Wall clock time and date at job start Mon Mar 30 2020 04:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47163 * 111.00093 * 2 1 4 4 C 1.52895 * 108.51229 * 165.29496 * 3 2 1 5 5 C 1.50711 * 109.96191 * 50.33692 * 4 3 2 6 6 C 1.38678 * 118.48815 * 163.29201 * 5 4 3 7 7 C 1.37209 * 120.54724 * 179.27331 * 6 5 4 8 8 C 1.38258 * 119.75656 * 0.54871 * 7 6 5 9 9 C 1.38013 * 119.87081 * 359.71914 * 8 7 6 10 10 C 1.50704 * 119.81526 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47329 * 219.98143 * 10 9 8 12 12 N 1.46901 * 109.46746 * 339.97982 * 10 9 8 13 13 C 1.50698 * 109.47005 * 99.97625 * 10 9 8 14 14 H 1.08002 * 120.00143 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99705 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00082 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99835 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.46888 * 89.99839 * 17 15 13 19 19 H 1.48492 * 109.47350 * 209.99979 * 17 15 13 20 20 H 1.48499 * 109.46941 * 330.00176 * 17 15 13 21 21 C 1.37554 * 121.59379 * 343.06077 * 5 4 3 22 22 C 1.46634 * 111.00384 * 237.02235 * 2 1 3 23 23 H 1.09005 * 109.46687 * 182.97672 * 1 2 3 24 24 H 1.09002 * 109.47147 * 302.97607 * 1 2 3 25 25 H 1.08996 * 109.47136 * 62.97969 * 1 2 3 26 26 H 1.09000 * 109.62843 * 285.00108 * 3 2 1 27 27 H 1.08997 * 109.63163 * 45.38683 * 3 2 1 28 28 H 1.08997 * 109.39169 * 170.48520 * 4 3 2 29 29 H 1.08997 * 109.38767 * 290.28717 * 4 3 2 30 30 H 1.08005 * 119.82668 * 359.81746 * 6 5 4 31 31 H 1.07993 * 120.15459 * 180.15878 * 7 6 5 32 32 H 1.08006 * 120.06646 * 179.69746 * 8 7 6 33 33 H 1.00904 * 111.00171 * 296.04377 * 12 10 9 34 34 H 1.00897 * 111.00146 * 60.00299 * 12 10 9 35 35 H 0.97002 * 119.99678 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.30195 * 296.26719 * 22 2 1 37 37 H 1.08998 * 109.29843 * 55.84803 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3739 0.0000 4 6 3.4795 1.3245 0.3680 5 6 4.1890 0.3088 -0.4900 6 6 5.5730 0.3568 -0.5643 7 6 6.2629 -0.5566 -1.3209 8 6 5.5724 -1.5261 -2.0244 9 6 4.1948 -1.5739 -1.9574 10 6 3.4434 -2.6309 -2.7251 11 1 2.5420 -2.1953 -3.1560 12 7 4.2965 -3.1543 -3.8004 13 6 3.0635 -3.7533 -1.7940 14 1 3.3382 -3.7058 -0.7506 15 6 2.3652 -4.8408 -2.2743 16 7 2.0311 -4.8989 -3.5449 17 14 1.8936 -6.2318 -1.1200 18 1 0.5613 -5.9522 -0.5264 19 1 1.8398 -7.5074 -1.8781 20 1 2.9046 -6.3412 -0.0379 21 6 3.4976 -0.6545 -1.1872 22 6 1.9945 -0.7451 -1.1484 23 1 -0.3633 -1.0263 0.0534 24 1 -0.3633 0.5594 0.8621 25 1 -0.3633 0.4669 -0.9155 26 1 1.8795 1.8109 -0.9917 27 1 1.4545 1.9741 0.7308 28 1 3.9248 2.3066 0.2090 29 1 3.5830 1.0457 1.4167 30 1 6.1145 1.1133 -0.0157 31 1 7.3408 -0.5149 -1.3722 32 1 6.1101 -2.2446 -2.6254 33 1 4.5122 -2.4344 -4.4738 34 1 5.1394 -3.5638 -3.4264 35 1 1.5395 -5.6639 -3.8827 36 1 1.6986 -1.7909 -1.0653 37 1 1.5845 -0.3267 -2.0675 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260304127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:12 Heat of formation + Delta-G solvation = 30.745780 kcal Electronic energy + Delta-G solvation = -18250.262744 eV Core-core repulsion = 15605.916113 eV Total energy + Delta-G solvation = -2644.346631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.77436 -36.94669 -34.82551 -32.25237 -31.43202 -30.80087 -28.26353 -26.42922 -25.95937 -23.52360 -22.78696 -22.19836 -19.65370 -18.85632 -16.45953 -16.05469 -15.57302 -15.06565 -14.56892 -14.55307 -14.06631 -13.64094 -13.54600 -13.23598 -12.70167 -12.48557 -12.42103 -12.01557 -11.78014 -11.52408 -11.28141 -11.17598 -10.99157 -10.80600 -10.69039 -10.38689 -10.02494 -9.62611 -9.26917 -8.44550 -8.16524 -7.91168 -7.69291 -7.07840 -5.87725 -4.02281 1.99508 2.09364 3.34366 3.41584 3.46129 4.24177 4.36777 4.53989 5.03324 5.16613 5.35729 5.37831 5.48129 5.56670 5.59691 5.67170 5.75798 5.82303 5.92794 5.99908 6.07488 6.10185 6.24382 6.28544 6.32849 6.50668 6.71682 6.80747 7.02602 7.10687 7.17574 7.37412 7.49105 7.55136 7.70259 7.92185 8.19308 8.64769 9.00871 9.15581 9.66153 11.16093 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.009096 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.730271 B = 3077.474626 C = 3981.821804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.537 5.537 3 C 0.051 3.949 4 C -0.070 4.070 5 C -0.079 4.079 6 C -0.148 4.148 7 C -0.121 4.121 8 C -0.139 4.139 9 C -0.068 4.068 10 C 0.253 3.747 11 H 0.048 0.952 12 N -0.811 5.811 13 C -0.526 4.526 14 H 0.055 0.945 15 C 0.084 3.916 16 N -0.846 5.846 17 Si 0.883 3.117 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.072 4.072 22 C 0.092 3.908 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.022 0.978 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.298 0.702 34 H 0.319 0.681 35 H 0.255 0.745 36 H 0.118 0.882 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 11.461 4.994 12.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.261 5.261 3 C -0.077 4.077 4 C -0.107 4.107 5 C -0.079 4.079 6 C -0.166 4.166 7 C -0.139 4.139 8 C -0.157 4.157 9 C -0.071 4.071 10 C 0.143 3.857 11 H 0.065 0.935 12 N -0.338 5.338 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.123 4.123 16 N -0.481 5.481 17 Si 0.710 3.290 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.073 4.073 22 C -0.035 4.035 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.056 10.601 5.092 11.808 hybrid contribution 0.336 0.255 0.242 0.486 sum 1.391 10.856 5.334 12.175 Atomic orbital electron populations 1.22357 0.87467 1.02607 0.99839 1.62316 1.07453 1.13048 1.43282 1.22136 0.95595 0.90218 0.99770 1.20452 0.93894 0.97023 0.99380 1.19389 0.93364 0.96880 0.98255 1.20580 0.93517 1.00615 1.01925 1.20721 0.98875 0.96082 0.98260 1.20903 0.94271 0.99097 1.01439 1.21694 0.94181 0.95396 0.95826 1.18214 0.90742 0.89160 0.87575 0.93453 1.59167 1.21495 1.35595 1.17516 1.20766 1.37473 1.03948 0.94232 0.92714 1.24944 0.95073 0.97644 0.94591 1.70107 1.36238 1.29209 1.12534 0.86773 0.78896 0.82152 0.81160 1.20715 1.21331 1.19962 1.19292 0.94848 0.95213 0.97920 1.21140 0.91132 1.01256 0.89931 0.90885 0.91792 0.95898 0.94834 0.90976 0.91250 0.90483 0.87427 0.87246 0.86701 0.89190 0.86840 0.93465 0.86403 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.56 60.06 0.57 0.93 16 2 N -0.54 -8.96 4.94 -244.49 -1.21 -10.16 16 3 C 0.05 0.72 5.58 -3.73 -0.02 0.70 16 4 C -0.07 -1.00 5.95 -27.93 -0.17 -1.17 16 5 C -0.08 -1.39 5.76 -104.70 -0.60 -1.99 16 6 C -0.15 -2.44 9.61 -39.79 -0.38 -2.83 16 7 C -0.12 -2.06 10.02 -39.95 -0.40 -2.46 16 8 C -0.14 -2.68 9.24 -39.66 -0.37 -3.04 16 9 C -0.07 -1.46 5.02 -104.52 -0.52 -1.98 16 10 C 0.25 6.14 2.21 -70.02 -0.15 5.98 16 11 H 0.05 1.26 7.32 -51.93 -0.38 0.88 16 12 N -0.81 -18.85 8.01 -6.65 -0.05 -18.90 16 13 C -0.53 -14.11 7.37 -34.44 -0.25 -14.37 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.08 2.31 5.39 -17.82 -0.10 2.21 16 16 N -0.85 -24.19 12.77 55.43 0.71 -23.48 16 17 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 21 C -0.07 -1.44 5.78 -104.73 -0.60 -2.05 16 22 C 0.09 1.79 4.14 -5.16 -0.02 1.77 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 25 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.03 0.48 8.05 -51.93 -0.42 0.06 16 27 H 0.07 0.85 7.95 -51.93 -0.41 0.43 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.12 2.10 6.23 -52.48 -0.33 1.78 16 33 H 0.30 6.22 9.06 -39.29 -0.36 5.86 16 34 H 0.32 7.10 7.27 -39.29 -0.29 6.81 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.12 2.63 6.28 -51.93 -0.33 2.31 16 37 H 0.04 0.74 8.13 -51.93 -0.42 0.31 16 LS Contribution 295.25 15.07 4.45 4.45 Total: -1.00 -29.29 295.25 -9.57 -38.86 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.42 Total: 11.28 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -3.02 Total: -18.28 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.55 Total: -52.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.29 -9.57 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.604 kcal (2) G-P(sol) polarization free energy of solvation -29.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds