Wall clock time and date at job start Mon Mar 30 2020 04:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46420 * 111.00115 * 2 1 4 4 C 1.53389 * 108.65375 * 178.86101 * 3 2 1 5 5 C 1.53048 * 107.91601 * 291.71737 * 4 3 2 6 6 C 1.50699 * 109.44046 * 287.29149 * 5 4 3 7 7 H 1.07996 * 120.00433 * 117.52832 * 6 5 4 8 8 C 1.37883 * 120.00022 * 297.53001 * 6 5 4 9 9 N 1.31516 * 120.00077 * 3.78886 * 8 6 5 10 10 Si 1.86800 * 119.99745 * 183.78875 * 8 6 5 11 11 H 1.48502 * 109.47093 * 90.00319 * 10 8 6 12 12 H 1.48504 * 109.46827 * 209.99608 * 10 8 6 13 13 H 1.48494 * 109.47374 * 329.99874 * 10 8 6 14 14 C 1.52993 * 109.44203 * 167.36421 * 5 4 3 15 15 N 1.46904 * 109.47098 * 295.92056 * 14 5 4 16 16 C 1.50797 * 109.64946 * 47.30787 * 5 4 3 17 17 C 1.38607 * 118.12257 * 164.53690 * 16 5 4 18 18 C 1.38058 * 120.49271 * 179.76336 * 17 16 5 19 19 C 1.38307 * 119.88179 * 359.94448 * 18 17 16 20 20 C 1.37806 * 119.95995 * 0.14280 * 19 18 17 21 21 C 1.38379 * 122.01754 * 344.48346 * 16 5 4 22 22 H 1.09001 * 109.47146 * 52.16083 * 1 2 3 23 23 H 1.09002 * 109.47167 * 172.16453 * 1 2 3 24 24 H 1.08998 * 109.46844 * 292.16281 * 1 2 3 25 25 H 1.08996 * 109.60586 * 59.10706 * 3 2 1 26 26 H 1.09008 * 109.60539 * 298.61002 * 3 2 1 27 27 H 1.09007 * 109.76619 * 172.11501 * 4 3 2 28 28 H 1.08991 * 109.77557 * 51.32448 * 4 3 2 29 29 H 0.96994 * 119.99919 * 180.02562 * 9 8 6 30 30 H 1.08999 * 109.47288 * 175.92183 * 14 5 4 31 31 H 1.09001 * 109.47082 * 55.91533 * 14 5 4 32 32 H 1.00902 * 110.99760 * 173.42953 * 15 14 5 33 33 H 1.00901 * 110.99821 * 297.38860 * 15 14 5 34 34 H 1.08001 * 119.75611 * 359.73233 * 17 16 5 35 35 H 1.07991 * 120.06019 * 179.97438 * 18 17 16 36 36 H 1.08004 * 120.02177 * 180.12221 * 19 18 17 37 37 H 1.08001 * 119.79181 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3669 0.0000 4 6 3.5261 1.3042 0.0289 5 6 3.9492 0.7562 1.3938 6 6 3.7246 1.8089 2.4485 7 1 3.0252 1.6283 3.2514 8 6 4.4119 3.0027 2.3885 9 7 5.2071 3.2532 1.3713 10 14 4.2135 4.2642 3.7518 11 1 5.2301 4.0178 4.8059 12 1 4.3987 5.6283 3.1948 13 1 2.8542 4.1494 4.3385 14 6 5.4323 0.3826 1.3551 15 7 5.6370 -0.7106 0.3953 16 6 3.1319 -0.4671 1.7246 17 6 3.5748 -1.2921 2.7466 18 6 2.8618 -2.4222 3.0935 19 6 1.6958 -2.7355 2.4187 20 6 1.2501 -1.9211 1.4003 21 6 1.9686 -0.7786 1.0430 22 1 -0.3633 0.6304 -0.8116 23 1 -0.3633 -1.0181 -0.1401 24 1 -0.3633 0.3877 0.9517 25 1 1.6327 1.8973 0.8811 26 1 1.6658 1.8846 -0.9015 27 1 3.9387 2.3034 -0.1113 28 1 3.8831 0.6431 -0.7606 29 1 5.6908 4.0929 1.3293 30 1 5.7519 0.0605 2.3461 31 1 6.0175 1.2495 1.0484 32 1 6.6195 -0.9039 0.2715 33 1 5.1383 -1.5402 0.6804 34 1 4.4848 -1.0493 3.2752 35 1 3.2135 -3.0603 3.8906 36 1 1.1352 -3.6180 2.6895 37 1 0.3395 -2.1685 0.8750 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260171435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:21 Heat of formation + Delta-G solvation = 20.598719 kcal Electronic energy + Delta-G solvation = -18918.289914 eV Core-core repulsion = 16273.503273 eV Total energy + Delta-G solvation = -2644.786641 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44565 -37.59260 -37.40687 -34.18727 -32.79718 -30.90233 -30.49457 -28.79177 -26.34131 -25.36676 -23.87774 -23.49348 -21.50877 -20.08934 -18.15159 -17.74411 -16.90393 -16.75764 -16.20593 -16.07692 -15.36624 -15.13192 -14.74156 -14.60205 -14.43811 -13.96268 -13.65103 -13.28620 -12.94100 -12.81333 -12.75428 -12.56863 -12.51862 -12.28234 -12.04098 -11.97731 -11.25064 -10.99144 -10.81982 -10.51497 -10.40979 -9.39381 -9.22067 -8.37262 -8.00399 -6.18551 0.69193 0.79278 1.38154 1.41886 1.49291 2.42603 2.91478 3.17388 3.28619 4.05892 4.14196 4.20665 4.26759 4.42684 4.45754 4.57452 4.68475 4.70866 4.76409 4.89029 4.92701 4.96861 5.01152 5.20995 5.30378 5.45854 5.53418 5.57065 5.67100 5.75262 5.86814 5.98545 6.08784 6.25516 6.33925 6.42619 6.61472 6.64521 6.81016 6.93650 7.48237 8.95131 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.009830 C = 0.009145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.245786 B = 2847.746224 C = 3061.035264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.503 5.503 3 C 0.071 3.929 4 C -0.093 4.093 5 C 0.112 3.888 6 C -0.512 4.512 7 H 0.035 0.965 8 C 0.032 3.968 9 N -0.897 5.897 10 Si 0.940 3.060 11 H -0.279 1.279 12 H -0.282 1.282 13 H -0.278 1.278 14 C 0.088 3.912 15 N -0.846 5.846 16 C -0.090 4.090 17 C -0.116 4.116 18 C -0.158 4.158 19 C -0.111 4.111 20 C -0.171 4.171 21 C 0.100 3.900 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.026 0.974 25 H 0.025 0.975 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.261 0.739 30 H -0.009 1.009 31 H 0.075 0.925 32 H 0.334 0.666 33 H 0.330 0.670 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.216 -8.360 -0.253 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.216 5.216 3 C -0.055 4.055 4 C -0.131 4.131 5 C 0.111 3.889 6 C -0.551 4.551 7 H 0.053 0.947 8 C -0.168 4.168 9 N -0.536 5.536 10 Si 0.767 3.233 11 H -0.205 1.205 12 H -0.208 1.208 13 H -0.203 1.203 14 C -0.043 4.043 15 N -0.375 5.375 16 C -0.092 4.092 17 C -0.134 4.134 18 C -0.177 4.177 19 C -0.129 4.129 20 C -0.191 4.191 21 C 0.001 3.999 22 H 0.103 0.897 23 H 0.111 0.889 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.093 0.907 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.339 -7.845 -1.345 10.175 hybrid contribution 0.548 0.928 2.217 2.465 sum -5.791 -6.917 0.871 9.063 Atomic orbital electron populations 1.22592 0.84423 1.03922 1.01101 1.58227 1.09134 1.13380 1.40906 1.22042 0.97229 0.86615 0.99616 1.21487 0.92361 1.01804 0.97439 1.17092 0.90062 0.88714 0.92987 1.21174 1.23823 1.00449 1.09625 0.94670 1.25452 0.95113 0.99139 0.97137 1.69922 1.29154 1.24758 1.29739 0.85842 0.78115 0.79082 0.80275 1.20476 1.20751 1.20325 1.21702 0.99151 0.93158 0.90262 1.58783 1.14892 1.10875 1.52971 1.20055 0.96121 0.97379 0.95689 1.21018 1.00035 0.95274 0.97118 1.21171 0.96774 0.97806 1.01921 1.21096 0.96375 0.99805 0.95667 1.21327 1.01642 0.95539 1.00640 1.18932 0.95248 0.95299 0.90426 0.89701 0.88900 0.95521 0.95638 0.90551 0.91104 0.94041 0.92922 0.99122 0.90706 0.85475 0.85736 0.88034 0.84688 0.83419 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 8.88 127.69 1.13 1.86 16 2 N -0.50 -19.04 4.78 -720.62 -3.44 -22.48 16 3 C 0.07 3.02 5.44 86.52 0.47 3.49 16 4 C -0.09 -4.47 4.78 30.74 0.15 -4.33 16 5 C 0.11 5.43 0.20 -53.63 -0.01 5.42 16 6 C -0.51 -27.31 7.04 25.60 0.18 -27.13 16 7 H 0.03 1.96 7.74 -2.91 -0.02 1.94 16 8 C 0.03 1.66 5.09 84.66 0.43 2.10 16 9 N -0.90 -48.40 9.40 21.45 0.20 -48.20 16 10 Si 0.94 42.76 29.54 68.60 2.03 44.79 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 C 0.09 4.15 4.95 86.30 0.43 4.58 16 15 N -0.85 -34.11 8.74 -186.72 -1.63 -35.74 16 16 C -0.09 -3.90 3.71 -19.71 -0.07 -3.97 16 17 C -0.12 -4.58 8.22 22.32 0.18 -4.40 16 18 C -0.16 -5.06 10.05 22.24 0.22 -4.84 16 19 C -0.11 -3.24 10.03 22.18 0.22 -3.02 16 20 C -0.17 -5.53 9.02 22.50 0.20 -5.32 16 21 C 0.10 3.95 5.83 38.30 0.22 4.17 16 22 H 0.08 2.11 8.10 -2.39 -0.02 2.09 16 23 H 0.09 2.19 6.14 -2.39 -0.01 2.18 16 24 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.03 1.19 7.36 -2.39 -0.02 1.17 16 26 H 0.08 2.90 8.14 -2.38 -0.02 2.88 16 27 H 0.07 3.79 5.94 -2.38 -0.01 3.78 16 28 H 0.04 2.04 7.44 -2.39 -0.02 2.02 16 29 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 30 H -0.01 -0.45 6.71 -2.39 -0.02 -0.47 16 31 H 0.07 3.96 6.14 -2.39 -0.01 3.95 16 32 H 0.33 11.70 9.08 -89.69 -0.81 10.89 16 33 H 0.33 12.83 7.37 -89.69 -0.66 12.17 16 34 H 0.10 4.18 6.58 -2.91 -0.02 4.16 16 35 H 0.14 3.51 8.06 -2.92 -0.02 3.49 16 36 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.14 3.70 5.92 -2.91 -0.02 3.69 16 Total: -1.00 -58.58 282.24 0.53 -58.05 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -0.38 Total: 34.98 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 3.76 Total: -31.40 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -4.87 Total: -106.42 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -58.58 0.53 -58.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260171435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.646 kcal (2) G-P(sol) polarization free energy of solvation -58.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds