LS Contribution 282.24 15.07 4.25 4.25 Total: -1.00 -26.63 282.24 -8.56 -35.19 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -2.35 Total: -18.53 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.43 Total: -50.19 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.63 -8.56 -35.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.677 kcal (2) G-P(sol) polarization free energy of solvation -26.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds