Wall clock time and date at job start Mon Mar 30 2020 04:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47163 * 111.00093 * 2 1 4 4 C 1.52895 * 108.51229 * 165.29496 * 3 2 1 5 5 C 1.50711 * 109.96191 * 50.33692 * 4 3 2 6 6 C 1.38678 * 118.48815 * 163.29201 * 5 4 3 7 7 C 1.37209 * 120.54724 * 179.27331 * 6 5 4 8 8 C 1.38258 * 119.75656 * 0.54871 * 7 6 5 9 9 C 1.38013 * 119.87081 * 359.71914 * 8 7 6 10 10 C 1.50704 * 119.81526 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47329 * 219.98143 * 10 9 8 12 12 N 1.46901 * 109.46746 * 339.97982 * 10 9 8 13 13 C 1.50698 * 109.47005 * 99.97625 * 10 9 8 14 14 H 1.08002 * 120.00143 * 0.02562 * 13 10 9 15 15 C 1.37880 * 119.99705 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00082 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99835 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.46888 * 89.99839 * 17 15 13 19 19 H 1.48492 * 109.47350 * 209.99979 * 17 15 13 20 20 H 1.48499 * 109.46941 * 330.00176 * 17 15 13 21 21 C 1.37554 * 121.59379 * 343.06077 * 5 4 3 22 22 C 1.46634 * 111.00384 * 237.02235 * 2 1 3 23 23 H 1.09005 * 109.46687 * 182.97672 * 1 2 3 24 24 H 1.09002 * 109.47147 * 302.97607 * 1 2 3 25 25 H 1.08996 * 109.47136 * 62.97969 * 1 2 3 26 26 H 1.09000 * 109.62843 * 285.00108 * 3 2 1 27 27 H 1.08997 * 109.63163 * 45.38683 * 3 2 1 28 28 H 1.08997 * 109.39169 * 170.48520 * 4 3 2 29 29 H 1.08997 * 109.38767 * 290.28717 * 4 3 2 30 30 H 1.08005 * 119.82668 * 359.81746 * 6 5 4 31 31 H 1.07993 * 120.15459 * 180.15878 * 7 6 5 32 32 H 1.08006 * 120.06646 * 179.69746 * 8 7 6 33 33 H 1.00904 * 111.00171 * 296.04377 * 12 10 9 34 34 H 1.00897 * 111.00146 * 60.00299 * 12 10 9 35 35 H 0.97002 * 119.99678 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.30195 * 296.26719 * 22 2 1 37 37 H 1.08998 * 109.29843 * 55.84803 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3739 0.0000 4 6 3.4795 1.3245 0.3680 5 6 4.1890 0.3088 -0.4900 6 6 5.5730 0.3568 -0.5643 7 6 6.2629 -0.5566 -1.3209 8 6 5.5724 -1.5261 -2.0244 9 6 4.1948 -1.5739 -1.9574 10 6 3.4434 -2.6309 -2.7251 11 1 2.5420 -2.1953 -3.1560 12 7 4.2965 -3.1543 -3.8004 13 6 3.0635 -3.7533 -1.7940 14 1 3.3382 -3.7058 -0.7506 15 6 2.3652 -4.8408 -2.2743 16 7 2.0311 -4.8989 -3.5449 17 14 1.8936 -6.2318 -1.1200 18 1 0.5613 -5.9522 -0.5264 19 1 1.8398 -7.5074 -1.8781 20 1 2.9046 -6.3412 -0.0379 21 6 3.4976 -0.6545 -1.1872 22 6 1.9945 -0.7451 -1.1484 23 1 -0.3633 -1.0263 0.0534 24 1 -0.3633 0.5594 0.8621 25 1 -0.3633 0.4669 -0.9155 26 1 1.8795 1.8109 -0.9917 27 1 1.4545 1.9741 0.7308 28 1 3.9248 2.3066 0.2090 29 1 3.5830 1.0457 1.4167 30 1 6.1145 1.1133 -0.0157 31 1 7.3408 -0.5149 -1.3722 32 1 6.1101 -2.2446 -2.6254 33 1 4.5122 -2.4344 -4.4738 34 1 5.1394 -3.5638 -3.4264 35 1 1.5395 -5.6639 -3.8827 36 1 1.6986 -1.7909 -1.0653 37 1 1.5845 -0.3267 -2.0675 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260304127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:12 Heat of formation + Delta-G solvation = 10.773125 kcal Electronic energy + Delta-G solvation = -18251.128823 eV Core-core repulsion = 15605.916113 eV Total energy + Delta-G solvation = -2645.212711 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.17144 -38.29847 -36.54008 -33.97704 -32.97222 -32.34095 -29.65871 -28.10717 -27.60904 -24.83494 -24.49084 -23.53138 -21.22080 -20.21783 -18.52816 -17.44862 -16.94293 -16.66156 -16.22702 -16.02702 -15.72403 -15.14708 -14.96918 -14.46505 -14.24111 -14.19315 -13.85198 -13.44283 -13.18668 -12.92691 -12.85395 -12.77976 -12.65723 -12.36010 -12.18821 -12.07445 -11.36971 -11.31745 -11.27406 -10.55961 -9.50798 -9.33434 -9.17531 -8.90639 -7.98205 -6.18376 0.58071 0.64913 1.40277 1.42101 1.51511 2.45334 2.93708 3.05855 3.24571 3.84489 3.90595 4.14026 4.25229 4.29849 4.36612 4.40842 4.44514 4.52572 4.60528 4.65492 4.75704 4.82930 4.91869 4.98849 5.05014 5.12806 5.24033 5.27934 5.44507 5.68832 5.70841 5.78254 5.86882 6.08784 6.16027 6.20426 6.33442 6.67095 7.09460 7.24892 7.52716 9.04539 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.009096 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.730271 B = 3077.474626 C = 3981.821804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.049 3.951 4 C -0.068 4.068 5 C -0.084 4.084 6 C -0.141 4.141 7 C -0.118 4.118 8 C -0.151 4.151 9 C -0.098 4.098 10 C 0.263 3.737 11 H 0.011 0.989 12 N -0.821 5.821 13 C -0.528 4.528 14 H 0.038 0.962 15 C 0.038 3.962 16 N -0.878 5.878 17 Si 0.942 3.058 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.275 1.275 21 C -0.097 4.097 22 C 0.105 3.895 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.026 0.974 26 H 0.030 0.970 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.117 0.883 33 H 0.310 0.690 34 H 0.324 0.676 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 13.436 6.891 15.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.274 5.274 3 C -0.078 4.078 4 C -0.105 4.105 5 C -0.084 4.084 6 C -0.159 4.159 7 C -0.136 4.136 8 C -0.170 4.170 9 C -0.101 4.101 10 C 0.153 3.847 11 H 0.029 0.971 12 N -0.349 5.349 13 C -0.567 4.567 14 H 0.056 0.944 15 C -0.165 4.165 16 N -0.514 5.514 17 Si 0.768 3.232 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.200 1.200 21 C -0.098 4.098 22 C -0.023 4.023 23 H 0.076 0.924 24 H 0.113 0.887 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.135 0.865 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.215 12.587 7.000 14.572 hybrid contribution 0.012 -0.261 -0.318 0.412 sum 2.227 12.325 6.682 14.196 Atomic orbital electron populations 1.22424 0.86170 1.02339 1.01388 1.62308 1.08839 1.14699 1.41516 1.22280 0.96118 0.88799 1.00632 1.20570 0.93584 0.97523 0.98854 1.19850 0.94357 0.96606 0.97590 1.21060 0.93126 1.00737 1.00947 1.21107 1.00617 0.94880 0.96986 1.21032 0.93436 1.00235 1.02270 1.21438 0.95220 0.95951 0.97452 1.17788 0.90136 0.89271 0.87521 0.97141 1.58986 1.21640 1.36427 1.17809 1.20911 1.37090 1.04840 0.93820 0.94371 1.25603 0.95199 0.99835 0.95896 1.70219 1.37323 1.29862 1.13999 0.85842 0.78583 0.79502 0.79305 1.20167 1.20884 1.19955 1.19464 0.95005 0.96352 0.98976 1.20776 0.91546 0.99329 0.90618 0.92377 0.88719 0.95513 0.95191 0.87735 0.87925 0.89666 0.83465 0.83837 0.86537 0.87841 0.86312 0.93584 0.90572 0.95794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.56 127.69 1.22 1.90 16 2 N -0.55 -18.00 4.94 -927.43 -4.58 -22.58 16 3 C 0.05 1.26 5.58 86.22 0.48 1.74 16 4 C -0.07 -1.69 5.95 29.82 0.18 -1.52 16 5 C -0.08 -2.77 5.76 -19.92 -0.11 -2.88 16 6 C -0.14 -4.11 9.61 22.13 0.21 -3.90 16 7 C -0.12 -3.66 10.02 22.03 0.22 -3.44 16 8 C -0.15 -5.77 9.24 22.22 0.21 -5.56 16 9 C -0.10 -4.31 5.02 -19.80 -0.10 -4.41 16 10 C 0.26 13.43 2.21 43.42 0.10 13.52 16 11 H 0.01 0.62 7.32 -2.39 -0.02 0.60 16 12 N -0.82 -39.58 8.01 -174.95 -1.40 -40.98 16 13 C -0.53 -29.62 7.37 25.60 0.19 -29.43 16 14 H 0.04 2.21 7.74 -2.91 -0.02 2.19 16 15 C 0.04 2.17 5.39 84.66 0.46 2.62 16 16 N -0.88 -51.93 12.77 21.45 0.27 -51.66 16 17 Si 0.94 44.84 29.54 68.60 2.03 46.87 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 21 C -0.10 -3.95 5.78 -19.93 -0.12 -4.06 16 22 C 0.10 4.27 4.14 85.58 0.35 4.62 16 23 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.09 1.99 8.04 -2.39 -0.02 1.97 16 25 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.03 0.79 8.05 -2.39 -0.02 0.77 16 27 H 0.10 2.01 7.95 -2.39 -0.02 1.99 16 28 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 31 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.12 4.26 6.23 -2.91 -0.02 4.24 16 33 H 0.31 13.43 9.06 -89.69 -0.81 12.62 16 34 H 0.32 14.83 7.27 -89.70 -0.65 14.18 16 35 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.08 3.68 6.28 -2.39 -0.01 3.67 16 37 H 0.02 1.00 8.13 -2.39 -0.02 0.98 16 Total: -1.00 -65.51 295.25 -0.79 -66.30 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.39 Total: 32.85 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: 3.28 Total: -30.79 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -5.71 Total: -115.22 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.51 -0.79 -66.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260304127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.069 kcal (2) G-P(sol) polarization free energy of solvation -65.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds